Alosa sapidissima (American shad): 121685195
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Entry
121685195 CDS
T11137
Name
(RefSeq) probable JmjC domain-containing histone demethylation protein 2C
KO
K11449
jumonji domain-containing protein 1C [EC:1.14.11.-]
Organism
asad Alosa sapidissima (American shad)
Brite
KEGG Orthology (KO) [BR:
asad00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
asad03036
]
121685195
Chromosome and associated proteins [BR:
asad03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
121685195
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tudor_KDM3B
PWWP_KDM3B
DUF7030
JmjC
FYVE
zf-UDP
Motif
Other DBs
NCBI-GeneID:
121685195
NCBI-ProteinID:
XP_041921523
LinkDB
All DBs
Position
16:complement(9882675..9959025)
Genome browser
AA seq
2856 aa
AA seq
DB search
MAVEGRPELVGKRFLCVSGEEPLGRGEIARCGWRAGVIRAVTSRDIDTPDFSVCVEFDHE
EWEKRQWIRVFEDFQIFLLEQGLVWASRTVGGLPCHGPNGSNGKPVLWPALSFRTLVGQA
SVGPVSVVEFFSDRQLEFHPRDVIHQPYQDEADILSPLLRDNPSLQEEVKAWLKQQKVQE
IFMQGKYSLNGLRVKVYRQDSATQWFTGIITQHDQHSSTMIVMNDQVLEPQNVDPSLVQV
MFIDDVVHSLLAGENVTARRRSRSNKTNPPTHGHLRGQSGSPGPMVSRPPLSSCPPVRLT
SERSAPLEEYGGEEEEDERMKDGRRGSPDIGRHEPSKSKCKPGVSKRRKGVKEEEEEDGE
RKEGTKRHRGLSGSDPYESNNTGVCPRLPDSSPPFDKTHKSHYASKPPAKREKSQSPVGP
EGWTQKKHPAPWAADEEAASQSANGKRQETEKPRPLLSQPANPSARCNGIVMETGAALEE
RRREGVEGGAEEAETRHDGVSHSEDSEAVSALLAYQESERMVSMETSACVVFNALPGECE
LPDSELPSDPEVKSSDYGTAEAPAPGSESDAGTGQQDELATRHPSPPGQGVAPDNAGGSD
KPRSPSDSRATIKGEQGPDAAPRPKSSPRPSSPPEDLRPRQHAATDKSRPKPSTSPESGR
HRNKRPGSSPNGAEHGLPHSGFKPQCGPGNPTPVPNQTPTTFSNKSPMASATLTKTHMPV
PIHTTAASTKLHAHTHTHTHTAVTPTKAPAAASSTKNSTHAANRSTVSSTPVKPHVSPIT
PTKTHSNQSRTSVLNPSPHKSLAKASNHTTNNTTPTKSPLIVDRNEPFTVYRDPALVGED
PDVPQPQGNVAYIHPSPHAGHGKHAASLPPARAALHTTQQASGNPSLTAPRATHSATHLS
PPPSAHSRHLLRTPSPSPQPPAALSSLGGHVLPAAPPHPSLPHHLLPSLLPALSPSAALL
AGHGPLGALGLGPHPLALPPSAALLGQTPLGLYPLLWPPYPNGTHPYTALGLSAGMTEGS
LKRNTPSPWLPQASLVESQGLRTPVPVRPASADPHHSVKNHNPHASPSVSKTTEEERKTL
TADALRGGVNAQIKADPDRGRNMVAKNGQMHAVSHAHTHRPFLSDSLPCRPKPSRAAAFE
PAAERCTSRYQEESRRILQESIEVAPFTAKLQPPPGQEREPPYPRAPPQERERDRERERE
RERERERERERERELHALRAPQAQPPAPSNYYSSLCSSVANEPPRRPAHAAELSALYERP
GSSSSVSLSISGSTFSISSHHSPLKAPHSKPPPLVKRHPEKEEGLLGKMSERLVHQASSL
EQHSQRLAERGGALPAGVSISSSSASFSASSSLRSMPSLHRAPIFHPPAPPMPARKEAGQ
GRLTPPTLTPVQPVCLPGGKFPEQQRPPTLQPELKRQASAAAGKRASDMAAKTAHQTYHQ
HQHHQHQHHQHQHHQHHQHQHHHHVPEVWRGPQHLDKPANGHGAAKQPSATASVIVRPSS
AKDSRTNDRLISALKQPERTRASGEHREVGRVGQTNAPSKEGCVQYKRGILWTPLDSVHC
PHTTPAKTDHTMSAVAIETGSKSYVVSTAVSMATGQPPRDRTPVPWRPGLAAEEDSRGTC
RAHADITSSSPISTSCAATPCRSSGDFMHLKKQRAALAAAQSRNSAHVAAHASHSHAASQ
