Alosa sapidissima (American shad): 121688864
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Entry
121688864 CDS
T11137
Symbol
tmtopsb
Name
(RefSeq) teleost multiple tissue opsin b
KO
K04256
c-opsin
Organism
asad Alosa sapidissima (American shad)
Brite
KEGG Orthology (KO) [BR:
asad00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
asad01009
]
121688864 (tmtopsb)
09183 Protein families: signaling and cellular processes
04030 G protein-coupled receptors [BR:
asad04030
]
121688864 (tmtopsb)
Protein phosphatases and associated proteins [BR:
asad01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
121688864 (tmtopsb)
G protein-coupled receptors [BR:
asad04030
]
Rhodopsin family
Vision
Opsin
121688864 (tmtopsb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
7tm_1
7TM_GPCR_Srw
7TM_GPCR_Srsx
7TM_GPCR_Srx
V-ATPase_su_f
UL41A
Motif
Other DBs
NCBI-GeneID:
121688864
NCBI-ProteinID:
XP_041924718
LinkDB
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Position
17:complement(14808106..14843030)
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AA seq
409 aa
AA seq
DB search
MIVSNVSLSCARSGGAWCANTGDGHLEGTSSDHTLSATGHLVVAVCLGFIGTFGFLNNLL
VLILFCRYKMLRSPINCLLVSISFSDLLVCVLGTPFSFAASTQGRWLIGPAGCVWYGFVN
SCLGIVSLISLAVLSYERYCTMMGATQADATNYKKVAAGIAFAWGYSLAWSVPPLFGWSR
YGPEGPGTTCSVNWTAKTANNVSYIVCLFFFCLILPFAVIVYSYGKLLQAITQVSRINTA
VSRKREQRVLLMVITMVVAYLLCWLPYGVMALVATFGGPGLVTPEASIIPSILAKFSTVI
NPIIYIFMNNQFYRCFQAMLKCTAPERGSSVKASSRATKTLRMVRRATNGHNVNITFGVP
SAGFNTTYAPESNRQSLEVKDTASTPPALVPPAPVPVKPTLSLVAHYNG
NT seq
1230 nt
NT seq
+upstream
nt +downstream
nt
atgatcgtatccaacgtgagcctaagttgcgcgaggtctggtggcgcgtggtgtgccaac
accggtgacggccacttggaagggacttcttcagaccacactctaagcgcaactggacac
ctggttgtcgccgtgtgtctcggttttatcgggacattcggtttcctcaataacttactc
gtcctcatccttttctgtcgctacaagatgctgcgctcgcccattaactgcctgctggtg
agcatctctttcagtgatctgctggtgtgtgtcctgggaactccgtttagctttgcagcg
agcacgcaaggacgctggcttatcggacccgcaggatgtgtgtggtacggtttcgtgaat
tcttgccttggcatcgtgtccctcatctcactggcggtgctctcctatgagcgctactgc
accatgatgggcgccacccaggccgatgccaccaactacaagaaggtggcagcgggcatc
gccttcgcctggggctactcgttggcatggtcggtgccaccgctgtttggttggagccgc
tacggccccgaggggcccggcaccacctgctctgtcaactggacggccaagacggccaac
aacgtgtcctacattgtgtgtctgttcttcttctgtctcatcctcccgtttgcggtcatt
gtctacagctatggtaagctcctgcaggccatcacacaggtgagccgcatcaacacggct
gtgagccgtaagcgggagcagcgggtgctgctgatggtcatcaccatggtggtggcctac
ctactgtgctggctgccctatggagtcatggccctagtggccacgttcggggggccaggc
ctggtgaccccagaggccagcatcatcccctccatcctggccaagttcagcacagtcatc
aaccccatcatctacatcttcatgaacaatcagttctacaggtgtttccaggccatgctg
aagtgcaccgccccagagcgtggctccagcgtcaaggcctcatcgcgtgccaccaagacc
ctgcgcatggtgcgccgtgccaccaacggccacaacgtcaacatcaccttcggcgtgccg
tccgccggcttcaacaccacctacgcccctgagagcaacagacagtcgttggaggtgaag
gacaccgcctccactcccccagcactggttccccctgcgcccgtgccagtcaagcccact
ctctctctagtagcccactacaatggctga
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