Alosa sapidissima (American shad): 121688539
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Entry
121688539 CDS
T11137
Symbol
pola1
Name
(RefSeq) DNA polymerase alpha catalytic subunit
KO
K02320
DNA polymerase alpha subunit A [EC:
2.7.7.7
]
Organism
asad Alosa sapidissima (American shad)
Pathway
asad03030
DNA replication
Brite
KEGG Orthology (KO) [BR:
asad00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
121688539 (pola1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
asad03032
]
121688539 (pola1)
Enzymes [BR:
asad01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
121688539 (pola1)
DNA replication proteins [BR:
asad03032
]
Eukaryotic type
DNA Replication Elongation Factors
DNA polymerase alpha / primase complex
121688539 (pola1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_B
zf-DNA_Pol
DNA_pol_B_exo1
DNA_pol_alpha_N
DUF1744
DNA_pol_B_2
Motif
Other DBs
NCBI-GeneID:
121688539
NCBI-ProteinID:
XP_041924136
LinkDB
All DBs
Position
17:complement(32257496..32370602)
Genome browser
AA seq
1480 aa
AA seq
DB search
MAPVSNTDKDMDSPTTDSGDGCGLAATRSRREKREKVGRKSALEQLKRAKKGEKVKYELE
EFENVYEEVDEAQYSRMVRERQDDDWIIDDDGMGYVEDGREIFDEELADDALNQNAKGKA
GGKAGDAKDKKNMKKVSLAKPNSIKSMFMNSNVKKPAEKDVDLSKDDLLGDLLQDLHSEK
PALLTPPPVVTLKKKKTMGSPMNPFSVRPQPPKEMLPAPGSKVKSSVSAAPSAPARKPQP
QAPKPAPLAKAIKVEDPDPEEEEEEPLQFDEVDFDEPMEVGDEDVAEAVVKTEAKAKPEV
KPAVKVEPKSELHDAMLISDVTGGWEKMEEDEGASEAPVEVQVDASQLPLVDGPDGDKVF
RFYWLDAFEDQYSQPGVVFLFGKVWIESARAHVSCCVAVKNIERTMYLLPREHKVNLATG
EETDQPVGLMDVYQEFSSLSEKFKIMKFKSKKVEKSYAFEIPDIPTQSEYLEVRYSAEMP
ALPSDLKGSTFSHVFGSNTASLEHFLLSRKIRGPCWLDIKTPQLTNQALSWCKVEAVALK
SELVCVVKDLSPPPLVVMSLSLKTVQNPKTHHNEIVSLAALVHHQFPLDKAPPRPPFQTH
FCVISKPNDCIFPYDFKEAVRKKNAKVEIAGTERALLGFFLAKMHKIDPDVLVGHDILGF
DLEVLLQRISFCKVPHWSKIGRLRRANMPKLGGRSGFAEKSATSGRLVCDVEISAKELIR
CKSYHLTELASQVLKMERAVIPQENIRNFYGDSPHLLYVLELTWMDAKLILQIMCELNVL
PLALQITNIAGNVMSRTLMGGRAERNEFLLLHAFHEKNYIVPDKQFFKKPQHDLAGDEDE
DGAGKGAPKKVRKKAAYAGGLVLDPKVGFYDKFILLLDFNSLYPSIIQEFNICFTTIQRV
ASAMRKKTQEEEDADEIPEIPDSDLEMGVLPKEIRKLVERRRQVKQLMKQPDLNPDLHMQ
YDIRQKALKLTANSMYGCLGFSYSRFYAKPLAALVTHKGREILMHTKDLVQRMNLEVIYG
DTDSIMINTNSTNLDEVYKLGNKVKSEVNKLYKLLEIDIDGVFKSLLLLKKKKYAALMVE
NHGDGRFTTKQELKGLDIVRRDWCGLAKECGNYVIGQILSDQSRDTIVENIQKHLIEVGE
KVASGDVPLNMFEIHKALTKDPQDYPDKKSLPHVHVALWINSQGGRKVKAGDTVSYVICQ
DGSNLGASQRAYALEQLQKQDGLTLDTQYYLAQQVHPVVGRICDPIEGIDGVLIATWLGL
DPGQFRAQQRQQREEETDGLLGAPAQLTDEERYRDCERFSFTCPQCGTENIYDNVFEGAG
