Alosa sapidissima (American shad): 121687881
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Entry
121687881 CDS
T11137
Symbol
arhgef12a
Name
(RefSeq) rho guanine nucleotide exchange factor 12 isoform X1
KO
K07532
Rho guanine nucleotide exchange factor 12
Organism
asad Alosa sapidissima (American shad)
Pathway
asad04270
Vascular smooth muscle contraction
asad04625
C-type lectin receptor signaling pathway
asad04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
asad00001
]
09140 Cellular Processes
09142 Cell motility
04810 Regulation of actin cytoskeleton
121687881 (arhgef12a)
09150 Organismal Systems
09151 Immune system
04625 C-type lectin receptor signaling pathway
121687881 (arhgef12a)
09153 Circulatory system
04270 Vascular smooth muscle contraction
121687881 (arhgef12a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
asad04131
]
121687881 (arhgef12a)
Membrane trafficking [BR:
asad04131
]
Others
Rho GTPase associated proteins
Rho guanine nucleotide exchange factors (GEFs)
121687881 (arhgef12a)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RGS-like
PH_16
RhoGEF
PDZ
PDZ_6
PDZ_2
SOS1_NGEF_PH
Pept_S41_N_bact
PH
Motif
Other DBs
NCBI-GeneID:
121687881
NCBI-ProteinID:
XP_041922966
LinkDB
All DBs
Position
17
Genome browser
AA seq
1452 aa
AA seq
DB search
MSDTQPTITDRFPKKAIRSSSILSKDHPPDKKPKSDKGSLSPPHEFDPTDDQLQRKVGSE
VVEVRPESCGLVQRCVIIQKDENGFGLTVSGDNPVFVQHVKQDGAAMRAGVQTGDRIIKV
NGTLVTQSNHVEVVKLIKSGSYVALTVLGRPPGLPQIPLTEGDGELSSTLGGSAVSSPLS
TPTMAGERGFSTAEPPASPLHAWEENSSAHSQKVDILQRMLSKGLLELQSLKQEYSRNPS
PKLAREIQEAQKHIPHLQDQISKATAATQDGQCLDSDEGGVVEWDQGSNTDGVWSGHQNY
RPFSSPVGAGSRDGALRGSTPTDSPRTAPRNSLTSWNSPEADTEDNADLDPQAAVGSPSS
RPGPQIIGAEDDYFDSEPDQVNGQCSCFQSIDLLKSRPAHLAAFLHHVVSQFDPVPLLCY
LYAELYKQTNSKETRRVFMDFLTIFIDRGANLKVQVPESISSELERRRPELIPEELHRQY
IQQMQEKLLPDVQRHLEDFRQKRSMGLTLADGELTRLDTERLRDRVALERERSCAESIIS
KIEDVLLTSQPTEEDKSTTMQYVIFTYMKHLGVRVKEQRNLESKRVRINFLPKIKKSAKP
PEKEGEEKEKVKKTRFPSILGPQRRLSRNDATSIGRAMDQSKQRPQKQLSQPVMGVSEPL
DGIRLRGSQSSEGSELTYPAGFFGSPLCSPSTGGISDPTARDSDSGMSPFSGASRLADGL
LSDTMDSPLSPPSGLDLSPSNLEQLQEEERDSDRFLEGGTPKLLRRLNVVGLAETQSEDD
QGSEMDSDLDRPNWQQQVTREVLASLTPHQIKRQEVINELFHTERSHVRRLKVLDSVFYQ
KLTRDNILPPADVKSIFTNLEDIIQMHVSISDQMNSIRKKNDSPVVEQIGDDLLAWFGSS
EEERVKQAVATFCSNQPFALELIKTKQKKDTRFSSFMQEAESNRLCRRLQLKDIIPAEMM
RFTKYPLLLDNISKYTEEAEEKEKVKSAADCCRRILSYVNQVVKEAENKQRLEDYQRRLD
LSSLKQSENPMISEFKTLDLTKKKMVHEGPLSWKVNKDKTIELYTLLLEDILVLLQKQDE
RLVLKCHSKNLAGTADTKHIFSPVIKLSTVMVRSVATDNRSFFVLSMSDNGAQIYELMAQ
