Alosa sapidissima (American shad): 121682228 Help Entry 121682228         CDS       T11137                                  Symbol prpf19 Name (RefSeq) pre-mRNA-processing factor 19   KO K10599   pre-mRNA-processing factor 19 [EC:2.3.2.27] Organism asad  Alosa sapidissima (American shad) Pathway asad03040   Spliceosome asad04120   Ubiquitin mediated proteolysis Brite KEGG Orthology (KO) [BR:asad00001]  09120 Genetic Information Processing   09121 Transcription    03040 Spliceosome     121682228 (prpf19)   09123 Folding, sorting and degradation    04120 Ubiquitin mediated proteolysis     121682228 (prpf19)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03041 Spliceosome [BR:asad03041]     121682228 (prpf19)    04121 Ubiquitin system [BR:asad04121]     121682228 (prpf19)    03400 DNA repair and recombination proteins [BR:asad03400]     121682228 (prpf19) Enzymes [BR:asad01000]  2. Transferases   2.3  Acyltransferases    2.3.2  Aminoacyltransferases     2.3.2.27  RING-type E3 ubiquitin transferase      121682228 (prpf19) Spliceosome [BR:asad03041]  Complex B   Other components    Prp19 complex     121682228 (prpf19)  Complex C    Prp19-CDC5 complex     121682228 (prpf19) Ubiquitin system [BR:asad04121]  Ubiquitin ligases (E3)   U-box type E3    121682228 (prpf19) DNA repair and recombination proteins [BR:asad03400]  Eukaryotic type   Other factors with a suspected DNA repair function    PSO4 complex     121682228 (prpf19) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  WD40_Prp19 Beta-prop_WDR3_1st Beta-prop_WDR5 Beta-prop_EML_2 Beta-prop_THOC3 WD40 WD40_WDHD1_1st WD40_CDC20-Fz Prp19 Beta-prop_WDR3_2nd Beta-prop_WDR36-Utp21_2nd WDR55 WD40_Gbeta Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_2nd EIF3I Beta-prop_CAF1B_HIR1 WD40_MABP1-WDR62_2nd Beta-prop_WDR36-Utp21_1st Beta-prop_EML Beta-prop_WDR75_1st ANAPC4_WD40 Beta-prop_SCAP WD40_MABP1-WDR62_1st Beta-prop_IFT140_1st NBCH_WD40 Beta-prop_Aladin Beta-prop_WDR41 Beta-prop_TEP1_C Beta-prop_EIPR1 PEP5_VPS11_N Beta-prop_IFT122_1st Beta-prop_WDR19_1st WDR90_beta-prop_4th Beta-prop_Vps41 Beta-prop_SPT8 Beta-prop_HPS5 Beta-prop_RIG_2nd Beta-prop_DCAF4 Beta-prop_WDR35_TULP_N Beta-prop_Nup120_160 U-box Beta-prop_ACSF4 PROPPIN Beta-prop_VPS8 WD40_RFWD3 Beta-prop_DCAF12 Tricorn_2nd Cytochrom_D1 Peripla_BP_2 zf-Nse Cep57_MT_bd ATG16 Motif Other DBs NCBI-GeneID:  121682228 NCBI-ProteinID:  XP_041918219 LinkDB All DBs Position 14:complement(19617158..19624014) Genome browser AA seq 504 aa AA seqDB search MSLVCAISNEVPEHPCVSPVSNQVFERRLIEKYIVENGADPINGQPLSEEQLIDIKVSHP IRPKAPSATSIPAILKSLQDEWDAVMLHSFTLRQQLQTTRQELSHALYQHDAACRVIARL TKEVTAAREALATLKPQAGLVVPQAAPASQPAVGAGGEPMEVTEQVGMTADIIQKLQDKA TVLTTERKKRGKTVPEELVRAEDLGKYRQVASHVGLHSASIPGILCLDLCPSDTNKVLTG GADKNVVVFDRREEQIVATLKGHTKKVSSVIYHPSQSVVFSASPDTTIRVWSVTGGNCVQ VVRAHEASVTGLSLHATGDYLLSSSEDQYWAFSDVQTGRVLTKVTDETAGCALTCAQFHP DGLIFGTGTADSQIKIWDLKERTNVANFPGHSGPVTAIAFSENGYYLATGAQDSSLKLWD LRKLKNFKTIALDNNYEVKSLVFDQSGTYLAVGGSDIRVYICKQWSEVLNFGDHTGLVTG VAFGEHAQFLSSTGMDRSLKFYSL NT seq 1515 nt NT seq  +upstreamnt  +downstreamnt atgtctttggtttgcgcaatttccaatgaggttcctgagcatccctgcgtttcaccggtg tccaaccaagtgttcgagcgccggctgattgagaaatacattgttgaaaatggagcggac cctatcaacggccaacctctgtccgaagagcagttgatcgatatcaaggtttcgcatccc atccgccccaaggctccatctgcaactagcattccagctatcctcaagtcactacaggat gaatgggatgcagtgatgctgcacagtttcactctgcgccagcagctgcagaccacacgg caggagctctctcacgccctctaccagcacgacgccgcctgcagagtcatcgcccgcctc accaaagaggtcacagcagccagagaggctcttgccacactcaaacctcaagctggattg gtggttccacaggctgctcctgcttcccagccagccgtgggtgctggtggggagcctatg gaggtcaccgaacaggttggcatgacagcagacatcatacagaagctgcaagacaaggcc actgtgctgacaacagagagaaagaagaggggaaagactgtgccagaggaactggtccga gccgaggatcttggcaaatacagacaagtggcttctcatgttgggctgcatagtgccagt atcccaggaatcctctgtctggatctctgtccctcagacaccaacaaagtactcactggt ggtgctgataagaacgtggtggtgtttgaccgtcgggaggagcagattgtggccaccctc aaaggtcacaccaaaaaggtctcctctgtcatctaccatccttctcagtcagtggtgttc tcagcttctcccgacaccaccatccgggtgtggtccgtcaccgggggcaactgtgtgcag gtggtgcgcgctcatgaggcgagcgtgactggcctctccctgcacgccactggagactac ctgctcagctcctctgaggaccagtactgggccttctctgatgtccagactggtcgtgtt ctgactaaagtgactgacgaaaccgcaggatgtgctttgacatgtgctcagttccaccct gacggtctgatctttggtactggcactgctgactctcagatcaagatctgggatctgaag gagcgcaccaatgtggccaacttccctggacactctggcccagtcacggccattgccttc tctgagaatggttattacctggccacaggtgcccaggacagctctcttaagctttgggat ctgaggaaacttaagaacttcaagactattgcactggataacaattatgaggtgaagtcc ctagtgtttgaccagagtggtacctacctggccgtgggtggatctgacatcagagtttac atctgcaagcaatggtctgaggtcctgaactttggcgatcatactggactggtgaccggc gtggctttcggagaacatgcacagttcctctcttccactggaatggacagaagcctcaag ttctacagtctgtag

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