KEGG   Alosa sapidissima (American shad): 121684016
Entry
121684016         CDS       T11137                                 
Symbol
pafah1b1a
Name
(RefSeq) lissencephaly-1 homolog A
  KO
K16794  platelet-activating factor acetylhydrolase IB subunit alpha
Organism
asad  Alosa sapidissima (American shad)
Pathway
asad00565  Ether lipid metabolism
asad01100  Metabolic pathways
Brite
KEGG Orthology (KO) [BR:asad00001]
 09100 Metabolism
  09103 Lipid metabolism
   00565 Ether lipid metabolism
    121684016 (pafah1b1a)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:asad03036]
    121684016 (pafah1b1a)
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:asad04147]
    121684016 (pafah1b1a)
Chromosome and associated proteins [BR:asad03036]
 Eukaryotic type
  Centrosome formation proteins
   Spindle formation proteins
    121684016 (pafah1b1a)
Exosome [BR:asad04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   121684016 (pafah1b1a)
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_WDHD1_1st WD40_CDC20-Fz EIF3I Beta-prop_CAF1B_HIR1 WD40_MABP1-WDR62_2nd Beta-prop_TEP1_2nd WDR55 Beta-prop_WDR75_1st Beta-prop_TEP1_C Beta-prop_EML_2 Beta-prop_EIPR1 Beta-prop_WDR90_POC16_2nd ANAPC4_WD40 WD40_MABP1-WDR62_1st Beta-prop_IFT122_1st NBCH_WD40 Beta-prop_SCAP Beta-prop_EML Beta-prop_Nup120_160 Beta-prop_Vps41 Beta-prop_DCAF4 WDR90_beta-prop_4th WD40_RFWD3 LisH Beta-prop_SPT8 Beta-prop_IFT140_1st LisH_PAC1 Beta-prop_DCAF12 Beta-prop_RIG_2nd eIF2A Beta-prop_WDR35_TULP_N Nucleoporin_N Beta-prop_NUP159_NUP214 Pox_A_type_inc Beta-prop_WDR11_2nd LisH_2 ARMC9_LisH SutA-RBD DUF2570
Other DBs
NCBI-GeneID: 121684016
NCBI-ProteinID: XP_041919866
LinkDB
Position
15:10425041..10458134
AA seq 410 aa
MVLSQRQRDELNRAIADYLRSNGYEEAYSVFKKEAELDMNEELDKKYAGLLEKKWTSVIR
LQKKVMELESKLNEAKEEITLGGPIGQKRDPKEWIPRPPERYALSGHRSPVTRVIFHPVF
SVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDQTGKLLASCSADMTIKLWDFQ
GFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWEVATGYCVKTFTGHREWVRMV
RPNQDGTLIASSSNDQTVRVWVVASKECKAELREHEHVVECISWAPESAHPTILEATGSE
TKKSGKPGPFLLSGSRDKTIKMWDVSIGMCLMTLVGHDNWVRGILFHPGGKFIVSCADDK
TLRIWDYKNKRCQKTLGAHEHFVTSLDFHKAAPYVVTGSVDQTVKVWECR
NT seq 1233 nt   +upstreamnt  +downstreamnt
atggtgctctcacagagacaacgagacgaactaaatcgagcgatagccgattacctccgt
tccaatggctatgaagaggcatattcagttttcaagaaggaggcggaattagacatgaat
gaggagttggacaagaagtatgctggccttttggaaaagaaatggacttcagtcatcaga
ttacaaaagaaggttatggaattagaatcaaagttgaacgaggcaaaagaagagatcact
ttaggaggacccattggacagaagcgagaccccaaagaatggatcccccgccccccggag
aggtacgccctgagtggccacaggagccccgtcacccgggtcatcttccaccccgtcttc
agcgtcatggtctccgcttcagaggacgccacaataaaggtgtgggactacgagacggga
gacttcgagcgcaccctgaagggccacacggactccgtgcaggacatctctttcgaccag
actggcaagctgctggcctcctgttctgcggacatgaccatcaagctctgggacttccag
ggcttcgagtgcatccggaccatgcacggacacgaccataatgtttcgtctgtagctatt
atgcccaatggagatcacatagtatctgcctcaagggataaaaccattaagatgtgggag
gtggccactgggtactgcgtgaagacgttcaccggccacagagagtgggtgcgcatggtg
cggcccaaccaggacggcacgctgatcgccagctcctccaacgaccagacggtgcgcgtg
tgggtggtggcctccaaagagtgcaaggccgagctgcgggagcacgagcacgtggtggag
tgcatctcctgggcgcccgagagcgcacaccccaccatcctggaggccaccggctcagag
actaagaagagtggcaaacctggacccttcctgctttccggctccagagacaaaaccatc
aagatgtgggacgtgagcattggcatgtgccttatgacactggtggggcatgataactgg
gtgcgtggaatcctcttccaccccggcgggaagttcatcgtaagctgtgctgacgacaag
accctgcggatctgggactacaagaacaagcgctgccagaagaccctgggtgcccatgag
cattttgttacctctctggatttccacaaggcagctccctatgtcgtcactgggagtgta
gatcaaacagtaaaagtgtgggagtgtcgctga

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