TVSEQRTWQRQISQRAEAMKVKPHSVIPLPQPDGERDGVDLISAGVSKLGKDSDRLSSGS
AHSTVDQSAVSFTGTMKPDEEDDVIPEEGSYLDAEGADGMAFLQQPPGGANDGRDLEPYR
AEEALRTLSSLKQVLLAQLMTQEESSRGGRGSGSRLLRTTSLRTPAADSPSRAAIENGSG
RAAEPRADRPLPQDLASGDTGFFEAAEDYAGYLVLEGFGGSGESSTDDELAVGAKGLALS
RGCVGDSGISLRCPSGYPTGSISTFSRQVFTHLRNLQASLNQLKEMETKYFSLLRQRQAG
PTEDPEESKDKR
NT seq
4359 nt
NT seq
+upstream
nt +downstream
nt
atgagtgacacacagcccacaatcactgacaggtttcctaaaaaagcaatcagaagcagc
agtattctcagcaaagaccaccccccagacaagaagcccaagagtgacaaaggctcactc
tcacccccccatgagtttgaccctacagacgatcaactgcagaggaaagtaggcagtgag
gtggtggaagtccggcctgagtcctgcgggcttgtgcagagatgcgtcatcatccagaaa
gatgagaacggcttcgggctgactgtgagcggagacaaccctgtgtttgtacaacacgtc
aagcaagatggagctgctatgcgagctggtgttcagacgggggacaggatcattaaggtt
aacgggaccttagtaacacaatcaaatcatgtggaggttgtcaagttgataaaatcgggc
tcgtatgtggccctcactgttttggggcgtccccctgggctgccccagattccgctgaca
gagggcgatggcgagctgtcctccacgctggggggctcggccgtctcctctcccctctcc
acccccaccatggccggggagaggggcttcagcaccgcagagccccccgcctcgccgttg
cacgcctgggaagagaacagcagcgcacacagccaaaaggttgacatcttgcagaggatg
ttgtcgaaggggctgctggagttacagtccttgaagcaggagtacagtcggaacccctcc
cccaaacttgcacgtgagatccaggaggcgcagaagcacattccacatctgcaggaccag
atcagcaaagccaccgcagctacgcaggatggccagtgtttggacagtgatgaaggtggt
gtggttgaatgggaccagggcagcaacactgacggtgtctggagtggccatcagaactac
cggcccttcagttccccagttggggcggggtctagagatggggccctcagaggctccacc
cccactgacagcccccgcactgcgccacgaaacagcctcacatcctggaactctccggaa
gcagacactgaggataacgcagacctggacccccaagcagcggtggggagcccctcgtct
cgtccaggcccccagattattggagcagaggatgactactttgactctgaacccgaccag
gtgaatggccagtgcagttgtttccagagcattgatctgctgaagtctcggcccgcccat
ctcgctgctttcctgcatcacgtggtgtcacagtttgaccctgtacctctgctctgctac
ctgtatgctgagttgtacaagcagaccaactccaaggagacacgccgggtcttcatggac
ttcctcaccatctttatcgaccgaggagcgaacttgaaagtgcaggttccggagtccatt
tcttcggagctggagagaaggcgtcctgagctgattccagaggagctgcacagacagtac
attcagcagatgcaggaaaaactcctaccagacgtacagcgccacctagaggacttcagg
cagaagcgcagtatgggcctgacgctggctgacggggagctgacccgtctggacacggag
cggctcagagaccgagtggccctggagagagaacggtcctgtgcagagagcatcatcagc
aagatagaggacgtgctgttgacctcccagcccacagaggaagacaagagcaccaccatg
cagtatgtgatcttcacctacatgaagcacttgggtgtcagggtgaaggagcagcgcaac
ctggagtccaaacgggtccgcatcaacttcctgcccaagatcaaaaaaagcgccaagcct
ccagagaaagagggagaggagaaggagaaggtcaagaaaactcgatttcccagcatcctc
gggccacagaggcgtctcagtcgcaatgatgcaacgtcaataggtcgtgcgatggaccag
agtaagcagcgtccccagaagcagctgtcccagccggtgatgggcgtgtcggagccgctg
gacgggattcgtctgaggggcagccagtccagcgagggctcagaactcacctacccagcc
