Alosa sapidissima (American shad): 121688651
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Entry
121688651 CDS
T11137
Symbol
trpa1b
Name
(RefSeq) transient receptor potential cation channel subfamily A member 1b isoform X1
KO
K04984
transient receptor potential cation channel subfamily A member 1
Organism
asad Alosa sapidissima (American shad)
Brite
KEGG Orthology (KO) [BR:
asad00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
asad04040
]
121688651 (trpa1b)
Ion channels [BR:
asad04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
121688651 (trpa1b)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ank_2
Ank
Ank_3
Ank_4
Ank_5
Ion_trans
Motif
Other DBs
NCBI-GeneID:
121688651
NCBI-ProteinID:
XP_041924308
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All DBs
Position
17:complement(12841693..12876720)
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AA seq
1104 aa
AA seq
DB search
MSVARENSFYKCVIDTDNATLDWGKVFEWAHEGNTACLEHLIRKHPKCLAAKDDAGATPL
HHATSGGSLEVIRLLVSTSGPEGLNMCDGQGNTPLHWAVEKHVGDSCALLLNLGANPNVL
NAALMSPLHLAISKGHNDMVELLLSFSVTDVNLEGDLGNTPVMLACSNNNCQALNILFKY
GAKLCSQNKLGHYAIHAVTFNGSKEAMEVIIKKGEEFGHSAETHLNYLDKSQCSPLHLAV
RGGNIEVIKLCIEKGARINQQQADKSTALHLACTQGATEAVKLMLASCLHGDDIINMRDG
ANQTPLHRATIFDHVELAEYLISKGADIDCIDCKGLSPLLLATSCGAWRAVAFLLSKGAN
MKIKDEEGRNFLHLATFQAKGLKCIPEHILQTATVRDLLCDEDNEGCTPLHYACRLGIHD
SVKNILVLQVCPKRKSKNKKSAFHFAAEYGRINTCHRLLERITDSQMLNEGDEHGLTPLH
LACRGGHTKVVELLLRKGALFQSDYKGMTCLHHAAAEGYTQTMTILLAANVKLLDKADED
GNTALHLAAREGHVAAVKLLMERGASIVLNNSDASFFHEAVHHGKKEVADAIIDNERLNE
AIKTFKHSSDHRCVAIDLIELIPESFKHLLDLCIRESDHDANSPDYHIQYNFQWLQAPVQ
LKKHAKTDKSLRVQPLACMNAMVQYHRVELLTHPVSNKYLEMKWLAYGSKVHLLNLVIYL
LGLLPLTFLIINLRPTQTMGQNGTSVMVGPIPIRQSSYLITSSTIMVIVISCYAILKQIT
QMSQQKMKYLKDPSNPAEWATSIASLMFTIPIMFGVEDNWVWEAGAVAILLAWVNFLLYL
QRFEHFGIYVVMFGEIIKTLFSVIVLVIFLVLAFGLSFYALMLHQSEFHWLGLSLAQTFV
MMVGELNYQSNFFAAFEGNRLAFPQITYVVFVFFILLMPILLMNLMIGLAVGDIAEVQRN
ACLKRIAMQIDLHTNLEEKLPYWILKRVDKSSITVYPNKPCRNRSMFKFWHSRDVSAVQS
RLNTGGQELTPVETELRKQKLRLREIYSVLEKQHSMVKLILQKMEITSEADDYDGPDDAH
SGRRGRAQRSRWIPLVKSLKSSHH
NT seq
3315 nt
NT seq
+upstream
nt +downstream
nt
atgtcagtcgccagggagaacagtttctacaaatgtgtgattgacacagacaatgcaacc
ctggattggggaaaggtcttcgaatgggcccatgaggggaacacggcgtgcctggaacac
ctcatcaggaaacacccaaagtgcctggcggccaaggatgacgctggcgccaccccactc
caccacgccacctctggggggagcctggaggttatccggctgttggtcagcaccagcgga
ccggagggattgaacatgtgtgatggtcagggcaatacgccgctgcactgggccgtggag
aagcatgttggggacagctgtgcactcctgctgaacctgggtgccaaccccaacgtcctc
aatgccgccctcatgtctcctctacacctggccatcagcaagggacacaacgacatggtg
gagctcctgttgtccttcagtgtcacagatgtaaacctggagggagacctggggaacaca
cctgtcatgctggcctgctccaacaacaactgccaggccctaaacatactgtttaagtat
ggtgcaaaattgtgctcccagaataagctgggccactatgctatccatgcagtgactttt
aatgggtccaaggaagccatggaagtgattataaagaaaggggaagagtttggacacagc