ATSTGPHNASSTHPPEKDPALGASPPKRPRPAGTMPEGASQSSSSSPSNLSNGQPPPQAT
SSQAGNPVQNNYHKLKKAWLTRHSEEDSKGTGAPDAAGGTDGDTASPASNSTQPIRGQDD
RKSSSEDRKPGPDERKSMPEERKATQEDRKPPQEDRKSSMDEPKAGAEECKNAGGEKKGE
KRVFESSTESDSEEDSGDSGDNKGGDSRMKRQPKPTFKKKLNEQQKKKGDSEKEEDEVKP
NGTFRSAKEKTRLRMSSSNGIPRSVLKDWRKVRKLKQSGEAFLQDDACAEIGPNVQKCRE
CRVDRSRKSEEPNTSPVFCRFYYFRRLSYSKNGVVRVDGFSVPELSDEDAVRVWTTGVKN
GNEEEEEEEEVVEEEEEVQMDLETAKHILSHIGDKFCQLVKTENTAVTWIKKDTQMVWKR
AVRGVREMCDACEATLFSMHWACHKCGFVVCMDCYKARERKSARDKELYAWFRCVKNQPH
DLKNLMPTQIVPSEILAELFTSMHCTREKWAIAAGCACPETHNTQNSKRAPTNGVSSVLT
SGALKAKSKQPACKAEVQNKKPNGPQRAEPNGVCGGDSDGASEGKLTPPESQSPLHFLAD
LAEQKAREEKKGGRALKPESGELVESLNGKCTDQGSTLRDLLTSTAGKLRLGSTDAGIAF
APVYNNSEQMTRPVHSMPNLLDDIIASVVENKIPASKMAKLGLKQEVMQDDEGKAKAQPI
KTEDEEKPVVEQDAAPPHDWLGGDGDHQLLWLKDPSHHGNYRLFRECWRQEKPVMVSGLH
KLLTPSLWKPEAFSRESSGHHGDLLNCRDGSVASGRVKEFWEGFEDMSRRPKTADGETAV
HRLKDWPSGEDLITAMPSRYDDVMRNLPVPQYCDPEGSLNLASRLPTFFVRPDLGPRLSC
AYGAFTTPEQSFGTVNLHAEVSDTVSVLVYVGPARGSGAPSKTAVQKRLEREDLEESVRR
RLRDPTEMPGALWHIYMSRDLHRVQEFLRKVWREGGGQKGSVGTGRDAEGESDGEVEPLR
EGSCYLSPALRQRLQQEQGVRCRTILQFHGDAVILPAGAMHQVLNLHSCVQVSTDFVSAE
HAHNSYYLTQELRTSKDLMNFEDKLQVKNILYHSVKDAIAALKRSSEETDSKSTLPEKEE
KKEREEKKEREEKKDKEEKKEEEKKEKEEEKGNEAS
NT seq
8571 nt
NT seq
+upstream
nt +downstream
nt
atggcggtggaggggcggccggagctggtcggtaaacggttcctgtgtgtgagcggtgag
gagccgctgggacgcggggagatcgcacgctgtggctggcgagctggggtcattcgtgct
gtcacaagccgagacatcgacactccggacttttcggtctgtgtggagtttgaccacgag
gagtgggagaagcggcagtggatccgggtctttgaggacttccagatctttctgctggag
caggggctggtgtgggcgagtcggactgtggggggcctcccctgccacgggcccaacggc
tccaacggcaagcccgtcctctggccagcgctgagtttccggacactggtaggacaggct
tcagtggggcccgtttcagtggtggagttcttctctgacagacagctggagtttcacccc
cgagatgtcatacaccagccatatcaggatgaagccgacattctgagtcctttgctgagg
gacaatccctctctccaggaggaggttaaagcctggctcaaacaacagaaggtccaggag
attttcatgcaagggaagtactcactgaacggactgcgagtgaaagtgtacaggcaggat
tcagccacacagtggttcactggcatcatcacccagcatgaccaacacagcagtacaatg
atcgtcatgaatgaccaggtgcttgagccacagaatgtggacccgtcgctggtgcaagtg
atgttcatagatgacgtagtgcactctttactggccggtgagaatgtcacggccagacgc
cgatcccgctccaacaagacaaacccccccacacacggtcacttgcgaggtcagtcgggc
agcccgggccccatggtgagccggccaccgctaagctcctgcccccctgtgcgcctgacc
tcggaacgcagcgcgccgctcgaggagtatggtggcgaggaagaggaggatgagaggatg
aaggatggccgcagagggtctcctgacatcgggaggcatgaaccttccaaaagcaaatgc
aagcctggtgtgagcaagaggaggaaaggtgtaaaggaggaagaggaggaggacggggag
aggaaggagggaactaagcgtcaccgaggactcagcggctcggacccctacgagagtaac
aacacgggcgtctgcccgcgcctcccagactcctctcctccgtttgacaaaacgcacaag
