Alosa sapidissima (American shad): 121683914
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Entry
121683914 CDS
T11137
Symbol
cltcb
Name
(RefSeq) clathrin, heavy chain b (Hc) isoform X1
KO
K04646
clathrin heavy chain
Organism
asad Alosa sapidissima (American shad)
Pathway
asad04142
Lysosome
asad04144
Endocytosis
asad05100
Bacterial invasion of epithelial cells
Brite
KEGG Orthology (KO) [BR:
asad00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
121683914 (cltcb)
04142 Lysosome
121683914 (cltcb)
09160 Human Diseases
09171 Infectious disease: bacterial
05100 Bacterial invasion of epithelial cells
121683914 (cltcb)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
asad04131
]
121683914 (cltcb)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
asad04147
]
121683914 (cltcb)
Membrane trafficking [BR:
asad04131
]
Endocytosis
Clathrin-mediated endocytosis
Clathrin
121683914 (cltcb)
Exosome [BR:
asad04147
]
Exosomal proteins
Proteins found in most exosomes
121683914 (cltcb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Clathrin
Clathrin_propel
Clathrin_H_link
Clathrin-link
TPR_COPA_B
TPR_PEP5_VPS11
TPR_Vps41
Motif
Other DBs
NCBI-GeneID:
121683914
NCBI-ProteinID:
XP_041919716
LinkDB
All DBs
Position
15:complement(8420125..8441087)
Genome browser
AA seq
1685 aa
AA seq
DB search
MAQILPIRFQEHLQLQNLGINPANIGFSTLTMESDKFICVREKVGEQAQVVIIDMSDPNT
PIRRPISADSAIMNPASKVIALKDAAKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTV
ALVTDNAVYHWSMEGDSQPIKVFDRHSSLAGCQIINYRTDAKQKWLLLIGISAQQNRVVG
AMQLYSVDRKVSQPIEGHAAGFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTG
NQPFPKKAVDVFFPPEAQNDFPVAMQISSKQDVVFLITKYGYIHLYDLETGTCIYMNRIS
GETIFVTAPHEPTSGIIGVNRKGQVLSVCVEEENIIPYITNVLQNPDLALRMAVRNNLAG
AEELFARKFNNLFASGNYSEAAKVAANAPKGILRTPDTIRRFQSVPAQPGQTSPLLQYFG
ILLDQGQLNKFESLELCRPVLQQGRKQLLEKWLKEDKLECSEELGDLVKSVDPTLALSVY
LRANVPNKVIQCFAETGQFQKIVLYAKKVGYTPDWIFLLRNVMRISPEQGLQFSQMLVQD
EEPLADITQIVDVFMEYNLIQQCTSFLLDALKNNRPTEGPLQTRLLEMNLMHAPQVADAI
LGNQMFTHYDRAHVAQLCEKAGLLQRALEHYTDLYDIKRAVVHTHLLNPEWLVNFFGALS
VEDSLECLRAMLSANIRQNLQICVQVASKYHEQLSTQTLIELFESFKSFEGLFYFLGSIV
NFSQDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCD
RFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRLPVVIGGLLDVDCSEDVIKNLILVVRGQ
FSTDELVAEVEKRNRLKLLLPWLEARIHEGCEEPATHNALAKIYIDSNNNPERFLRENPF
YDSRVVGKYCEKRDPHLACVAYERGQCDQELINVCNENSLFKSLSRYLVRRKDPELWASV
LLESNPYRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFS
EHRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAISNELFEEAFAIFRKFDVNT
SAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGLVKEAIDSYIKADDPSAYME
VGQAAAQSGNWEDLVKFLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNNAHIQ
QVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFA
CVDGKEFRLAQMCGLHIVVHADELEELINYYQGRGYFEELITMLEAALGLERAHMGMFTE
LAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMM
NHPTDAWKEGQFKDIITKVANVELYYRAVQFYLEFKPLLLNDLLIVLSPRLDHSRAVNFF
SKVKQLPLVKPYLRSVQSHNNKSVNEALNNLFITEEDYQALRTSIDAYDNFDNITLAQSL
EKHELIEFRRIAAYLFKGNNRWKQSVELCKKDKLYKDAMQYASESKDTELAEELLQWFLL
EEKRECFAACLFTCYDLLRPDVVLETAWRHNIMDFSMPYFIQVMREYLSKVDAIKEKVDK
LDASESLRKQEEQATEAQPIVYGTPQLMLTAGPNVAVPPQQAPYGYGYTAPAGYVQPQPG
FGYGM
NT seq
5058 nt
NT seq
+upstream
nt +downstream
nt
atggctcaaatcctacctatccgctttcaggagcatttgcagctccagaacttggggatc
aaccctgccaacattggcttcagtacactgactatggagtcagataaattcatctgtgtt
cgagagaaagttggcgagcaggcacaggtagtgattatcgacatgagtgacccaaacact
cctatccgcaggcccatttcagcagacagtgccatcatgaacccggccagcaaagttatt
gcactcaaagacgctgcaaaaacacttcaaatttttaacattgaaatgaagagcaaaatg
aaggcccacacaatgactgatgatgtcacattctggaagtggatctccctcaatactgta
gcacttgtgacagacaacgctgtttaccattggagcatggaaggagactctcagccaatc
aaagtgttcgacagacactccagtttagcaggctgtcaaatcataaactaccgcactgac
gccaaacagaaatggctgcttctcattgggatctctgcgcagcaaaaccgtgtagtgggt
gcaatgcagctgtactctgtggacagaaaggtctcccagcccattgagggccacgcagcc
gggtttgctcagttcaaaatggagggaaatgctgaggaatcgaccctgttctgttttgct
gtgcgaggacaagcggggggaaagctgcacatcattgaagttggtactccaccgacgggc
aaccagccatttccaaagaaagccgtggatgtgttcttccctccagaggcccagaatgac
ttccctgtcgctatgcagataagctccaagcaggatgttgtctttctcatcaccaaatac
ggctacatccacctgtatgaccttgagacgggcacatgcatctacatgaacaggatcagt
ggagagaccatctttgtcacagccccccatgagcccacttctggcatcattggagtcaac
cgcaaaggacaggtgctgtctgtgtgtgtggaagaggagaacatcatcccctacatcacc
aatgtgctgcagaacccagacctggcgctgcgcatggccgtgcgcaacaacctggccggt
gccgaggagctcttcgcccgcaagttcaacaacctctttgccagcggcaactactcggag
gctgccaaagtggcagctaacgcacccaagggaattttgcggactccagacaccatccgg
cggttccagagtgttccggcacagccgggccagacctcgcccctgctccagtacttcggg
atcctgctggaccagggccagctcaacaagtttgagtccctggagctgtgcaggcccgtg
ctgcagcagggacgcaagcagctgctggagaaatggctgaaggaggataagcttgaatgc
tctgaagagcttggtgatctggtgaagtcagtggatcccaccctggctcttagtgtctac
ttgagggccaacgtccccaacaaagtcatccagtgctttgcagagactgggcaattccag
aagatcgtcctctatgccaaaaaggttggctacactccagactggatcttcctgctgagg
aacgtgatgcgcatcagcccagaacagggcctgcagttctcccagatgcttgtgcaggac
gaggagccgctggctgacattacacagatcgtagatgtgttcatggagtacaacctgatc
cagcagtgcacctccttcctgttggacgccctgaagaacaaccggcccacagagggaccg
ctgcagacccgcctgctggagatgaacctgatgcacgcgccacaggttgccgatgccatc
ctcgggaaccagatgttcacccattatgaccgcgcccacgtggcccagctgtgcgagaag
gcagggctgctgcagagagctctggagcactacaccgacctgtacgacatcaagcgggcc
gtggtgcacactcacctgctcaacccagagtggctggtgaacttctttggcgcgctgtca
gtggaggactctctggagtgcctgagagccatgctgtcggccaacatccgccagaacctg
cagatctgcgtgcaggtggcctccaagtaccatgagcagctctccacccagacactcatt
gagctcttcgagtccttcaagagcttcgagggtctcttttatttcctgggctctattgtg
aacttcagccaggacccagaggtgcacttcaagtacatccaggcagcatgcaaaaccgga
cagattaaggaagtggagagaatctgcagggagagcaactgctacgaccccgaacgtgta
aagaacttcctgaaggaagctaagctgactgatcagctgcccctgattattgtgtgcgat