TMIEPSLLQCCKVSCGGRPVDHHTQISNKLLLDIRRHIRKYYSGWLHCEDQACPHRSRRL
PIFFSRSGPVCPSCSKYTLRPEYSEKALYNQLSFYRFIFDWDYAFNKVLTSEDRAIAKGR
WALERQAYKKLKDVVDRALASSSYSEVNLAKLFQAFTALK
NT seq
4443 nt
NT seq
+upstream
nt +downstream
nt
atggctccggtttcaaataccgacaaagacatggacagtccaaccactgattctggggat
ggctgcggccttgctgctacacgctccaggagggagaagagggagaaagttgggcgcaaa
tcagccttggagcagctgaaaagggccaagaagggagagaaagtgaagtatgagctggag
gagtttgagaatgtgtatgaagaagtggatgaggctcagtattcgcgcatggtgcgagag
cgacaagacgatgactggatcattgacgatgacgggatgggctatgtagaagacggaaga
gagatctttgatgaagagctcgctgatgacgctctgaatcagaatgctaaaggaaaagca
gggggtaaagctggagatgccaaagacaaaaagaacatgaagaaagtatccctggccaaa
cccaacagcatcaagagcatgtttatgaacagcaacgtgaagaagccagctgagaaagat
gttgatctgtccaaagatgacttattgggtgaccttttgcaagacctgcattcagagaaa
ccagccctcctcacgcccccgcctgttgtcacactgaagaagaagaaaacaatggggtcc
cccatgaaccccttctccgttaggcctcaacccccaaaggagatgctgcctgctccaggg
tcaaaggtgaaatcatcagtctctgcggcaccatcagccccggcaagaaagcctcaaccc
caggcccccaaaccagcccctctggccaaagccattaaagtggaggatccagatccagag
gaagaagaggaagagccgctgcagtttgacgaggtggactttgatgagccgatggaggtg
ggtgacgaggatgtcgcagaagcagtagtgaagacggaggccaaagccaagcccgaggtc
aaacccgccgtgaaggtcgagcccaagagtgaactgcacgatgctatgctcatctcggac
gtaacgggaggctgggagaagatggaggaggacgagggggccagcgaggcccctgtggag
gtgcaggtggacgccagtcagctccccctggtggacggccccgacggggacaaggtgttc
cgcttctactggctggatgccttcgaggaccagtacagccaaccaggtgtggtgttcctg
ttcggcaaggtgtggatcgagtcagcccgagcccacgtgagctgctgtgtggcggtgaag
aacatagagaggaccatgtaccttctccccagagaacacaaggttaatttggccactggg
gaggagacagaccagccagtgggcctaatggatgtctatcaggagttcagcagtctctca
gagaagtttaagatcatgaagttcaagtccaagaaagtggagaagagctacgcctttgag
atcccagatattcccacgcaaagcgaatacctggaggtgaggtactcggctgagatgccc
gcattgccttctgacctgaagggctccacgttctcccacgtgtttggttccaacacggcc
agcctggagcacttcctcctcagcaggaagatccgtggaccctgctggcttgacatcaaa
accccacagctgaccaatcaggcgctgagctggtgtaaggtggaggctgtggctctgaag
agtgagctggtttgcgtggtgaaggacctgtcccctccccccctcgtcgtcatgtccctc
agtctgaaaacggtgcaaaaccccaagacccatcacaacgagattgtgtcgctggctgct
ctggtccatcaccagtttcccctggacaaggctccgccccggccgccgttccagacgcac
ttctgcgtgatcagcaaaccgaatgactgcatcttcccgtatgacttcaaagaggccgtg
aggaagaagaatgccaaagtggagattgcaggaacagagcgagcgttgctgggattcttc
ctggcaaagatgcacaagattgatcctgatgttttggtgggtcatgacatcttgggtttt
gacctggaagtactcctgcagaggatcagcttttgcaaggtacctcattggtcgaagatc
ggacgtctgcgtcgggccaacatgccgaaattggggggtcgtagtggctttgcagagaag
agcgccacgagtgggcgcttggtgtgtgacgtcgagatctcagccaaggagctgattcgc