agccactacgcatcaaagccaccggccaagcgggagaaatcccagagtcccgtcgggccg
gaggggtggacgcagaagaagcaccccgccccgtgggctgccgacgaggaggccgcgagc
cagtcggctaacggcaaacggcaggagacggagaagccccgccccctgctgagccagccg
gccaatcccagcgctcgctgtaatgggatcgtcatggagaccggagccgcattggaggag
aggagaagggagggagtggagggaggggccgaggaggcggaaacccgacacgacggcgtg
tctcactccgaggactctgaggccgtctctgctctgctagcctatcaggagagcgagcgg
atggtttccatggagacgtcagcctgcgtcgtgttcaacgcgctgccgggggagtgcgag
ctacctgacagtgaactgccctctgacccagaggtcaagagttcagactacggcacggca
gaggccccggcccccggcagcgaatcagacgctggcaccgggcagcaggatgagctggcc
actcggcacccctcaccccccgggcagggtgtcgcccccgacaacgctggagggtcagac
aagcccaggtcccccagtgactctagagccactatcaaaggcgagcaggggcccgatgcg
gcccccaggcccaagagcagcccgcgtcccagcagccctcctgaggacctcaggcccaga
cagcacgctgccacggacaagagcagacccaaacccagcacgtcccctgagtcgggccgg
caccggaacaagcgtccaggcagctcgcccaacggtgcagagcatgggctgccgcactct
gggtttaaaccacagtgtggccctgggaaccctacaccggtccccaaccaaaccccaacc
accttctccaacaaaagccccatggcatctgccaccctcaccaaaacccatatgcctgtc
ccaatacacacaacagcagccagcaccaagctgcacgcccacacccatacccacacccac
acagctgtcacccctacaaaggcaccagctgcagcttcctccaccaaaaactccacccac
gccgccaatcgcagcacagtgagctccacccctgtaaagccccacgtctcccccatcacc
ccaaccaaaacgcacagcaaccagagccgcacatctgtgctcaacccatccccacacaag
agcctggccaaagcctccaaccacaccaccaacaacactactccaaccaagagtccactg
atcgtggaccgcaacgagcccttcacggtgtaccgcgacccggcgctggtcggggaggac
ccggacgtcccgcagccccaggggaacgtggcctacatccacccgtcccctcacgccggc
cacggcaaacacgccgcctcgctgccgcccgctcgggccgctcttcacaccacgcagcaa
gcgtccggcaacccctcgctgaccgcgccgcgggccactcacagcgccacgcacctgagc
cctccgccctccgcgcactcgcgccacctcctcaggacgccatcgccctccccgcagccg
ccggcggccctctcgtcgctgggcggtcacgtcctccctgcggcgcccccgcacccctcg
ctgccgcaccacctgctgccctcgctcctgcccgcactgtccccgtccgctgccctgctc
gccggacacggccccctgggcgccctgggcctcggcccgcacccactcgccctgcccccg
agtgctgcgctgctgggccagacccctctgggcctctaccccctcctgtggccaccctac
cccaacggaacgcacccgtacacggccctgggtctcagcgcaggcatgaccgagggcagc
ctaaagaggaatacccccagcccttggctgccccaggcctccctggtggagagccagggc
ctgaggaccccggtgcctgtgaggccggccagcgctgacccccaccactcggtcaagaac
cacaacccccacgccagcccgtccgtctccaaaaccacagaagaggagaggaagacattg
acggcggatgccttacgaggtggggtcaacgcgcagatcaaagctgacccggatcgcggc
cgaaacatggtggcgaagaacggccagatgcacgcggtctcgcacgcgcacacacaccgg
cccttcctgtccgactcactgccgtgccgacccaaaccgtcgcgggcggcagccttcgag
ccggccgccgagcgctgcaccagccgctaccaggaggagagccggcgcatcctgcaggag
agcatcgaggtggcccccttcaccgccaaactccagccccctccgggccaggagagggag
ccgccgtacccccgagcgcctccccaggagcgcgaaagggatagagaaagagagagggag
agagagagagagagggagagagagagggagagagagagggagctgcacgcgctccgagcc
