Alosa sapidissima (American shad): 121688002
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Entry
121688002 CDS
T11137
Name
(RefSeq) partitioning defective 3 homolog isoform X1
KO
K04237
partitioning defective protein 3
Organism
asad Alosa sapidissima (American shad)
Pathway
asad04144
Endocytosis
asad04517
IgSF CAM signaling
asad04520
Adherens junction
asad04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
asad00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
121688002
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
121688002
09144 Cellular community - eukaryotes
04520 Adherens junction
121688002
04530 Tight junction
121688002
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
asad01009
]
121688002
Protein phosphatases and associated proteins [BR:
asad01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
121688002
BRITE hierarchy
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Paralog
GFIT
Motif
Pfam:
Par3_HAL_N_term
PDZ
PDZ_6
Motif
Other DBs
NCBI-GeneID:
121688002
NCBI-ProteinID:
XP_041923216
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Position
17:complement(18388819..18680643)
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AA seq
1422 aa
AA seq
DB search
MKVTVCFGRTRVVVPCGNGNIKVHSLIEQAVMRYKKAIAKDQAYWIQVHRLEHGDGGILD
LDDVLCDVADDKDRLVAVYEEQDPHHGGDGTSASSTGTQSPDLFAASGGGGGGAELNSST
MSAFQPYQAASEIEVTPSALRSNMPLHVRRSSDPALAALTEAQLIPEEPSRKNPTRWSTT
AGFLKPSAHNTISGTGTNSLERKGKGLNSYRSLPRDAAAWATQFQRENARSSLSANHPMV
DRWLERQEQEEEEEERRGEERNGRIEPVGRADSCVEHPPASLDDMLELIEVSNAGGPLGI
HVVPFSARDRRTLGLLVKRLESGGKAEQEGLFRENDCIVRINHGDLRNIRFEQAQNMFRQ
AMRTPLILFHVVPASKKAQYEQLSQSELGHQDSGHFSPDLSQNSGDRNNVAVGRNGGAGI
EFTPQRMSRSGPHPNVNPQASLGHPERADVYPPAPLSPVLNTPTKTATLGPSQTPRPVSA
TPSASYSKKIGRRLNVQLRKGPEGLGFSITSRDVPIGGSAPIYVKNILPRGAAIQDGRLK
AGDCLQEVNGVDLNGKTQEEVVALLRSTPMGGTVSLLIHRQEDAFLPREVKPEEDDLVLT
PDGTREFLTFDIPLNDSGSAGLGVSVKGNRSKENHADLGIFVKSIINGGAACKDGRLHVN
DQLIAVNGESLLGKTNQEAMETLRTSMSIESNKRGMIQLIVARRVTERDEELPSGASVPD
LSASPQDDHERRISHSMYPSLDDLDDDLSPRSSMMGRMMGNYQLSPTVNMPQDDTVIIED
DRPPVLPARLSDQSSSSSHDDMGFALEPPPPWVQDIPILNESSLSPDADPDLHFQREGFG
RQSMSEKRTKQFGDAAAQLEIIKTRKSKSMDLVADEINPNSCTERLEGSPTRDVGPSLGL
KKSSSLESLQTAVAEVTLNGDIPFHRPRPRIIRGRGCNESFRAAIDKSYDRPGMTTTASE
EYDEGMETLEEDTEESSRSGRDSVSTATDLTIAPGFGTVNPDSRQVNGSRPKEDKKKEKS
VKEKKKPDRDKEKDKNKAKKGMLKGLGDMFRFGKHRKDEKPGDKMERKGSSKSKMEDTQV
SEEETLRMRLEQERIQAKTRELRERQARERDYAEIQDINRTLSSDEEHPYAGIGSFDSSM
DSGHYQRPQSPHQDDSQPVEAVYAQINKPRNGRPQSVNSNRLAPSNHERIQRLRHEFQQA
KHEDDPDDRRRTYSFEQQPWANTGSYTQTGRHSVSVEMQMQRQRQDDSRDTFQQTQRQYN
SLPRHPRKNPSTVSQDSWDRVYPPGEGFQTAKENPRYSSYQGSRNGYLGSSGGGGFNARV
LLETQELLRQEQRRKEQEAKAKLESSTSASATPNSYGEPQGDASHPHPHPYPHPHSQSPS
PSPGPLTPTKGPYRQDVPPSPSQLARLNRLQSVQEKARPFYS
NT seq
4269 nt
NT seq
+upstream
nt +downstream
nt
atgaaagtcaccgtgtgttttggaaggaccagggtggtcgttccttgtggcaatgggaat
atcaaagtgcacagtctcatcgagcaagcagtaatgcgatataagaaagcaattgccaag
gaccaagcatactggattcaggtgcacaggctggaacatggagatggaggtattcttgat
ctggatgatgtgctgtgcgacgtagcggacgataaagaccggctggtggcggtgtacgag
gagcaggatcctcaccacggtggcgacggtacaagtgccagctccacaggcactcagagc
cctgacctgtttgcggccagcggtggaggtggcggcggagcggagctcaattctagcacc
atgtcggccttccagccctatcaggcagccagcgagatcgaggtcacgccctcggctctc
agaagcaacatgcccttgcacgtgcgccgtagcagtgaccccgcgctggctgccctcact
gaagcccagctgataccagaagagccgtccaggaagaacccgacgcgctggtccaccaca
gccggcttccttaagcccagtgcccacaacaccatcagtggaaccggcaccaacagcttg
gagagaaagggaaaagggttgaactcctaccggagccttcctcgcgatgctgctgcatgg
gccacccagttccagagggagaatgcccgctcatcgctcagtgccaaccacccaatggtc
gaccgctggctggagcgccaggaacaggaagaggaggaagaagagagaagaggggaggag
cggaatggcagaattgagccagttggacgagcagactcctgtgtggaacaccctcctgcc
