Alosa sapidissima (American shad): 121685327 Help Entry 121685327         CDS       T11137                                  Symbol msh6 Name (RefSeq) DNA mismatch repair protein Msh6   KO K08737   DNA mismatch repair protein MSH6 Organism asad  Alosa sapidissima (American shad) Pathway asad03430   Mismatch repair Brite KEGG Orthology (KO) [BR:asad00001]  09120 Genetic Information Processing   09124 Replication and repair    03430 Mismatch repair     121685327 (msh6)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03400 DNA repair and recombination proteins [BR:asad03400]     121685327 (msh6) DNA repair and recombination proteins [BR:asad03400]  Eukaryotic type   SSBR (single strand breaks repair)    MMR (mismatch excision repair)     Mismatch and loop recognition factors      121685327 (msh6) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  MutS_V MutS_III MutS_I PWWP MutS_IV MutS_II Motif Other DBs NCBI-GeneID:  121685327 NCBI-ProteinID:  XP_041921723 LinkDB All DBs Position 16:17574335..17585139 Genome browser AA seq 1382 aa AA seqDB search MAKQSSLFNFFTKSPPAAKSKPSPSPVEADLPSSVQKSNTSPKEEAKQAAKSGKKTPAKP KATSTKAGLNNLFGKTTPSNVVRESPSCTFSAGGLVWTKLEGHPWWPCMVVPQPLSGQQM RGKGRDQRLHVHFFDEPPTRGWVSTKYVREYQGSNSTEAKSGGLFFSGKPVIRRAMELAD AAMAKSTEERLKMPLCTDPSDDEEDEEDEMEVDNSTVSDEAESEEEEVKSGRRLSRMATE KGQKSKRRRIVVASDSEDSGDEFKPDKAEGSSEEDEDGASSGEEEVEEEEEESEPETEPD SPVKPLKRKRPTEKPAKAKPKALSPSEPPKRNVSAASSASAGAKSKLSAFSAPTTFDSES SGAGGMEGAVTVWDHEKLEWLQEGRRKDTRRRRQSEEDYDPTTLYVPDDFLNRTTPGMRR WWELKSKMFDAVLFYKVGKFYELYHMDAVIGVNELGLTFMKGAWAHSGFPEIAFGRFSDV LVQKGYKVARVEQTETPDMMEARCKKMARPTKFDRVVRREVCRVITRGTQTYSVLDGEPS ESHSKYLLSIKERAEGEGGSGQSHTYGVCFVDTSVGQFYVGQFRDDRHCSRLRTLAAHYT PAQVLFEKGNPSAETRKILKASLSSAIQEGLSASSQFWDAQKTLKALAEENYFKESAEKS EDSGGAALPSTLKSMTSESDSLCLTPKEGYELALSALGGCIFYLKKCLVDHELLSMANFE EYVPVDVEMEKSEGSSSFFAKTRQRMVLDGVTLANLEILQNGSTGGLEGTLLERLDTCCT PFGKRLLKQWLCAPLCNPSSISDRLDALEDLIGVPAQASEVTDLLKKLPDLERLLSKIHS IGMPAKGQDHPDSRAVMYEEVVYSKRKIVDFLAALEGFKAMQEIVAVLSAVTEGFRSKML RQVLVLKTDDGEGLFPDLSPELKRWDTAFDHQKARNTGVITPKAGFDPEYDQALSGVKDC ERNLQEYLDRQKKRLGCKTLSYWGTGRNRYQMEVPDSVSERNIPEEYEVRSTKKGWKRYS TREIERWFSELQSWEEKRDAALKDCMRRLFYNFDKNYRDWQTAVECMSVLDVLLSLSRYS QAGDGPMARPEVLLPGSDQDASPFLDLRGSRHPCVTKTFFGDDFIPNDIFIGCPGAEEDE GHWAGKESATCVLVTGPNMGGKSTLMRQCGLMVILGQLGCYVPAESLRFTPVDRVFTRLG ASDRIMAGESTFFVELSETASILLHGTRHSLVLLDELGRGTATYDGTAIASAVVKELAER ICCRTLFSTHYHSLVEDRAQDPSVRLGHMACMVENECEDSSQETITFLYKFIGGACPKSY GFNAARLASLPEAVIQSGHRKAKEFEKSTVTLRLFRKLCAFAEDPSAGLEQFTPLVEMIG SL NT seq 4149 nt NT seq  +upstreamnt  +downstreamnt atggcgaaacagagttcacttttcaacttttttactaaatcaccgcctgctgctaaaagt aagccaagtccatcacctgtcgaggctgatttgccttcctcggtgcagaagtctaacaca tctccaaaagaggaggccaaacaagcagcaaaatccggcaaaaagacgccggcaaagccc aaggcaacctcaacaaaagcaggcttaaataacttgttcgggaaaacaactccttcaaat gttgttcgagaaagtccatcatgcaccttcagtgccggtggtctggtgtggacaaagctg gaagggcacccctggtggccctgtatggtggtgccccagcctttaagcggccaacagatg cggggcaagggccgagaccagcgcctccatgtccacttctttgatgagcccccaacccga ggctgggtcagcaccaaatatgtgcgagaatatcaaggttcaaacagcactgaggctaaa tcaggaggcttgttcttcagtgggaagcctgtgattcggcgcgccatggagctggcagac gctgccatggccaaaagtacagaggagagactgaagatgccactgtgcacagatccatct gatgatgaggaagatgaggaagatgagatggaggttgacaactccaccgtgagtgatgag gcggagtctgaggaagaggaggtgaagtccgggcgacgcttatcccggatggccactgag aaaggccagaagtccaaacggcgccgcatcgtggtggcatccgacagcgaagactctggt gacgagttcaagcccgacaaggcggaaggcagcagcgaagaggatgaggacggtgctagc