Alosa sapidissima (American shad): 121684171
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Entry
121684171 CDS
T11137
Symbol
ddx6
Name
(RefSeq) probable ATP-dependent RNA helicase ddx6
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
asad Alosa sapidissima (American shad)
Pathway
asad03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
asad00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
121684171 (ddx6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
asad03019
]
121684171 (ddx6)
03036 Chromosome and associated proteins [BR:
asad03036
]
121684171 (ddx6)
Enzymes [BR:
asad01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
121684171 (ddx6)
Messenger RNA biogenesis [BR:
asad03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
121684171 (ddx6)
mRNA degradation factors
5'-3' decay
Decapping complex
121684171 (ddx6)
Chromosome and associated proteins [BR:
asad03036
]
Eukaryotic type
Gene silencing
piRNA pathway
121684171 (ddx6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CMS1
SNF2-rel_dom
Motif
Other DBs
NCBI-GeneID:
121684171
NCBI-ProteinID:
XP_041920071
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All DBs
Position
15:complement(5274048..5299150)
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AA seq
480 aa
AA seq
DB search
MSTARTESHVILGLSNQNGQLRASGKPAGGPGGGSPQQPASQVKASSTINNGSSQPAPTN
TVIKPGDDWKKNLKVPPKDMRMRTSDVTATKGNEFEDYCLKRELLMGIFEMGWEKPSPIQ
EESIPIALSGRDILARAKNGTGKSGAYLIPLLERIDLKKDCIQAMVIVPTRELALQVSQI
CIQVSKHMGGVKVMATTGGTNLRDDIMRLDETVHVVIATPGRILDLIKKGVAKVSQVQMI
VLDEADKLLSQDFVLMMEETLSFLSKQRQILLYSATFPISVQKFMNSHLQKPYEINLMEE
LTLKGVTQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSSQRVELLAKKISQLGYSCFY
IHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKLGETYLHRIG
RSGRFGHLGLAINLITYDDRFNLKGIEEQLGTEIKPIPSSIDKSLYVAEYHSESGEAVKP
NT seq
1443 nt
NT seq
+upstream
nt +downstream
nt
atgagtactgcaagaacagagagccacgtgattttgggcttgtctaatcagaatggccaa
cttcgggcctcaggaaagccagcaggtggcccaggtggagggagtcctcaacaaccagca
agccaagtgaaagcctccagcacaatcaacaatggcagttcccagccagcaccaacaaac
acagtcatcaaacctggagatgactggaagaaaaacttaaaggtccctccaaaggacatg
agaatgagaacttcggatgtgaccgcaacaaaggggaatgaatttgaagattactgcttg
aagcgggaactgcttatggggatctttgagatgggctgggagaaaccttcccctattcag
gaggagagcattcctattgctttgtcagggagggacattctggccagagcaaagaacggc
actggaaagagcggcgcctacctcatccccttacttgaacgcattgacctaaagaaggac
tgcatacaagcaatggtcatcgttcctactcgcgagctggcactgcaggtgagtcaaatc
tgcatccaggtcagcaaacacatgggcggagtcaaggttatggcgactactggtggcacc
aaccttcgtgatgacatcatgcgacttgatgagactgtacatgtagtcattgccacgcca
ggaaggatcctggatctcatcaaaaagggagtggcaaaagtcagccaggtgcagatgatc
gttttggatgaggctgataagctcctgtcacaggactttgtgctgatgatggaggagact
ctgagcttcctatccaagcaaagacaaattctgctgtattccgctacttttcccatcagt
gtgcagaagtttatgaattcccatctgcagaagccttatgagattaacctaatggaggag
ctgactctgaagggtgtgactcagtattatgcctatgtcaccgaaaggcagaaagtacac
tgtcttaatactttgttctctaggctccaaattaatcaatcaataatcttctgcaactcg
tctcagagagttgagctcctggcaaagaaaatttctcaacttggctactcctgtttctac
attcatgcaaagatgagacaggaacaccgtaaccgtgtattccatgacttcagaaatggt
ctctgccggaatcttgtctgcactgatctcttcaccagaggaattgacattcaagctgtg
aatgtggtgataaactttgactttcccaagcttggagagacataccttcaccgtattggc
agatctggacgctttggacatttgggtctagccatcaatctgataacctatgacgatcgc
ttcaacctgaagggtatagaggagcagttgggaactgagatcaaacctatccccagcagc
atcgataagagcctctatgtggctgagtaccacagtgagagtggagaggcagtgaagccg
taa
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