Alosa sapidissima (American shad): 121685322
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Entry
121685322 CDS
T11137
Symbol
pdlim1
Name
(RefSeq) PDZ and LIM domain protein 1
KO
K23353
PDZ and LIM domain protein 1/2/3/4
Organism
asad Alosa sapidissima (American shad)
Pathway
asad04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
asad00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
121685322 (pdlim1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
asad04990
]
121685322 (pdlim1)
Domain-containing proteins not elsewhere classified [BR:
asad04990
]
LIM domain-containing proteins
PDZ-LIM family proteins
121685322 (pdlim1)
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GFIT
Motif
Pfam:
DUF4749
PDZ
LIM
PDZ_6
PDZ_2
Arc_trans_TRASH
CCHC_ZFPM2
Motif
Other DBs
NCBI-GeneID:
121685322
NCBI-ProteinID:
XP_041921716
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All DBs
Position
16:28108202..28116634
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AA seq
320 aa
AA seq
DB search
MPLRVVMQGPGPWGFRLVGGKDFEQPLTVSRVTLGSKAAQANLCIGDMILAIDGEATDGM
THLEAQNKIKGCVEEMVLSVDRSESKMWSPLASDEGKTNPYKMNLASEPQEVKHIGSAHN
RSAMPFSPGGPKVVTSQYNNPAGLYSSENIKDFNSAVDDVKTVAAANESANVPDDAKAAG
KPGIPADSEVYKMLQENQESNEPPRQSTSFKVLQEILETGDPDKPSGFRSVRPPTNKMGA
SLGKADKLPICDKCGSGIVGIVVKLRDKLRHPECYTCTDCDVNLKQKGHFFVEDKIYCEK
HARERVTPPEGYDVVTVFPK
NT seq
963 nt
NT seq
+upstream
nt +downstream
nt
atgcccctccgggttgttatgcagggtcctgggccttgggggttccgtctggtcggtggg
aaggattttgaacagcccttgaccgtctcacgtgttacccttgggagtaaagcggcccag
gccaacctctgtatcggagacatgatcctggccatcgatggggaggcaactgacggcatg
acgcacctggaggcccagaacaagattaaaggctgtgtggaggaaatggtcctctctgtc
gataggtcagaatctaaaatgtggtctccactagcatcggatgaaggcaagaccaaccct
tacaagatgaacctagcgtcagaaccgcaggaggtgaaacacataggctctgcccacaac
aggagtgccatgccattctccccaggtggacccaaggtggtcaccagtcagtacaacaac
ccagccggcctgtactcctcagagaacatcaaggactttaacagtgctgtggacgatgtc
aagactgttgccgcagccaacgaatctgccaatgtgccagatgacgctaaggctgctggg
aaacctgggattcccgctgactcggaagtgtacaaaatgctgcaagagaaccaagagtcc
aacgagccgccgcgacagtctacatcttttaaagtgctgcaggaaatccttgaaacaggc
gaccccgacaaaccctcaggcttcaggagcgtgaggccccccaccaataaaatgggtgcc
tccctgggaaaagcagacaaactacctatctgtgacaaatgcggctcagggattgtgggc
atcgtagtgaagctgcgagacaagttgcgccacccagagtgctacacgtgcaccgactgt
gatgtcaacctcaagcagaaaggccacttttttgtggaggacaagatctactgcgagaag
catgcgcgtgaacgagtcacgccacccgagggctatgacgtcgtcacagtcttccctaag
tag
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