Alosa sapidissima (American shad): 121688568
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Entry
121688568 CDS
T11137
Symbol
smarcd3b
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 3b isoform X1
KO
K11650
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D
Organism
asad Alosa sapidissima (American shad)
Pathway
asad03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
asad00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
121688568 (smarcd3b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
asad03021
]
121688568 (smarcd3b)
03036 Chromosome and associated proteins [BR:
asad03036
]
121688568 (smarcd3b)
Transcription machinery [BR:
asad03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
121688568 (smarcd3b)
Chromosome and associated proteins [BR:
asad03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
121688568 (smarcd3b)
PBAF complex
121688568 (smarcd3b)
GBAF(ncBAF) complex
121688568 (smarcd3b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIB
NPC1_MLD
Motif
Other DBs
NCBI-GeneID:
121688568
NCBI-ProteinID:
XP_041924167
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All DBs
Position
17:complement(12525342..12566891)
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AA seq
516 aa
AA seq
DB search
MATEESAGGARKATKSKLFEFLVHGVRPGMPSGARMPHQGAPMGPPGPPYGGSPAVRPGL
PSPGMEPSRKRPAASQQVQQQPAVQNRTRKKPVGFPGANEMPARQMDMRDAQSDPTLGSN
AKRRKMADKILPQRIRELVPESQAYMDLLAFERKLDQTIMRKRVDIQEALKRPMKQKRKL
RLYISNTFNPAKPDAEDSDGSIASWELRVEGKLLDDPGKQKRKFSSFFKSLVIELDKDLY
GPDNHLVELMGSHAQLRMWHRTPTTQETDGFQVKRPGDVSVRCTLLLMLDYQPPQFKLDP
RLARLLGIHTQTRSCIIQALWQYVKTNKLQDSHDKEYINCDKYFQQIFDCPRLKFSEIPQ
RLTNLLLPPDPIVINHVISVDPNDQKKTACYDIDVEVEDPLKAQMSSFLLSTANQQEIAS
LDNKIHETIESINQLKIQRDFMLSFSRDPKGYIQDWLKSQSRDLKLMTDVVGNPEEERRA
EFYQEPWTQEAVSRYFYSKIQQRRQELEQALALRNT
NT seq
1551 nt
NT seq
+upstream
nt +downstream
nt
atggccactgaggagtcggctggaggagctcgcaaagccaccaagagcaaactgtttgag
ttcctcgtccatggagtgcgtcctggcatgccatctggagcacggatgccccaccagggg
gcgccgatgggacctccgggccctccatacgggggcagccccgccgtgcgccccggactg
cccagcccggggatggagcccagccgaaagcggcccgctgcctctcagcaggtccagcag
cagcctgccgtgcagaacaggaccaggaagaagccagtgggattccccggagccaatgag
atgccagcgaggcagatggacatgagagatgcccaatcagatcccacgctcggatcaaac
gccaagaggaggaaaatggctgacaagatccttccacaaaggatccgggagctggtgcct
gagtcccaggcttatatggacctgctggcctttgaacgcaaactggatcaaaccatcatg
cgcaaaagggtggatattcaggaggccctgaagagacccatgaagcaaaagagaaagctg
cgactttacatctcaaacacctttaaccccgccaagcctgatgccgaggattccgacggg
agcattgcatcatgggagctgagggtggagggcaagctgctagatgaccctgggaaacag
aagaggaagttctcatcgttctttaaaagcctggtcattgagctggacaaagacctgtat
ggcccagacaaccacctggtggagctaatgggcagccatgcacagttgagaatgtggcat
cgcactcccaccacccaggagacggacggcttccaggtgaagaggccgggggacgtgagc
gtacgctgcaccctgctgctgatgctggactaccagcctccccagtttaaactagacccg
cggctggctcgtctgctgggcatccacacgcagacccggtcctgcatcatccaggccctc
tggcagtatgtgaagaccaacaagctccaggactcccacgataaggagtacatcaactgt
gacaagtacttccagcagatatttgactgccctcggctcaagttctcagagattcctcag
cgcctcaccaatctgctgctgccccctgaccccatagtcatcaaccacgtcatcagtgtg
gaccctaatgaccagaagaagacggcgtgttacgatattgatgttgaggtggaggacccc
ctgaaagctcagatgagcagcttcctcctctccacagctaatcagcaggagatcgcctcc
ctggacaacaagatccatgagaccattgagtccatcaaccagctgaagatccagagggac
ttcatgctcagtttctccagggaccccaaaggctacatccaggactggctcaagtcccag
agcagagaccttaagctgatgactgatgttgtgggtaacccggaagaggagaggagggca
gagttctaccaggagccctggacacaggaggctgttagccgctatttctactcaaagatt
caacagcggagacaggagctggaacaggcactggccttgaggaacacctaa
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