Alosa sapidissima (American shad): 121687956
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Entry
121687956 CDS
T11137
Symbol
lsm5
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm5
KO
K12624
U6 snRNA-associated Sm-like protein LSm5
Organism
asad Alosa sapidissima (American shad)
Pathway
asad03018
RNA degradation
asad03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
asad00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121687956 (lsm5)
09123 Folding, sorting and degradation
03018 RNA degradation
121687956 (lsm5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
asad03019
]
121687956 (lsm5)
03041 Spliceosome [BR:
asad03041
]
121687956 (lsm5)
Messenger RNA biogenesis [BR:
asad03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
121687956 (lsm5)
mRNA degradation factors
5'-3' decay
Lsm complex
121687956 (lsm5)
Spliceosome [BR:
asad03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
121687956 (lsm5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
Motif
Other DBs
NCBI-GeneID:
121687956
NCBI-ProteinID:
XP_041923129
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All DBs
Position
17:complement(17478047..17480224)
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AA seq
91 aa
AA seq
DB search
MAATPATNPSQLLPLELVDKCIGSRIHIVMKNDKEIVGTLLGFDDFVNMVLEDVTEFEIT
PEGRRITKLDQILLNGNNITMLIPGGEGPDV
NT seq
276 nt
NT seq
+upstream
nt +downstream
nt
atggcggcaacacctgcaacaaatccttctcaactgcttccactggaacttgtggacaaa
tgtattggttccagaattcacatcgtcatgaagaatgacaaagagattgtcggcacctta
ttgggttttgatgattttgtcaacatggtgctggaggatgttacagaatttgagatcaca
ccagaaggtaggaggataaccaaactggaccagattctgctaaatggcaacaacattaca
atgcttattccaggaggtgaaggcccagacgtttga
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