Alosa sapidissima (American shad): 121685459
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Entry
121685459 CDS
T11137
Symbol
nvl
Name
(RefSeq) nuclear valosin-containing protein-like
KO
K14571
ribosome biogenesis ATPase
Organism
asad Alosa sapidissima (American shad)
Pathway
asad03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
asad00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
121685459 (nvl)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
asad03009
]
121685459 (nvl)
Ribosome biogenesis [BR:
asad03009
]
Eukaryotic type
Pre-60S particles
Other pre-60S particles
121685459 (nvl)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
Nucleolin_bd
RuvB_N
AAA_16
AAA_2
AAA_22
AAA_5
AAA_14
AAA_33
TIP49
NPHP3_N
AAA_28
RNA_helicase
Mg_chelatase
AAA_18
nSTAND3
AAA_17
NACHT
TsaE
Vps4_C
AAA_3
ABC_tran
Rad17
Zeta_toxin
Viral_helicase1
IstB_IS21
nSTAND_NTPase5
DUF815
Sigma54_activ_2
DUF6203
Motif
Other DBs
NCBI-GeneID:
121685459
NCBI-ProteinID:
XP_041921938
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All DBs
Position
16:complement(22300093..22311453)
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AA seq
895 aa
AA seq
DB search
MGIDYKLKQRIEQYLKSKNSEYVDLSTLSTDLQKQYRFDYGRRNRTAFRIQVEKTYDVIN
KDADITTLEDKHLAKRARRQEEDGDDSSATDDTTDSEDDIQEHQHTNTMNNSLMSLYRKG
NPDENGTPTKGQALSPAPASGKDQPTGGASGKSTPLTPGTVVSGGGWFIDRRRRVEPENI
LIDLCDDGPSSPSTNKQTDVSMLETEKKKKGRVKKSKRRKQEEFQENDADIEAQILAKKA
KTKAPELQHSTVKFEDVGGNEETLAEVCKLLIHMRHPEVYQQLGVVPPRGFLLHGPPGCG
KTLLAQAVAGEMELPMLKVSAPELVSGVSGESEQKLRELFELAVKSAPCILFIDEIDAIT
PKREMASKDMERRIVAQLLTCMDDLNSLTIPAQVLVIGATNRPDSLDPALRRAGRFDREI
CLGIPDESARLRILKTLCRKLKLPEDFDYQKLARLTPGYVGADLMALCREAAMSAVNRVL
LELHESDFALADEGSSAIPADMPASQPPDAQEQTGDPEPQVQNDPTASTAEEPDQTGQCQ
PMETQQPVTTAIHEQGELQQLLWLLKRSESLSEEQLESLCILMSDFQASLASVQPSAKRE
GFATVPDVTWEDVGALQDIREELTMAILAPVRNPAQFKALGLSAPAGVLLAGPPGCGKTL
LAKAVANESGLNFISVKGPELLNMYVGESERAVRQVFQRGRNSAPCVIFFDEIDALCPRR
SGHESGSSARVVNQLLTEMDGLETRRQVFIMAATNRPDIIDPAVLRPGRLDKTLYVGLPP
PKDRHAILLTITKGGTKPQLEADVNLEEIAQDERCDCFTGADLSALVREASVNALRTHLY
SRSASTLTGHTFTSGPVEDILVSQQNFEDAFKKVRPSVSKKDQLMYEKLKESLSR
NT seq
2688 nt
NT seq
+upstream
nt +downstream
nt
atgggcattgactataagctgaaacagagaattgagcagtaccttaaatctaagaacagt
gaatacgtggacctttccacattatcgactgatcttcagaaacagtatagattcgactat
gggaggagaaacagaacagcctttagaatacaagtggagaaaacatatgatgtgataaac
aaagatgctgacatcacaacattggaagacaaacatttggcaaaacgagccagacgtcag
gaagaggatggagatgacagcagtgcaacagatgacactactgacagtgaagatgacatt
