Alosa sapidissima (American shad): 121685261
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Entry
121685261 CDS
T11137
Symbol
cfap43
Name
(RefSeq) cilia- and flagella-associated protein 43 isoform X1
KO
K24223
cilia- and flagella-associated protein 43
Organism
asad Alosa sapidissima (American shad)
Brite
KEGG Orthology (KO) [BR:
asad00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
asad03037
]
121685261 (cfap43)
Cilium and associated proteins [BR:
asad03037
]
Motile cilia and associated proteins
Tether/Tether head (T/TH) complex
121685261 (cfap43)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CC_Cfap43
Beta-prop_THOC3
Beta-prop_EML_2
Beta-prop_EML
WD40_CDC20-Fz
Beta-prop_WDR5
WD40_WDHD1_1st
CFAP43_N
WDR55
Beta-prop_WDR36-Utp21_1st
Beta-prop_WDR3_1st
WD40_Prp19
Beta-prop_WDR90_POC16_2nd
WD40
WD40_MABP1-WDR62_1st
Beta-prop_WDR36-Utp21_2nd
Beta-prop_ACSF4
Motif
Other DBs
NCBI-GeneID:
121685261
NCBI-ProteinID:
XP_041921631
LinkDB
All DBs
Position
16:complement(20266833..20294755)
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AA seq
1693 aa
AA seq
DB search
MYVMSYSVVRETQKLVHTDGGWKDMDALGNLEVRWVQGFTSRNVAFVDRKTACYACGCFV
VLLNIETKMRDFLQCPGRGIGTFAASGYLKILAFSDQKLNPSIYVYKYPELTLQCEIEGS
AQLEYTSLALSDTGPYLACCSSVPDHTITVWDWEKRVPLCSHAQMKEVFTILAFNPMSWH
QICAMSSSSLVVWNIERSDNLYILKQSVIDLPATDGSVVETEKGTSRDNNVKLSYLGPQM
PTSAIAGLVGKRADRFVPKCHVKPHLSPSCVCWSAASHLYVGCREGWLLRVNPESLLVSI
LHRPNHTQGDPNIPALEEGSFLTMAVHKDGLLVSGDDGFLRSLQVKGTVVEVSQTVELEE
PASSMCYSPNKESLLLATSAGNFYHYKPSQSDKAVRILEVLTGHFVAASSLHTEKNLYCV
SVRDSGELQLWSMDDGLCIASISLHVQATTLACCVVAQYAAVGTALGQVLFVDLSTKKHP
RLVHRIQLYHIPVEHLLFEHGGNFLIISGSDKNIFLLDARPSKGFEVIGYIEADGLVVSI
SALSVRERNLVRVGVVCGGRRGEQMQTGVKEGRRVMLFSLPSQESLAERASCVDQRGCIL
SELLQACYYETHFPLSSCALGLNMLYAYCHPKKTIQTYQLPEGVMGSSDSPVSVAPDGEV
EGHPLGPALLLMSPQHTWLATLGRDGLLHLRDSSNLDCYVQFQCHSSWLGGGRSLSFTTD
NQALLSTGLRDGSLVCLKYRQGIKGAGKSYGPSQSSPWSVVTQPESAILAENSALAHMAE
WDLATQSAPGSASEEGVRHRSDIDVTEQDDSYCSPTSELLSTATWLDKKLELVSKEENQK
FTEIKQNLRKSIKELRDTIQVMMRENEALSEMERLEQQEFNLDAKEKKRLQAEGEQEVQR
VRNEIEMENLAKSYLREVLKRECWDSMKVKGKAIKAFHSSYEVKNYPMKERTQTELDELL
RVENMRKIELADSNLQQEILEHKAHVLTEHEEEEEEEGSEAESVALCGSLSGRYGGTQPL
LHSQFNLHIREQKINQITLLQDVIYKVKSAFNKEFDNVYKQKEQEMHRVRERNKRITEIM
AELDVMEALWEPVLSVSERPERALTVDDSEIKVEKFLSLEQRQKEEEQRKEEEERRLEAK
GENLRERALGHMMGGVLEVKKEDILKMEVSQPEFMSRLEVQWTEEERKAHKDYEKKVKEL
QEEQEKHRKTLESEMKKLQTCIKEATQGFDETLTKLFERKVTSEMVIYQEELKIANLIHS
ILTEDEILNREKELHNKLETMRASKHNMGEELKKYKEDVDSFREMYDNIVAEDKLLDRGF
RKEFFDIPGHVVDQLYKLYKRRPRVHQMRTQTDVPSGGGVGLGQTQAEGLSLMLRAMEEL
DSQEYMPEGLDPAVWERFCNSRRTKVESEHQVKIKALTLAEMQAFLQRRTDEDENTRLEI
INLIEEINSLREEKMRFRLDIMVQILIKQGQVEVEAGDFVADYSDSLLLHRNVVEDLNAT
IRMLGEQKIASMVECKDFRKGIIQQEWEHKRMHMLMEDLNNKARDIQMLRVSQELQEHLG