tgtaagagctaccatctgacggaactggcgtcccaggtgttgaagatggaacgtgctgtg
attcctcaggagaacattcggaacttctacggtgactcccctcacctgctgtacgtgctg
gagctcacctggatggacgcgaagctcatcctgcagatcatgtgcgagctcaacgtcctg
ccactcgccctgcagatcaccaatatcgctggaaatgtcatgtctcgtaccctgatgggc
gggcgagcagagcgcaacgagttcctgctgctccacgccttccacgagaagaactacatc
gttccagacaagcagttcttcaagaagccccagcacgacctggctggggatgaagacgag
gatggagcaggtaaaggggctccaaagaaggtgaggaagaaggctgcatatgccggagga
ctggtgttggatcccaaagtgggtttctatgataagttcatcctgctgctggacttcaac
agtctgtacccctccatcatccaagagttcaacatctgcttcaccaccatccagagagtg
gcttctgccatgcgcaagaaaacacaagaggaggaggacgcagatgagattcctgagatt
ccggactctgacttggagatgggagtccttcccaaggagatccgtaagctggtggagcgc
cgtcggcaggtcaaacagctgatgaagcagccagacctcaaccctgaccttcacatgcag
tatgacatcagacagaaggctctgaagctgacggccaacagcatgtacggctgcctgggc
ttctcctacagtcgcttctatgccaaacctctggccgccctggtcacgcacaaaggcaga
gagattctgatgcacaccaaagacttggtgcagaggatgaacctggaggtcatttatgga
gacacggattccatcatgattaacaccaacagcaccaacctggacgaagtctacaaactt
ggcaacaaggtgaagagtgaggtgaacaagctgtacaagctgctggagattgatatcgac
ggcgtgttcaagtcgctgctgctgctgaagaagaagaagtacgcggcgctgatggtggag
aaccacggcgacggccgcttcaccaccaagcaggagctcaagggcctggacatcgtgcgc
agggactggtgcggcctcgccaaggagtgcggcaactacgtgattggtcagattctgtct
gaccagagccgagacaccatcgtggagaacatccagaagcacctgatcgaggtgggcgag
aaggtggccagtggcgatgtgcctctcaacatgttcgagattcacaaggctctgactaaa
gaccctcaggactaccccgataagaagagtcttccccatgtgcacgtggctctgtggatc
aactctcaggggggcaggaaggtcaaagctggggacacggtctcctacgtcatctgtcag
gacggttctaacctgggggcgagccagcgagcctacgccctggagcagctccagaagcag
gacggcctcaccctggacacgcagtactacctggcccagcaggtgcatcctgtggtgggc
cgcatctgcgaccccatcgagggcatcgacggtgtgctcatcgctacctggctagggctg
gaccccggtcagttccgggctcagcagcggcagcaacgggaggaggagacggacggcctg
ttgggggcgccagcgcagctgacggacgaggagcgttaccgtgactgcgagaggttctcc
ttcacctgcccccagtgtggcaccgagaacatctacgacaacgtcttcgaaggagcgggc
acgatgattgagccgagtctgctgcaatgctgcaaggtgtcctgtggggggcgccctgtg
gaccaccacacccagatcagcaacaagctgctgctggacatccgccgccacatcaggaaa
tactacagcggctggctccattgtgaggaccaggcttgtccccatcgctcgcgtcggctg
cccatcttcttctcccgcagcggcccagtgtgccccagctgctccaagtacacactcagg
ccagagtattctgagaaggccctgtacaaccagctgagcttctacaggttcatctttgat
tgggattacgccttcaacaaggtcctcacatcagaagacagagcgatagcgaagggccgc
tgggcgctggagcgtcaggcgtataagaagctaaaggacgtggtggaccgcgccctcgcc
tccagcagctactcggaggtcaacctggccaaactcttccaggccttcaccgctctcaag
tag
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integrated database retrieval system