tcgttagatgatatgctagagctgatagaggtgtctaatgccggaggaccgttgggaatc
cacgtagtgccattcagtgccagagaccgaaggactctgggcctgctcgtcaaacggctg
gagagtggagggaaggcggagcaggagggcctgttccgcgagaatgactgcatcgtgcgg
attaatcacggggatctgcgcaacatccgattcgaacaagcacagaacatgttcagacaa
gccatgcgcactcctcttatcctgttccacgtggtgcctgcctcaaagaaagcccagtat
gagcagctgtcccagagtgagctgggtcatcaggactccggccacttcagcccggacctc
tctcagaactctggggaccgcaacaacgttgcggtgggaagaaacggtggtgcgggcatt
gaattcaccccacaacggatgtcgaggagtggaccccaccccaacgtgaacccacaggcc
agtctaggccatccggagagggcagatgtctaccctccggcacctctcagccctgtgctg
aatactccaactaagacggccaccctcgggccgagccagaccccgagacctgtcagtgcc
actccctccgccagctactccaaaaagattgggcgcagactcaacgtgcagctcagaaaa
ggtcctgagggcctgggtttcagcatcacatcccgagatgtcccaattggtggctctgcc
cccatctatgttaagaacattctaccgcgtggggctgccattcaagatggccgcttgaag
gccggagactgcttacaggaggtgaatggggtggacctgaatgggaagactcaggaggaa
gttgttgctctgttgcgctcaaccccgatgggtggcacggtcagcctgctcattcaccgc
caagaggatgcatttctgccccgagaagtgaagccagaggaggatgacctagtgttgacc
ccagatggtacacgggagttcctgacgtttgacattcctctaaatgactcgggatctgca
gggttaggtgtcagtgtcaagggcaatcgttctaaagagaaccatgcagacctgggcatc
tttgtcaagtctataatcaacggtggagcagcttgcaaggatggacgcctgcatgtcaat
gaccagttgattgctgtcaatggagagtccttgctgggcaagaccaaccaggaagccatg
gaaacactacggacatccatgtccattgagagtaacaaacgtggaatgatccagctcatt
gtcgccaggagagtcactgaaagagacgaggagctgccatctggtgcctcagttccagac
ctgtcggcatcaccacaagacgaccacgagagacggatttctcattccatgtaccctagc
ctggatgacctggacgatgacctctctcccaggtccagcatgatgggcaggatgatgggt
aactaccagctatcccccactgtcaacatgccccaggatgatacagtaatcatagaagat
gataggccacctgtcctgcccgcccgcctgtctgaccaatcatcttccagctcccacgat
gatatgggtttcgctttggaaccaccaccaccctgggtgcaagacatcccaatactgaat
gaaagttctctcagtcctgacgcagaccctgacctccacttccagcgggagggttttggc
cgccagagcatgtctgagaagcgtaccaaacagtttggggatgctgctgcccaactagaa
atcatcaagactcgcaagtcgaagagtatggacctggtagctgacgagattaaccccaat
tcctgcactgagagactggaaggatccccaactcgagatgttggcccatctcttggtctg
aagaagtccagctcccttgaaagcctccagactgcagttgctgaggtcaccctcaatgga
gacatcccctttcacaggccacgcccacggataataagggggaggggctgtaacgagagc
ttccgtgccgccattgacaaatcatatgatcgtccaggcatgaccaccactgcttcagag
gaatatgacgaaggcatggaaaccttggaggaagacacagaggagagttcccgttctggc
cgggactctgtctccacggcaactgacctcaccattgcacctggctttggcacagttaac
ccagactctcggcaggtcaatggaagccgtccgaaagaagacaagaagaaagaaaaaagt
gttaaagagaagaagaagccagaccgagacaaggagaaggacaagaacaaagccaagaaa
gggatgctgaagggcttgggagatatgttcaggtttggcaagcacagaaaagatgagaag
cctggagacaagatggaacgcaaggggtctagtaagtccaagatggaggacacacaggtc
tcggaggaggagactctgcgaatgcggctagagcaggaaaggatccaagcgaaaaccagg
gagctacgtgagcgtcaggccagagaaagggactacgctgagatccaggacatcaaccga
accctaagttctgatgaggagcatccctatgcaggcattggctcctttgactcctccatg
gacagcggccactatcagcgtccccagagcccgcatcaggacgactcgcagccagtcgaa
gcagtctacgcccaaatcaacaagccccgcaatggccggcctcagtctgtcaacagcaac
cggctggcgcctagcaaccacgagcggatacagcggctgcgccacgagttccagcaggcc
aagcatgaggacgatccagatgaccgcaggcgcacgtacagcttcgagcagcagccctgg
gctaacacaggttcctacacgcagactgggcggcactcggtgtctgtggagatgcagatg
caaaggcagaggcaggacgacagtagagacaccttccagcaaacccaaagacagtacaac
tccctaccacggcatcctcgtaagaatcctagcaccgtctctcaggattcctgggatcgc
gtgtacccgccaggagaaggcttccagacggccaaggagaacccgcgctactccagctac
cagggctctcgcaacggctacctgggctcgtcggggggaggaggtttcaacgcgcgcgtg
cttctggagacccaggagctgctgcgccaggagcaacgccgcaaggagcaggaggccaag
gccaagctagagagcagcacgagcgccagcgccacccccaacagctacggagagccccag
ggggacgcctcgcacccccacccccacccctacccccacccccactcccagtccccctcc
ccctccccaggccccctcacccccaccaaagggccctaccggcaggacgtgccgccctcc
ccctctcagttggcccggctcaaccggctccagtctgtgcaggagaaagcgcggccattt
tactcctga
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