EIDQDSRMSKQVSILEKTIAQQEQTHLKNVQNCKRLIKQLEKQTSAMVDKNAALDTQLAS
MQITVAERRTIYHTIAMEENQEAEAEQRYQEILERKRLVELAKEQAQDVAVLRAEVERMR
MKTFPALGQFKHS
NT seq
5082 nt
NT seq
+upstream
nt +downstream
nt
atgtacgtcatgagttattcagttgtcagggaaacccagaaacttgtacacactgacggc
ggctggaaagatatggatgctttaggaaatttagaagtcaggtgggtgcagggtttcacc
agccggaacgttgcatttgtggataggaaaacagcatgttacgcctgtgggtgttttgtt
gttctcctgaacatcgagacgaagatgagggactttctccaatgccccggtcgtgggatc
gggacatttgcagccagtggatatttgaagattttggctttttctgaccaaaaactcaac
ccctctatttatgtctacaagtatccagaacttactctacagtgtgagattgaaggctca
gctcaactggaatatacatctcttgcactaagtgacactggtccttacctggcttgttgc
tcatctgtacctgatcacaccatcactgtctgggactgggagaaaagggtgccattatgc
agccatgctcaaatgaaagaggtcttcacgattttagcattcaatcccatgagctggcac
caaatctgtgcaatgagctccagctcactagtggtctggaacattgaaagaagtgataac
ctttacattttaaaacaaagtgtaatagacctcccagccacagatggcagtgtggtggag
acagagaagggcacctcccgggataacaatgtgaagctttcataccttggccctcagatg
cccacttctgccattgctgggcttgtaggcaaacgtgcagacagatttgtgcccaagtgt
catgtgaagcctcacctgagccctagctgtgtgtgttggtcggctgcgtctcacctgtat
gtgggctgcagagagggctggctgctcagggtcaacccagagtctcttctcgtctccatc
ctgcacaggccaaatcacacacagggggatcctaacattccagccttagaggagggcagt
ttcctaaccatggcggtgcacaaagatggacttctcgtgtcaggagacgatggttttctg
cgcagtctgcaggtaaaggggactgtggtggaggtctcacagacagtggagctggaggag
ccggcctccagcatgtgctactcgccaaacaaggagagtctgcttctggccaccagtgct
gggaacttttaccactacaaaccctctcagtcggacaaggcagtgaggatccttgaggtc
ctgacaggacactttgtggctgcgtcgtcactgcacacagagaagaacctatactgtgtg
tctgtgagagacagtggggagctgcagctgtggtctatggatgatggactctgcattgca
tccatcagtctgcatgttcaggccacaactctggcctgttgtgtagtggcgcagtatgca
gccgtgggaactgctttgggccaggtcctgtttgtggacctgtcgacaaagaagcatcct
cgtctggtgcaccgaatccagctctaccacatacctgtagaacacctgctgtttgagcat
ggtgggaacttcctgatcataagtggctcagacaaaaacatcttccttctggatgccagg
ccgtccaaaggctttgaggtcatcggatatatagaagctgatgggttggtggtgtccatc
tcggctctgagcgtgagggagaggaatcttgtgagggtgggggtcgtgtgtggaggaagg
aggggtgagcagatgcagacaggagtgaaggaggggaggagggtcatgctcttctctctg
cccagccaggagtccttagcagagcgagcttcctgtgtggaccagagaggttgtatactc
tctgagctgctgcaggcgtgctactatgagacacacttccccctgtcctcctgtgctctc
ggcctcaacatgctatatgcctactgccatcccaaaaagactattcagacataccagctt
ccagagggcgtgatgggatcctctgactcgcccgtgtctgtggcccctgacggtgaggtg
gagggccaccccctggggcccgccctgctgctcatgtccccccaacacacctggctggcc
accttgggccgggatggcctgctgcacttgcgagactcctccaacttggactgctatgtg
cagtttcagtgtcactctagctggctgggtggcgggcgaagcctctccttcaccacagac
aaccaggctctcctcagcactggcctgagagatggcagcctagtgtgcctcaaatacagg
caggggatcaagggggctgggaaatcttacggcccctcccagtcgagtccgtggtcggtg
gtcacccagccagagtcggccatcttagctgagaactctgcccttgcccatatggcagag
tgggatctggctacgcagtccgctcccggctcagccagtgaggagggcgtgcggcacagg
tctgacattgatgtgacggaacaagatgacagctactgcagccccacctctgaattgctc