gctgagactcacctgaactacctggacaaatcccaatgcagtcctctgcatctggctgtg
cgtggaggcaacattgaagtaatcaaactctgcattgagaaaggggcaagaattaatcag
caacaggctgacaaatccacggctctgcacctggcctgcactcagggcgccactgaggca
gtgaagctcatgctcgcctcctgcctccatggcgacgacatcatcaacatgagggacgga
gccaaccagacccccctgcacagggcaacaatatttgatcatgtggaattggcagaatat
cttatttcaaagggggcagacattgactgcattgactgcaagggcctgtctccgctgttg
ctagccacaagctgtggagcgtggagggcagtagcctttctactgtccaaaggagcaaat
atgaaaatcaaggacgaagagggacgcaacttcctgcaccttgccactttccaggccaaa
ggactgaaatgcatacctgagcacatcttacagactgccaccgtgagggacctcctgtgt
gatgaggataatgaggggtgcactcccctgcactacgcctgcagactggggatccacgac
agcgttaagaacattctggtcctgcaagtgtgccccaaacgcaagtccaaaaacaagaaa
tcagcctttcacttcgcagctgagtatgggcgtataaacacatgccatagactcctggag
agaatcacagactcacagatgctgaacgagggtgatgaacatggcctcacgccactccac
ctggcctgccgcggcgggcacaccaaagtggtggaactgctgctcaggaaaggagctttg
tttcaaagtgattacaaaggcatgacatgtttacatcacgccgctgccgagggctacaca
cagaccatgacaatcctcctggcagccaacgtcaaactactggacaaggccgatgaggat
gggaacacagctctgcacctggctgccagagagggacatgttgctgcagtgaaacttctg
atggagagaggtgcttccattgttctgaacaacagcgatgcctctttcttccatgaagca
gtgcatcatgggaaaaaggaagtggcagatgccatcattgataatgaaaggttaaacgaa
gctattaaaacatttaagcatagttctgaccatcgctgtgtggccattgacttaattgag
ttaatccccgaatccttcaagcacttactggacctgtgcatcagagagtcagaccatgat
gccaacagccctgactaccatatccagtataatttccagtggctccaagcaccagttcag
ttgaagaaacatgccaagactgacaagagtctgagagtgcaacctttggcatgtatgaat
gccatggtgcagtaccaccgtgttgagcttcttacccacccagtgagcaataagtacctt
gaaatgaaatggctggcgtacgggagtaaagttcacctgctcaatctggtcatatacctg
cttggcttgctgcccctcaccttcctcatcatcaacctgaggcctacgcaaaccatgggc
cagaacggaacatctgtcatggtcggccccatcccaatccgccagagcagttatctaatc
acctcaagcacgatcatggtcattgtcataagctgctatgccatattaaagcagatcact
cagatgtcacagcagaaaatgaagtacttgaaagacccctcgaacccagcagaatgggcg
acctctatcgccagtttgatgttcacgattccaatcatgtttggtgtggaggacaactgg
gtctgggaggccggagctgtggccatcctgttggcttgggtcaacttcctgctttacctg
cagaggtttgagcactttggaatttatgttgtgatgtttggtgagatcatcaaaacactg
ttcagtgtcattgtgctcgtcatcttcctggtcctggcatttggcttgtccttctatgct
ctcatgctccatcagagtgagtttcactggctaggcctgtctctggctcagacctttgtg
atgatggtgggggagctcaactaccagagcaacttcttcgcggccttcgagggcaatcgg
ttggccttcccccagatcacctacgtggtcttcgtctttttcattctcctcatgcccatc
ctgctcatgaacctcatgattggtttggcagtcggagacattgctgaagtgcagaggaac
gcctgtctgaagcggatcgccatgcagattgatcttcacacaaacctggaggagaagctt
ccatattggatccttaagcgagtggacaagtcctccatcactgtttatcctaacaagccc
tgcagaaataggagcatgttcaagttttggcactcaagggacgtgtcggcggtacagagc
cgtctgaacaccggtggccaggagctcacgccggtggagacggagctgaggaagcagaag
ctcagattaagggaaatctacagcgtcctggagaagcagcacagcatggtgaagctgatc
ctgcagaagatggagatcacgtcggaggcggatgactacgacggaccggacgatgcccac
agcggccggaggggccgcgctcaaaggtccagatggatccccctcgtcaaatctcttaag
tcaagtcaccactga
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