cctcaggctcagccgccggcgccgagcaactactactcgtccttgtgcagcagcgtggct
aacgagccccccagacgcccggcgcacgccgccgagctctccgctctctacgagcggccg
ggcagcagcagcagcgtgagccttagcattagcggtagcacctttagcatctccagccac
cactcgccgctcaaggctccccacagcaagccccctcctctggtgaagcgccaccccgag
aaagaggagggactcctggggaagatgagcgagcgcctggtgcatcaggcctcctccctg
gagcagcactcccagaggctcgcggagcgaggcggcgcgctgccggcgggcgtctccatc
tcgtcctcctcggcgtccttttccgcgtcctcgtcgctccggtccatgccgtcgctccac
cgagcgcccatcttccacccgccggctcctcccatgccggccaggaaggaggcggggcaa
ggacggctgacccctcccactctcacgcccgtgcagcccgtgtgcctgccgggagggaag
tttccggaacagcagcggccgcccaccctgcagcccgagctgaaacggcaggccagcgca
gcagccgggaaacgagcctcagacatggcagccaagaccgcacaccagacgtaccaccag
caccaacaccaccaacaccaacaccaccaacaccaacaccaccaacaccaccaacaccaa
caccaccaccacgtccctgaggtgtggagaggcccacaacacctggacaaaccggccaac
ggacacggagctgccaagcagccgtccgccacagcctctgtcattgtgcggccatcttcg
gcgaaggactcgaggacgaatgaccgcctgatttcggccctgaagcagcctgagcgcacc
agagcgtccggcgagcacagagaggtgggccgcgtgggtcagactaatgcaccgtccaag
gaagggtgtgtgcagtacaagagaggcatcctgtggactcctctggacagcgtccactgc
ccccacaccaccccggcgaaaacagaccacaccatgtctgctgttgccatagaaactggt
agcaagtcttacgtcgtgtccactgctgtttccatggcaactggtcagcctccgagagac
cgcacacctgtgccttggagaccgggactggcggctgaagaagacagccgagggacctgc
agggctcatgctgacatcacttcctcttcccccatttctacttcctgtgcggccacgccc
tgccgctccagcggagacttcatgcacctgaagaagcagagggccgccctggctgccgcc
cagtccaggaacagcgcccatgtggcggcccacgcctcccactcgcacgccgcctcacag
gccacaagcaccgggccccacaatgcctccagcacccaccctccagagaaggaccctgcc
ctcggagccagcccacccaagcgccccaggccagcgggcaccatgccagagggggcctcc
cagagcagcagtagcagcccgagcaacctcagcaacgggcaacctccccctcaggccacc
agcagccaggcgggcaaccctgtccagaacaactaccacaagctgaagaaggcctggctc
acccgccactcagaggaggacagcaaaggcactggcgcccccgacgcagcagggggcacc
gacggggacacggctagccctgcctccaactccacccagccaatcaggggtcaggacgac
aggaagtcctccagcgaagacaggaagccaggcccagacgagaggaagtccatgccggag
gagcgaaaagccacccaggaggacaggaaaccacctcaggaggacaggaagtcgagcatg
gacgagccaaaggccggcgctgaggagtgcaagaacgctggtggtgagaagaagggggag
aagcgcgtgttcgagtccagcacggagagcgacagtgaggaggattcgggcgactcgggc
gacaacaagggaggagactccaggatgaagcgacagcccaagcccaccttcaagaagaag
ctgaacgaacaacagaagaagaaaggggacagtgagaaggaggaggacgaggtcaaaccc
aacggaaccttccggagtgccaaagagaagaccagacttaggatgtccagcagcaatggc
atccctcgctcggtgctgaaggactggcgtaaggtgcgtaagctgaaacagagtggcgag
gccttcctgcaggacgacgcctgcgccgagatcggccccaacgtgcagaagtgccgcgag
tgccgagtggaccgtagccgcaagtcggaggagcccaacacctcgcccgtcttctgtcgc
ttctactacttcagacggctgtcttacagtaagaacggagtggtgcgggtggacggcttc
tccgtcccagagctgtcggacgaagacgccgtgagggtctggaccacgggtgttaaaaat
ggcaatgaggaggaggaggaggaggaggaggtggtggaggaggaagaggaggtccaaatg