cgctttgactttgtccatgaccttgtgctctacctgtaccgcaacaacctgcagaagtac
attgagatctatgttcagaaggtgaaccccagccgtctgcctgtggtgattggaggtctg
ctggacgtcgactgctccgaggacgtcatcaagaacctcatcctggtggtgcggggccag
ttctccaccgacgagctggtggccgaggtggagaagaggaacagactgaagctcctgctg
ccttggctagaagcccgcatccatgagggctgcgaggagccagctacccataatgccctg
gccaagatctacattgacagcaacaacaacccggagcgcttcctgcgggagaaccccttc
tacgacagccgtgtggtggggaagtactgcgagaagagggatccccacctggcctgtgtg
gcttacgagcgaggacagtgcgaccaagagctcattaacgtgtgcaatgagaactccctg
tttaagagtctgtcccggtacctggtgcgccggaaggacccggagctgtgggccagcgtg
ctgctggagagtaacccctacaggaggcccctcatcgaccaggtcgttcagactgccctc
tccgaaacccaagatcctgaggaggtgtccgttactgtcaaggccttcatgactgctgac
ctacccaacgaactcattgagcttctggagaagattgttttggataactccgtcttcagt
gaacacaggaaccttcagaacctcctgatcctcacggctataaaggcagaccgcacccgt
gtgatggagtacatcaaccgcctggacaactatgatgcccctgacattgcaaacattgcc
atcagcaacgagctcttcgaggaggcctttgccattttccggaagtttgacgtcaacaca
tcagctgtgcaggtgctcatcgagcacattggcaacctggaccgcgcctacgagtttgcc
gagcgctgcaacgagccggccgtgtggagccagctggccaaggcccagctgcagaagggc
ctggtgaaggaggccattgactcctacatcaaagctgatgacccctccgcctacatggag
gtcggacaggctgcagctcagagtgggaactgggaggacctggtgaagttcttgcagatg
gcccgtaagaaggcccgcgagtcctacgtggagacagagctcatcttcgctctggccaag
accaaccggctggccgagctggaagaatttatcaacggccctaacaatgcacacattcag
caggttggagacagatgttatgatgagaagatgtacgacgccgccaagttgctgtacaac
aacgtatcaaactttggccgcctggcctccactctggtgcacctgggcgaatatcaggca
gctgtggacggtgcacgcaaggccaacagcacaaggacctggaaggaggtttgctttgcc
tgcgtggatgggaaggagttccgcctggcccagatgtgtgggctgcacatcgtggttcat
gctgatgaactggaggagctcatcaattactatcagggccggggctactttgaggagctg
atcaccatgctggaggcggccctgggcctggagcgcgctcacatgggcatgttcaccgag
ctggccatcctctactccaaattcaaaccgcagaagatgagggagcacctggagctcttc
tggtcacgcgtcaacattccaaaggtgctgagagctgctgagcaggcccatctctgggca
gagctggtgttcctgtacgacaagtacgaggagtacgacaacgccatcatcaccatgatg
aaccaccccacagacgcctggaaagagggacagttcaaagacatcatcaccaaggtggct
aatgtggagctgtactacagagctgtccagttctatttggaattcaagcccttgttactg
aatgacctgctcatagttttatcaccaagacttgatcattctcgagcagtcaatttcttc
agcaaggtcaagcagttgcctttggtaaaaccctacctgaggtcagtacagagccataac
aacaagtcggttaatgaggcactaaataaccttttcataactgaggaggattatcaggct
ctgcgcacatccatcgatgcctatgacaactttgacaacatcactctggctcaaagcctt
gagaagcacgagctcatcgagttcaggagaatcgcggcatacctctttaagggcaacaac
cgctggaagcagagtgtcgaactctgcaagaaggacaagctctacaaggacgccatgcag
tacgcgtccgagtccaaggacacggagctggcggaggaactgctgcagtggttcctcctg
gaggagaagagggagtgcttcgccgcctgcctcttcacctgttacgacctgctgcggccc
gacgtggtactggagaccgcctggaggcacaacatcatggacttctccatgccctacttc
atccaggtcatgagggagtacctgagcaaggttgatgcaattaaagaaaaggtggacaag
ctggacgcctccgagtcgttacggaaacaggaagagcaagcaaccgaggcacagcccatt
gtttacggtaccccccagttgatgcttactgctggccccaacgtggccgtcccaccccag
caggccccctatggctatggctacactgcaccagctggctatgtccagcctcagccaggc
tttggctatggcatgtaa
DBGET
integrated database retrieval system