ggattcttcgggtcacccctctgcagcccttcaaccgggggcatctccgaccccaccgcc
agagactccgacagtggcatgtctcccttctctggggcatcgcggctggccgatggactg
ctctctgacaccatggacagcccactgtccccgcccagcggcctagacctcagccccagc
aacctggagcagctccaggaggaggagagggatagcgacaggtttctggagggaggtaca
cccaaactgctgagaaggctgaatgtggtgggcttggcagagacccagagcgaggacgac
cagggctcggagatggactctgacctggaccgacccaactggcagcagcaggtgacccgc
gaggttctggccagtctaacgccccaccagatcaagagacaggaagtcatcaacgagctg
ttccacacagagcgctcccacgtgcgcaggctgaaggtgctggactcggtcttctaccag
aagctcacacgagacaacatactgccccctgctgacgtcaaaagcatcttcaccaacctg
gaggacatcatccagatgcatgtctccatatcggaccagatgaactccatccgcaagaag
aacgacagccctgtggtcgagcagattggagatgacctgttggcctggtttgggagcagt
gaggaggagcgggtgaagcaggcggtggccaccttctgcagtaaccagcccttcgccctg
gagctcatcaagaccaagcagaagaaggacacacgcttcagctcattcatgcaggaggct
gagagtaatcgcctgtgtcggcgactccagctgaaggacatcatccctgctgagatgatg
aggttcaccaagtatcctctgctcctggacaacatctccaaatatacagaggaggcagaa
gagaaggagaaggttaagagtgcggctgactgctgcaggcggatcctgagttacgtgaac
caggtggtgaaggaggccgagaacaagcagaggctggaggactaccagaggcgtttggat
ctgtcatctctaaagcagagtgagaaccccatgatctcggagtttaagaccctggacttg
accaaaaagaagatggttcacgaaggacccctgtcctggaaggtgaacaaagacaagacc
atcgagctctacacgctgctgctggaggacattctggttctgctgcaaaaacaggacgag
cgtctggtgctcaagtgccacagcaagaacctggcaggaaccgccgacaccaaacacatc
tttagccccgtcatcaaactcagcaccgtcatggtccggtcagtcgccacagataacagg
tccttctttgtgctgtccatgtcggacaacggagctcagatctacgagttgatggcccag
actgtgtccgagcagaggacgtggcagcgtcagatcagccagagggcagaagccatgaag
gtgaagccacacagtgtcatcccactgcctcaaccagatggcgagagggacggtgtggat
ctgatctcggcaggtgtgtccaaactagggaaggactctgaccgtctctcctcaggaagc
gcccactctacagttgaccagagcgctgtgtccttcacagggacgatgaagccagatgag
gaagacgatgtcatcccagaggaaggctcgtacctggacgcagagggggctgatgggatg
gcattcctccagcagccgccgggcggggccaatgacggcagggatttagaaccctacagg
gcagaggaggcactcagaaccttgtcgtcactgaagcaggtgttgctggcgcagctcatg
actcaggaggagagctctcgcgggggccgcggctcgggcagccgtctcctgaggaccacg
tcgctgcgcacccccgccgccgactcccccagcagggcggcgatagagaacggctcaggg
agggccgccgagcccagagcggaccggccgctgccgcaggacctcgcctccggggacacg
ggcttcttcgaggcggccgaggactatgcaggttatctggtactggagggcttcgggggt
tcgggcgagagcagcacggacgacgagctggcagtgggggccaagggactggccctgtcg
cgcggctgcgtgggcgactcgggcatcagcctgcgctgcccctcgggataccctacgggc
agcatctccaccttcagccgacaggtcttcacacacctgcgcaacctacaggccagcctc
aaccagctcaaggaaatggagaccaagtactttagtctactgcgccaaaggcaagcaggc
ccgacggaggaccccgaggagagcaaagataagagatag
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