agcggtgaggaagaggttgaggaggaggaagaggagagcgagccagagaccgaaccggac agccccgtcaagcccctgaagcgcaaacgtcccacggaaaagcccgcgaaagccaagccc aaggcgctgtctccctcagaaccacccaagagaaacgtctcagccgcctcatctgcgtcg gcaggtgccaagtccaaactctcggccttctcagcgccgaccacctttgacagtgagagc agcggtgccggaggaatggaaggcgccgtgaccgtgtgggaccacgagaagctggagtgg ctgcaggagggccgcaggaaggacacgcggcggcggcggcagtccgaggaggactacgac cccaccacgctctacgtgccggacgacttcctgaaccgcaccacgccgggcatgcgccgc tggtgggagctcaagtcgaagatgttcgacgccgtgctcttctacaaggtgggcaagttc tacgagctctaccacatggacgcggtcatcggcgtcaacgagctgggcctcaccttcatg aagggcgcgtgggcgcactcgggcttccccgagatcgccttcggccgtttctcggacgtg ctggtgcagaagggctacaaggtggcccgcgtggagcagacggagacgcccgacatgatg gaggcgcgctgcaagaaaatggcgcggcccaccaagttcgaccgagtggtgcgccgcgag gtgtgccgtgtgatcacgcgcggcacgcagacctacagcgtgctggacggcgagccgtcc gagagccacagcaagtacctgctgagcataaaggaacgggctgagggcgagggcggcagc gggcagtcgcacacctacggcgtgtgctttgtggacacctcggtgggccagttctatgtg ggccagttccgcgacgaccggcactgctcacgcctgcgcacactggcggcccactacaca ccggcgcaggtgctcttcgagaagggcaacccgtcggccgagacgcgcaaaatcctcaag gcctcgctgtcttcggccatccaggagggactcagcgccagctcgcagttctgggatgcc cagaaaactctgaaagccctggccgaggagaactacttcaaagagagcgctgagaagagc gaagactctggaggtgccgccctcccgtccacactgaaaagcatgacctccgagagcgat tcattatgccttacccctaaagagggctatgagctcgccctctcggctcttggaggttgc atcttctacctgaagaagtgtctcgtggaccacgagctgctctccatggccaacttcgag gagtacgttccagtggatgtggagatggagaagtcggagggatcgtccagctttttcgcc aagacccgccagcgaatggtcctagatggggtgaccttggccaacctggagattctccag aatggatccacaggtggtctggaaggtactctgttggagcgtctggacacctgttgcaca cctttcggcaaaagacttctgaagcagtggctgtgtgctccactgtgcaacccgtcctcc atctcggatcgactggatgccttggaagatctcatcggcgttccggcccaggcgtcggag gtgaccgatctcctcaagaagcttccggatcttgagagactcctaagcaagattcacagc atcggcatgcctgcgaagggccaagaccaccccgatagccgggccgtcatgtacgaggag gtggtctacagcaagcgcaagatcgttgacttcctcgccgcgctcgaagggttcaaggcc atgcaggagatcgtggccgtcctgtcggctgtgaccgaggggttccgctccaagatgctc cgccaggtgctggtcctgaagacggacgatggcgagggactcttcccggacctctccccc gagctgaagcgctgggacacggccttcgaccaccagaaggctcgcaacaccggcgtcata acccccaaggccggcttcgatccggagtacgatcaggccttgagtggggtcaaagactgc gagaggaacctgcaagagtacctggaccgtcagaagaagaggctcggctgcaagactctc tcctactggggcaccggcaggaaccgctaccagatggaggtcccggacagcgtgtctgag cggaacatcccggaggagtacgaggtgaggtccaccaagaagggctggaagcgctactcc accagggagatcgagcgctggttctccgagctgcagagctgggaggagaagagggacgcc gcactcaaggactgcatgaggaggctcttctacaacttcgacaagaactacagggactgg cagacggccgtggagtgcatgtctgtgctcgatgttctcctgagcttgtcgcggtacagc caggcaggagacgggcccatggcccggccggaggtgctgctcccggggagcgaccaggac gcctcccccttcctggacctgcgggggtcccggcacccatgcgtcaccaagaccttcttc ggggacgacttcatccccaacgacatcttcatcggctgcccgggcgcggaggaggacgag ggtcattgggcagggaaggagagtgcaacctgtgtgttggtcactggacccaacatgggg ggcaaatccacactcatgagacagtgtgggctgatggtcatcctgggccagctgggctgc tacgtgcctgccgagtccctgcgcttcacccccgtggacagagtcttcacccgcctgggg gcctctgaccgcatcatggctggggagagtaccttctttgtggagctgagcgagacagcc agcatcctcctgcacggcaccagacactccctcgtgctcctcgacgagctgggtaggggc acagccacgtatgacggcacggcgatcgccagtgctgtggtgaaggagctggccgaacgg atctgctgccgcacgctcttctccacccactaccactccctggtggaggaccgcgcccag gacccctctgtcagactaggccacatggcttgcatggtcgagaatgagtgcgaagactcc agtcaggagactatcacgttcctctacaagttcatcggcggtgcttgtcccaagagctat ggcttcaatgctgccagactggccagcctcccagaggcggtcatccaatctggccacagg aaggccaaagagtttgagaagagcacggtcaccctccggctcttcaggaagctctgtgcg tttgctgaggatccctctgccggcttggagcagttcacccccctagttgagatgattggc agtctgtga

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