Alosa sapidissima (American shad): 121683811
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Entry
121683811 CDS
T11137
Symbol
rpa1
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit
KO
K07466
replication factor A1
Organism
asad Alosa sapidissima (American shad)
Pathway
asad03030
DNA replication
asad03420
Nucleotide excision repair
asad03430
Mismatch repair
asad03440
Homologous recombination
asad03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
asad00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
121683811 (rpa1)
03420 Nucleotide excision repair
121683811 (rpa1)
03430 Mismatch repair
121683811 (rpa1)
03440 Homologous recombination
121683811 (rpa1)
03460 Fanconi anemia pathway
121683811 (rpa1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
asad03000
]
121683811 (rpa1)
03032 DNA replication proteins [BR:
asad03032
]
121683811 (rpa1)
03400 DNA repair and recombination proteins [BR:
asad03400
]
121683811 (rpa1)
Transcription factors [BR:
asad03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
121683811 (rpa1)
DNA replication proteins [BR:
asad03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
121683811 (rpa1)
DNA repair and recombination proteins [BR:
asad03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
121683811 (rpa1)
MMR (mismatch excision repair)
121683811 (rpa1)
DSBR (double strand breaks repair)
HR (homologous recombination)
121683811 (rpa1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
RADX
CATSPERD-E_C
Motif
Other DBs
NCBI-GeneID:
121683811
NCBI-ProteinID:
XP_041919579
LinkDB
All DBs
Position
15:10745807..10785382
Genome browser
AA seq
603 aa
AA seq
DB search
MDVVLTEGAIEALTKGQDVSSPVLQLVNIRKIDGGNGPARFRLMMSDGLHTMSSFMLSTQ
LNPMAEQNQLAPNCVCLLKKSVTNVLKDGRRVVVVLDVEIIKMAEEVDGKIGEPTPYVEG
QAKAPQSAVPTPPVRPLQSQNGTDGMNKGSNKSAFGKKPLVAPNTPGGTSKIAPIASLNP
YQSKWTIRARVTNKSGVRTWSNSRGEGKLFSMDLVDESGEIRVTGFNQEVDKFYTLVEQG
KVYYISKGSLKMANKQYSTLKNDYEMTLNGDSSVIPCEDSHDVPTLQCNFVPIGNLEAHD
KDAIVDVIGVVKTVEDVTRITTKNSREVSKRNVHLMDMSARVITLTMWGAEAETFDGSGQ
PILAIKGARLSDFGGRSLSTLFSSVVMVNPDLPEAYKLRGWYDKEGHTMDGQSMTELRGG
GGGGGNTNWKTLADVKNEHLGHGEKADYFSCIGTVVHLRKENCLYQACASKDCNKKVVDQ
QNGMYRCEKCDKEFPEFKYRLMLSANIADFGDNQWVTCFQDTAEAILGQNAAYVGQLKDS
NEAAFDEIFQQANFNTFVLRNRVKLETYNDESRIKVTVMDAKPVDHKEYSKRLIMNIRKL
AVQ
NT seq
1812 nt
NT seq
+upstream
nt +downstream
nt
atggatgttgttctaacagagggagcaatagaggctctgactaaaggccaagatgtcagc
agcccagttttgcagttggtgaatattcgcaaaatcgatggagggaatggaccggcccgc
ttccgcctcatgatgagcgatggactgcacactatgtcctcttttatgctctcaacacag
ctcaacccaatggcagaacagaaccagctggcgcccaactgtgtgtgtttgctgaagaaa
agtgtgaccaacgtgctcaaagatggacgacgtgtcgtggtggtcctagatgtagaaatc
ataaaaatggccgaggaggttgatggtaaaattggtgaacccaccccctatgttgaaggt
caggcaaaggccccacagtccgcagtgcctacccctcctgtccgccctttgcagtcccag
aatggaacggatggtatgaacaagggctcaaacaaatctgcatttggcaaaaagccactg
gttgcacccaatacaccaggaggcacatccaaaattgcccccattgccagcctgaaccca
tatcagtccaagtggactattcgagctcgggttactaacaagagtggtgtccgtacatgg
agtaactcgcgaggggagggaaagttgttctccatggacttggtagatgaaagtggagag
attcgagtgactggattcaatcaggaggtggacaaattctacacgctggttgagcagggc
aaggtctactacatctccaagggctcgctgaagatggccaataagcagtactcgaccttg
aagaatgactatgaaatgacgttgaatggtgactcctctgttatcccttgcgaggacagc
cacgatgtgcccaccttgcagtgcaacttcgtgcctatcggaaacctggaggcgcatgac
aaggatgctatcgtagatgtgatcggtgtagtcaagaccgtggaggacgtgactcgcatc
accaccaaaaacagccgtgaggtgtccaagaggaacgtccacctgatggacatgtctgcc
cgagtcatcaccctcaccatgtggggagctgaggcagagacgtttgatggcagtgggcag
cctatcctggccatcaaaggggcacgtctctcagattttggtggccgctctctcagtacc
ctttttagcagcgtggtcatggtgaacccagacttgccagaggcctacaagctgcgtggc
tggtatgataaggagggccatacgatggatgggcagtccatgactgaactgaggggaggt
ggtggcggtggaggcaacaccaactggaagaccctggcagacgtcaagaatgagcacctg
ggtcacggagagaaggctgactactttagctgcattgggacggtggtgcacctgcgcaag
gagaactgcctgtaccaggcctgcgccagcaaagactgcaacaagaaggtggtggaccag
cagaatggcatgtaccgctgtgagaagtgcgacaaggagttccctgagtttaagtaccgc
ctcatgctgtcggccaacatagccgactttggggataaccagtgggtgacgtgctttcaa
gacacagctgaagccatcctgggccagaacgctgcatacgttgggcagctcaaggactcg
aatgaagcggcttttgatgagatctttcagcaagccaacttcaacacttttgtcctccgc
aaccgagtaaagctggagacgtacaatgatgagtcacgcatcaaggtgactgtgatggac
gccaagcctgtggaccacaaggagtacagcaagcggctgatcatgaacatcaggaagctg
gctgtccagtag
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integrated database retrieval system
