Alosa sapidissima (American shad): 121688811
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Entry
121688811 CDS
T11137
Symbol
trpc1
Name
(RefSeq) short transient receptor potential channel 1
KO
K04964
transient receptor potential cation channel subfamily C member 1
Organism
asad Alosa sapidissima (American shad)
Brite
KEGG Orthology (KO) [BR:
asad00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
asad04040
]
121688811 (trpc1)
Ion channels [BR:
asad04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
121688811 (trpc1)
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GFIT
Motif
Pfam:
TRP_2
Ion_trans
Ank_2
Ank_4
MTR4-like_stalk
LHD_TRPY1
TALPID3
Motif
Other DBs
NCBI-GeneID:
121688811
NCBI-ProteinID:
XP_041924606
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Position
17:complement(28821137..28844153)
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AA seq
806 aa
AA seq
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MVKWSLLPTSGIHISVLPYSVSVVMAALYQGTDVSSPDKYLALKDVREVKEETTLDEKLF
LLACEKGDYYMVKKLLEEKRHGELNINCVDVLGRDAVTISIENENLDILQLLLEHGCQAT
DALLVAIDSEVVGAVDILLNHRPRRASKPSMAKLMQRIQNPEYSTTMDVAPVILAAHRNN
YEILTMLLKQDISLPRPHAVGCECTLCNAKNKKDSLRHSRFRLDIYRCLASPSLIMLTEE
DPILRAFELSADLRELSLVEVEFRNDYDELAKQCKMFAKDLLAQARNSRELEVILNHTSN
EDHVNKRGLLEERMNLSRLKLAIKYNQKEFVAQSNCQQFLNTVWFGEMASYRRKHTGLKI
ALVLSVTLLWPLLSACYLLGPRSRVGQVIHTPFVKFIIHSASYFTFLLLLNLYSLVYNED
TKNTMGPALEMIDYLLILWIVGMVWSDVKRLWYEGLEDFLEESRNQLSFVMNSLYLATFA
LKVVAHSKFKDKAEERKNWDAFHPILVAEGLFAVANVLSYLRLFFMYTTSSILGPLQISM
GQMLQEFGKFLGLFLLVLISFTIGLTQLYGKDQKDPAKNQTEDCEGIFCPRQSNDAFHTF
MGTCYALFWYMFSLAHVVLFVTRISYTEELRSFVGALIVGTYNIVVVIVLTKLLVAMLHK
SFRQIANHEDKEWKFARAKLWLSYFDDKCTLPPPFNILPSPKTLCYLVTSLSKWVCSHTS
TGRVKRQNSLKEWRNLKQKRDENYQKIMCCLVHRYLTSTRQKMQSTDQATVENLNDLRQD
LSKFRNEMRDLLGFRTSKYAMFYPRS
NT seq
2421 nt
NT seq
+upstream
nt +downstream
nt
atggttaaatggtcgcttcttcctactagtgggatacacatcagtgttttgccctactcg
gtctccgtcgtaatggctgctctctatcagggcacggatgtatcctcaccagataagtac
ctagccttgaaagacgtgagggaggtaaaggaagaaacgacgctggacgagaagcttttc
ttactggcctgcgagaagggtgactactacatggtgaagaagcttcttgaagagaagaga
catggtgagctgaacatcaactgtgtggatgtgttgggcagagatgctgtcactatttcc
attgagaatgagaacctggacatcctccagttgctgttggagcatggctgccaggcaacg
gatgccttgctggtggccatcgactcagaggtggttggagcggtggacattctcctcaac
caccgacccagaagggcctcaaagccttccatggccaaactgatgcagcgcatccagaat
ccagaatattccaccaccatggatgtggcgccggtgatcctggctgcccacaggaacaac
tatgagatactgactatgctgctgaagcaggacatctctctgccccgaccacacgctgtg
ggctgcgagtgcacgctctgcaacgccaaaaacaagaaggacagcctgcgccactccagg
ttccgtctggacatctaccggtgcctggccagcccgtctctgatcatgctgaccgaggag
gaccccatcctacgggcctttgagctcagtgctgacctgcgcgagctcagcttggtggaa
gtggagttcaggaacgattatgacgaactggccaagcagtgcaagatgttcgccaaggac
ctgctggcacaggccaggaactcccgagagctggaggtcatcctgaaccacacgtccaac
gaggaccatgtgaacaagcggggcctgctagaggagcgcatgaacctcagccgcctcaag
ctggccatcaagtacaaccagaaggagtttgtggcacagtccaactgccagcagttcctc
aacacggtgtggttcggcgagatggccagctaccggcgcaagcacacgggcctcaagata
gcgctggtgctgagcgtgacgctgctctggccgctgctgtccgcgtgctacctgctgggg
ccgcgctcgcgcgtgggacaggtcatccacacgcccttcgtcaagttcatcatccacagc
gcctcctacttcactttcctgctgctgctcaacctctactcgctggtgtacaatgaggac
accaagaacaccatgggccccgcgctggagatgattgactacctgctcatcctgtggatc
gtgggcatggtgtggtcggacgttaaacgcctctggtacgaaggcctggaggactttcta
gaggagtcacgcaaccagctgagctttgtcatgaactccctctacctggccacctttgcc
ctgaaagtggtggctcacagcaagtttaaggataaggcagaggagagaaaaaactgggat
gccttccaccccatcctggtggccgagggcctgtttgctgtggccaacgtgctcagctac
ctccgcctcttcttcatgtacaccaccagctccatcctggggccgctgcagatctccatg
ggtcagatgttgcaggagtttggcaagttcctgggcctgttcttgctggttctcatctcc
ttcaccattggtctcactcagctgtatgggaaagaccagaaggaccccgccaagaaccag
acagaggactgtgagggcatcttctgcccacgacagagcaacgacgcgttccacacgttc
atgggcacatgctatgccctcttctggtacatgttctcgctggcccatgtggtcctgttt
gtcacgcggatcagctacacggaggagctgcgctcgttcgtaggcgccctcatcgtgggc
acctacaacatcgtggtggtcatcgtcctcaccaagctcctggtggccatgctgcacaaa
agcttcaggcagattgcgaaccatgaggacaaagagtggaagtttgctcgtgccaagctg
tggctcagttactttgatgacaagtgcaccctgcccccgcccttcaacatcctgccctcc
ccgaagaccctgtgctacctggtgaccagcctgagcaagtgggtctgctcacacacctcc
acaggcagagtgaaacgacagaacagccttaaggagtggaggaacctcaagcagaagagg
gatgagaactaccagaagatcatgtgctgcctggtacaccgctacctgacctccactcgc
cagaagatgcagagcaccgaccaggcgaccgtggagaaccttaacgacttgcgccaggac
ctgtccaagttccgcaacgagatgagggacctcctgggcttccgcacctccaaatatgcc
atgttctatcccagaagctaa
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