caggagcatcagcacacaaataccatgaacaactccttgatgtcgctgtaccgaaaaggg
aaccctgatgagaatggaacacccaccaaaggacaggcactcagcccagctccagcttca
ggaaaagaccagcctacagggggcgccagtggcaagtctacccctctaactccgggaaca
gtggtgtcgggtggaggctggttcattgacagaaggcggcgtgtggaaccagaaaatatc
ttgattgacttgtgtgatgatggacctagtagcccatccacgaataaacaaacagatgtt
tctatgctggagacggagaagaagaaaaagggcagagtaaagaagtcaaaaagaagaaag
caagaagaatttcaagaaaatgatgcagatatagaggcccaaattctggcaaaaaaagcg
aagaccaaagcgccggagctgcagcactcaacagtgaaatttgaggatgttggtggaaat
gaggaaacactggcggaagtctgtaagctactaatccacatgcgacatccggaggtgtac
cagcagctgggtgtggttcctccacgaggcttccttctccatggtcctccaggctgtggg
aaaaccctgctggcgcaagctgtagcaggggagatggagcttccgatgctgaaggtgtct
gcccctgagctggtgtctggtgtttcaggggagtcggaacagaagttgagggagctgttt
gagctggctgtgaagagtgccccttgcatcttattcattgatgaaatcgatgccatcaca
cccaagagagagatggcctccaaagacatggagaggaggattgttgcgcagctgttgacc
tgcatggatgacttgaactctctgaccattcccgcccaggttctggtgatcggggcaaca
aatcgtccggactctctggacccagccctgcgccgggcgggccgttttgaccgagagatc
tgcctgggcatcccagacgaaagtgctcgcctcaggattctgaagaccttgtgccgcaag
ttgaagctgccagaggacttcgactaccagaagctggcgcgtctcacgcccgggtacgtg
ggtgctgacctgatggcactgtgtcgggaggcggccatgagcgccgtcaaccgcgtcctt
ctggagctccacgagagtgactttgccctggcagatgagggaagcagtgccattcctgcc
gacatgcccgcctcacaaccacccgatgcccaggagcagactggggacccagagccccag
gtacagaatgatccaaccgccagcactgctgaggaacccgatcagacaggccagtgccaa
cccatggagactcagcagccagtgaccactgctatacacgaacagggggagctgcaacag
cttctttggctgctgaagaggagtgagtccctgtcagaggagcagctggagagcctctgc
attctgatgtcggacttccaggcatccctagccagcgtccagccctctgccaagcgcgag
ggcttcgccactgtgcctgatgttacgtgggaagatgtgggtgccctgcaggacatccgc
gaggagctgaccatggccatactggctcctgtccgcaatccagcacagttcaaagcactg
ggtcttagtgccccagcaggggtgttgctggctgggcctccgggatgtgggaagaccctt
ttggcaaaggcagttgccaatgagtctggcctcaatttcatctcagtcaaaggtcctgag
ttgctgaatatgtatgttggagaaagtgagcgggccgtgcgacaggtgtttcagagggga
cgtaactcggccccctgtgtgatcttctttgatgagatagatgcgctttgtccacgccgg
tctggacacgagtctggatccagtgctcgtgtggtcaaccagcttctcactgagatggac
ggtctggaaactcgccggcaggttttcattatggctgcaaccaataggccagatataatt
gatccggctgtgctaaggccaggccgcctggataagaccttgtacgtgggcctaccaccc
cctaaggaccgacatgccatcctgctcaccatcaccaagggtggtaccaaacctcagctg
gaggcagatgtgaatcttgaagagatcgcgcaggacgaacgttgcgactgcttcacgggg
gcagatctgtccgctctggtgagagaggcttcagtgaacgcgctgagaactcacctgtat
tcccgctcggcctccaccctcacaggccacacctttacctctggtccggttgaagacatc
ctcgtcagtcagcagaactttgaggatgcctttaagaaagtgcgtccatctgtgtcaaag
aaggaccaactcatgtatgaaaaattgaaagaatctctgagcagatga
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