Alosa sapidissima (American shad): 121684607
Help
Entry
121684607 CDS
T11137
Symbol
trpc2a
Name
(RefSeq) short transient receptor potential channel 2
KO
K04965
transient receptor potential cation channel subfamily C member 2
Organism
asad Alosa sapidissima (American shad)
Brite
KEGG Orthology (KO) [BR:
asad00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
asad04040
]
121684607 (trpc2a)
Ion channels [BR:
asad04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
121684607 (trpc2a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRP_2
Ion_trans
Ank_2
PKD_channel
Motif
Other DBs
NCBI-GeneID:
121684607
NCBI-ProteinID:
XP_041920600
LinkDB
All DBs
Position
15:complement(21456230..21464313)
Genome browser
AA seq
863 aa
AA seq
DB search
MENITSDQWKEIVNKKLHFPPELIAAIHEGNIVLVSKLLSTGDGIIRQLDDSEDRLWREA
LNLSIRLGNEDVMTTLFLGVKFDFRQIHEALLVAVDTNQPRIVKLLLDRLDQEKGNKMDV
RSFSTAIFDHSIDDSQFAPGVTPLTLASQKDLYEIVTMLTQRGHDIPLPHSISCICLECR
NARQYDLLKFSLSRINTYRGIASRAYLSVTAEDPMLSAFHLSRELRRLSKKEPEFKPQYL
HLEELCQEFAVELLAMCRNQSEVTTILNNYDADSDDDVDDQTFDEGIPNLSRLRLAVNYN
QKQFVTHPICQQVLSSIWCGNLSWWRGSKTAWKLLVSLAIFLTMPFLCLVYWVAPKSKFG
KTMKIPVIKFLLHSASYMWFLITLLGESIFMEIYRVDFSTRTQNFLHNSLHMVWVVGFFW
FECKEVWIEGLRSYFLDWWNILDMMVLSMYLASFALRVLIMLKGYFVCKDPNAVEDCVYF
TESVRKDWRQEDPQFLSEILFAVTSMLSFTRLAYILPAHESLGTLQISIGKMIDDMMRFM
FLLMIIGTAFLCGINNIYVPYVNTPHLGQFNETINFLFWTMFGVANQDYVDMPDYVLAEF
VGRIFYGIFTLVIVIVLLNMLIAMITNSFQKIEDDADVEWKFARSKLYLSYFREGLTMPV
PFNIIPSPKALFYSVRGTFRKLCCCCGRKSNPEYPPIASMSNSTLNNSEGRIPYRLQVMK
ALVQRYIETARREFEESKRKDIGNRITELSKVVGRVHAEMKDLHKTLVGRPGHNLVISGL
EGQETTTTTESSNVLSRYILGAKNNFRGFDNKTAWQGSASPLEVAVHIEDERTSEEKKDE
ETIEEKKDDGVRLEPQESRIADY
NT seq
2592 nt
NT seq
+upstream
nt +downstream
nt
atggaaaacatcacgtctgatcagtggaaagagattgtgaacaaaaagttgcattttcct
cctgagttgattgctgccatccatgagggaaatattgtgcttgttagcaagctgctgtcc
actggagatggcatcattcgccagctggatgattctgaagatcggctctggagggaggct
cttaacctttccatccgcctgggcaacgaagacgtgatgaccaccctttttctaggggtc
aagtttgacttccgtcagatccatgaggccctcctcgttgctgtggataccaaccagcca
cggattgtgaagctactgctcgaccggctcgaccaggagaaaggcaacaagatggatgtg
cgctccttctcgacagccatctttgaccactcaatcgatgactctcagttcgccccggga
gtgaccccgctaacactcgcctcccagaaagacctgtatgagatcgtcaccatgctgact
cagaggggacacgacatccccctgccccactccatatcctgcatctgcctggagtgccgc
aacgcccggcagtacgacctgctcaagttctccctctcccgcatcaacacctacagaggg
attgccagccgtgcctacctgtctgtcactgctgaggaccccatgctcagcgccttccac
ctcagccgtgagctccgcaggctctccaagaaagaaccagagttcaagccccaatacttg
catctggaggagttgtgtcaggagtttgccgtggagctgctagccatgtgccggaaccaa
agcgaggtcaccaccatcctgaacaactatgacgccgacagtgatgatgatgtagatgat
caaacatttgacgagggaatcccaaatttatcccgtctccgtctagctgtcaactacaat
caaaaacagtttgtgactcaccccatctgtcagcaagttctgtcctctatttggtgcggg
aatctctcctggtggaggggaagtaagactgcatggaagcttctggtgtctctcgccatc
ttcctcacaatgcccttcctctgtcttgtctactgggtggccccaaaatccaagtttggg
aagaccatgaagatccctgtgattaaattcctgctccattctgcatcttatatgtggttt
ctaatcactctcctgggcgagtccatcttcatggagatctacagagtcgacttttctacc
cgcacacagaacttcctgcacaactctctacacatggtttgggtagttggtttcttctgg
tttgaatgtaaagaggtttggattgaaggcctcagaagctacttcctggactggtggaac
attctagacatgatggtcctcagcatgtatctggcctcctttgccctgcgagtccttatc
atgctgaaaggatacttcgtatgcaaagacccaaatgcagtggaggactgtgtttacttc
acagagtcagtgagaaaggactggcgacaggaagacccgcagttcctctcggagatcctg
tttgcagtcaccagcatgctcagcttcacccgcctggcctacatcctgcctgcccatgag
tcgctgggaaccctgcagatctccatcgggaagatgattgacgacatgatgagatttatg
ttcttgctgatgataattggaactgcattcctctgtggaattaacaacatatatgtgcct
tatgttaacaccccacaccttgggcagtttaatgaaactattaatttcctattttggacc
atgtttggtgtggccaatcaggactatgtggatatgccagactatgtgctggctgaattt
gtggggagaatcttttatggaatattcactttggttatagtcattgtgcttctcaatatg
cttatagctatgatcaccaactccttccaaaagattgaggatgatgctgatgttgagtgg
aaatttgcccgctccaaactctacctgagctacttccgagagggcctcaccatgccagtg
cctttcaacatcattccttcacccaaagccctgttttactctgtgaggggtacctttcga
aagctttgttgctgttgcggtcgaaagagcaatccagaataccctccaattgcatcaatg
tctaacagcacactgaacaacagtgagggtcgaatcccatatcgtctgcaggtaatgaag
gccctggttcaacgctacattgagacagcacggcgtgagtttgaggagtcaaagcgcaaa
gatatcggaaacaggatcacagagctgagtaaggtggtgggaagagtacatgcagagatg
aaggacctccacaagacattggttggaaggccagggcacaacctcgttattagtggtttg
gaaggccaggaaacaaccaccacgactgagagcagcaacgtcctgagccgatacatcttg
ggtgccaaaaacaacttccggggcttcgacaacaagacggcctggcaaggcagtgcctca
cctcttgaggtggctgtacacatagaggatgaacggacaagtgaggaaaagaaggatgaa
gagacaatagaagaaaagaaagatgacggggtgcgcctagagccccaggagagtcgaata
gcagattactga
DBGET
integrated database retrieval system
