Alosa sapidissima (American shad): 121682375
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Entry
121682375 CDS
T11137
Symbol
lrrc4cb
Name
(RefSeq) leucine-rich repeat-containing protein 4C
KO
K07523
netrin-G1 ligand
Organism
asad Alosa sapidissima (American shad)
Pathway
asad04514
Cell adhesion molecules
Brite
KEGG Orthology (KO) [BR:
asad00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
121682375 (lrrc4cb)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
asad04515
]
121682375 (lrrc4cb)
Cell adhesion molecules [BR:
asad04515
]
Immunoglobulin superfamily
NGL family
121682375 (lrrc4cb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_8
LRR_4
LRR_5
LRR_1
I-set
LRR_14
Ig_3
LRR_9
Ig_2
ig
V-set
LRRNT
Podoplanin
Insulin_TMD
Syndecan
Motif
Other DBs
NCBI-GeneID:
121682375
NCBI-ProteinID:
XP_041918431
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Position
14:complement(31537800..31557688)
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AA seq
628 aa
AA seq
DB search
MLNKMTSYHWNQMMRGPRWKGAVSDPLFVLLLFLQLLVVAGLVRAQTCPSVCSCSNQFSK
VICTRRGLRDVPDGVSTNTRYLNLQDNLIQVIKVDSFKHLRHLEVLQLSKNHIRSIEIGA
FNGLASLNTLELFDNRLTTIPNAAFEYLSKLKELWLRNNPIESIHAYAFNRLPSLQRLDL
GELKRLSYVSQAAFKGLSNLRYLNLGMCNLKEIPNTVPLERLEELELSGNQLSVLQPGSF
RGLANLKRLWMMHAQIQTIERNSFDDLQSLIELNLAHNNLTLLPHELFNPLQRLERVHLH
HNPWNCNCDILWLSWWLKEVAPANVSCCARCYSPVNYRGRYIGDLDQSYFQCHAPIIAEP
PTDLNVTEGMSAELRCGTNTWTSITWQTPNGSMINIGAVLSRISILNDGTLVFSNVSMGD
IGRYTCIVVNMAGNTSVSAFLNVTSIENSGVTYFTTVTVETIESIEEGRTPVQPANSWAS
SSTTRGTPVATERAYTIPVTDIDAESVDGLDEVMKTTKIIIGCFVAITLMAAVMLIIFYK
MRKQHHLQDPDGPTQTIEIINVDEELTGIPSLENHLTLPHLGHDHYNHYNSYKTPYNHGP
TISSLHTSAHEPLLIQASSKDNVQETQI
NT seq
1887 nt
NT seq
+upstream
nt +downstream
nt
atgttgaacaagatgacctcttaccattggaaccagatgatgagaggtcctagatggaaa
ggagccgtgtctgacccactcttcgtgctgctgctgtttttgcagctgttggtggtggct
gggttggtcagagcccagacgtgtccgtcggtgtgctcctgcagcaaccagttcagcaag
gtcatctgcacgcgccgaggactgcgcgacgtgcccgatggcgtatccacaaacacgcgt
tacctgaacctccaggacaatctcatccaggtcatcaaggtggacagtttcaagcacttg
cgccacctcgaggtcctgcagctcagcaagaaccacatccggagcatcgagatcggggcg
ttcaatggactcgccagtctcaacacgctggagcttttcgacaatcgccttactaccatt
cccaatgcagccttcgagtacctgtccaagctgaaggagctgtggctgaggaacaacccc
attgagagcatccatgcctacgccttcaaccgcctcccgtccctgcagcggctcgacctg
ggcgagctcaagcggctctcctacgtctcccaggcggcgttcaaaggcttgagcaatctg
cgctatctcaacctgggcatgtgtaacctcaaggagatccccaacaccgtgcccctagag
aggctggaggagctggagctctcgggcaaccagctctcggtgctgcagcccggctccttc
cgggggctcgccaacctcaagcggctgtggatgatgcacgcgcaaatccagaccatcgag
aggaactccttcgacgacctgcagtcgctgatcgagctcaacctggcccacaataacctc
accctcctcccacacgagctcttcaatcccctgcagcgcttagagagggtgcacttacac
cacaatccttggaattgcaactgcgacatactatggcttagctggtggctgaaggaggtg
gctccagctaatgttagctgctgcgcccgctgctactcaccggtcaactacaggggacga
tacatcggagaccttgaccagagctattttcagtgtcatgctcctatcatagcagagcca
cccacagaccttaacgttacagaggggatgtctgcagaactcagatgtggaacaaacaca
tggacctcaatcacctggcagacgccaaatggctccatgataaatattggtgctgtcctc
tcgagaatctccattctcaatgacgggacactggtcttttccaatgtttcaatgggggac
atagggaggtatacgtgcatagttgtcaacatggcaggcaacacgtctgtgtcagctttt
ctaaacgtgacgtctatagagaacagtggcgtcacctacttcaccacggtcactgtcgaa
actatcgagtcaattgaagagggcaggacccccgtccagccggccaacagctgggcgtcg
tcctccacaaccagggggactccagtcgccacggagagagcctacacgatccctgtgacg
gacatcgacgcggagagtgtcgatggtctggacgaggtcatgaagactaccaagatcatt
attggctgctttgtagcgatcacactcatggctgctgtcatgctcattatcttctataag
atgcgaaagcagcatcacctgcaggatcccgacggccccactcagaccatagagatcata
aacgtggacgaggagctaacagggattccctccctagagaaccatctgactctgccccac
ctggggcatgaccactacaatcattacaattcctataagactccttataaccacggcccc
acaatcagttccttgcatacttcagcgcatgaacctttactaatccaagccagctcaaaa
gacaatgttcaagagacgcaaatctag
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