gacctggagacggctaagcacatcctcagccacatcggagacaagttctgccagctggtc
aagactgagaacacagccgtcacatggatcaaaaaagacactcagatggtgtggaagcgt
gcggtgcgtggggtgcgggagatgtgtgacgcgtgtgaggccactctcttcagcatgcac
tgggcctgccacaagtgtggctttgtggtctgcatggactgctacaaggccagagagcgc
aagagcgccagagataaggagctgtacgcatggttcaggtgtgtgaagaaccagcctcac
gacttgaagaatttaatgcccactcagatagtaccatcagaaatcctggcggagctgttc
acctccatgcactgcacgagggagaagtgggccatcgcggccggctgtgcttgccccgag
acacacaacacccagaactccaagcgggcccccaccaacggcgtctcttcggtgctgacc
agcggcgctctgaaggccaagagcaagcagccggcctgcaaggcggaggtccagaacaag
aagcccaacgggccacagagggccgagcccaacggcgtgtgcgggggggacagcgacggc
gcgtccgagggcaagctcactccccccgagtcccagtcgccgctccacttcctggctgac
ctggccgaacagaaggcccgtgaggagaagaaaggagggagggcactgaagccagagtcg
ggcgagctggtggagtctctgaatgggaagtgcacagaccagggctcgaccctccgcgac
ctcctgacctccaccgccggcaagctgcgtctggggtccacggatgctggcatcgccttc
gcacctgtttacaacaactctgagcagatgaccaggccggtgcacagcatgcccaacctc
ctggatgacatcatcgcctcggtcgtggagaacaagatcccggcctccaagatggccaag
ctgggcctcaaacaggaagtgatgcaagatgacgaggggaaggccaaggcgcagccaatc
aagacagaggacgaggagaagccggtggtggagcaggacgcagcgccgccacacgattgg
ctgggaggagatggagaccaccaactgctctggctgaaagaccccagtcaccacggcaac
tacaggctgttcagggaatgctggagacaagagaagcctgtgatggtatcaggtctccat
aagctgttgacccctagcctgtggaagcctgaggcctttagcagggagtcctccggtcac
catggcgacctgctaaactgcagggatggcagcgtggccagtgggcgggtcaaagaattc
tgggaagggtttgaggacatgagcaggcggcctaaaactgcagatggggagacggcagtg
cataggctcaaagactggccatcaggcgaggacttgataactgccatgccttccagatat
gacgacgtgatgagaaacctgccggtcccccagtactgtgaccccgagggctcgctcaac
ctggcctcccgcctgcccaccttctttgtgcggcccgacctcgggcccagactcagctgc
gcatatggagccttcacaacgccagagcagagctttggcacggtgaacctgcacgccgag
gtgtcggacacggtcagcgtgctggtgtacgtgggcccggcgcggggcagcggcgctccg
tctaaaacagctgtgcagaagcgtttggagcgtgaggatctggaggagagcgtgcggagg
aggctgcgggaccccacagagatgccgggagcgctgtggcacatctacatgagcagagac
ctccacagggtgcaggagttcctacgcaaggtgtggcgcgagggtggcgggcagaagggc
tcggtgggcactgggagagatgcggagggcgagtcggacggcgaggtggagcccctgcgc
gagggcagctgctacctgagtccggcgctgcgccagcgtctgcagcaggagcagggcgtc
cgctgccgcaccatcctccagttccacggcgacgctgtcatcctgcccgccggggccatg
caccaggtgctgaatctccacagctgtgtccaggtgtcgacggacttcgtctctgccgag
cacgctcacaactcctattacctgacccaggagctgcgcacctctaaagacctgatgaac
tttgaagacaaactacaggtgaagaacatcctttaccactcagtgaaggacgccattgcc
gcgctgaagagaagttctgaagagactgattctaagagcactctgccggagaaggaggag
aaaaaagagagggaggagaagaaagagagggaggagaagaaagacaaagaggagaagaaa
gaggaggagaagaaagagaaggaggaggagaaagggaatgaggcctcctga
DBGET
integrated database retrieval system