tctaccgccacctggctggacaaaaagttggagctggttagtaaagaggagaaccagaag
ttcactgagataaagcagaatctgaggaagtccatcaaagaactcagagacaccatccag
gtgatgatgagggagaatgaggccctgtctgagatggagcgcttggagcaacaggagttt
aatttggacgcaaaagagaagaaacgactacaggcagagggagaacaagaggttcagagg
gtgaggaatgagattgagatggagaacttggcaaagagttacctgcgagaggtgttgaag
agagagtgctgggactccatgaaagtcaaaggcaaagctatcaaagcgttccactcatcc
tatgaggtgaagaactaccccatgaaggagcggactcagacagagctggatgagttactg
cgagtggagaacatgaggaagatcgagcttgcagactctaacctccagcaggagatcctg
gagcataaggctcacgtgctgacggagcacgaggaagaggaggaggaggaaggctctgag
gcagagagcgtggccctgtgtggcagcctgagtggccggtacggaggcacccagcctcta
ctccacagccagttcaacctgcatatcagagagcagaagatcaaccagatcaccctgcta
caggatgtcatctacaaggtgaagagcgccttcaataaggagtttgacaacgtgtacaag
caaaaggagcaggagatgcatcgtgtgcgggagaggaacaagcgcatcacagagatcatg
gccgagctggatgtgatggaggctctatgggagccagtgctctccgtcagtgagaggcca
gagagggcgttgacagtggacgactcagagatcaaagtggagaagttcttgagcctggag
cagaggcagaaagaggaggagcagagaaaagaggaggaggagaggagactggaggcaaag
ggtgagaatctcagagaacgcgctctgggccacatgatgggtggagtgctagaggtcaag
aaggaggacatcctaaagatggaggtctctcaacctgagttcatgtccaggctagaagtg
cagtggacagaagaggagaggaaggcccacaaggattacgagaagaaggtcaaagagctg
caggaggaacaggagaagcaccgcaagactttagaatcagagatgaagaaactgcaaacg
tgcatcaaagaggcaacccagggctttgatgaaaccctcacaaaactgtttgagaggaag
gtgacgtccgaaatggtgatataccaggaggagctgaagatcgccaacctgattcactcc
atactgactgaggatgagattctcaacagggagaaggagctgcataacaagctggaaacg
atgagagcttcaaagcataacatgggcgaggagctgaagaagtacaaggaggatgtggac
tctttcagggagatgtatgacaacatcgtggcagaggacaagctgcttgaccgtgggttt
cgtaaggagttctttgatatccctggacatgtagtggatcagctgtacaaactttataag
agaaggcccagggttcaccagatgcggacgcagacggacgtgcccagcggagggggtgtt
gggttgggccagacgcaggctgagggcctgtctctcatgctgagggcaatggaggagctg
gactcacaggagtacatgcccgagggcctggacccggccgtgtgggagcgcttctgcaac
tccaggaggaccaaggtcgagagtgagcaccaggtgaagataaaggccctgaccctggca
gagatgcaggcctttctacagcggagaaccgacgaggatgagaacactcgtctggagatc
atcaatctcatcgaggagattaacagtctccgtgaggagaagatgcgtttccgtctggac
atcatggtgcagattctgatcaagcagggccaggtggaggtggaggctggggactttgtg
gccgactactccgactctctactgctgcaccgcaatgtggtggaggacctcaacgccacc
attaggatgctgggagagcagaagatcgccagcatggtggagtgtaaggacttccggaag
ggcatcatccagcaggagtgggagcacaagagaatgcacatgctgatggaggacctcaac
aacaaggctcgcgacatccagatgctacgagtgtcccaggaacttcaggagcacctgggt
gagatagaccaggacagcagaatgtcaaagcaggtttccattctagagaaaactattgca
caacaagaacagacacacctgaagaacgtgcagaactgtaagcgcctgattaagcagctg
gagaagcagacatctgcgatggtggataagaacgccgctcttgacacacagttggccagc
atgcagatcacagtggctgagaggaggaccatctatcacaccatagccatggaggagaac
caggaggccgaggcagagcagcgctaccaggagatcttggagcgcaagcgtctggtggag
ctggccaaggagcaggcccaggacgtggcagtgctgcgtgcagaggtggagaggatgagg
atgaagaccttccccgcacttggccagttcaagcacagctga
DBGET
integrated database retrieval system
