Alosa sapidissima (American shad): 121688917
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Entry
121688917 CDS
T11137
Symbol
pks1
Name
(RefSeq) phthioceranic/hydroxyphthioceranic acid synthase
Organism
asad Alosa sapidissima (American shad)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ketoacyl-synt
Acyl_transf_1
KR
Ketoacyl-synt_C
PS-DH
KAsynt_C_assoc
PKS_DH_N
adh_short
CurL-like_PKS_C
PP-binding
adh_short_C2
Thiolase_N
RhiE-like_linker
ADH_N
DUF7080
AA_synth
ACP_syn_III
Motif
Other DBs
NCBI-GeneID:
121688917
NCBI-ProteinID:
XP_041924765
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All DBs
Position
17:11074687..11081858
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AA seq
2084 aa
AA seq
DB search
MNIMDEDIAVVGIGCNFPGGEGLDNFWRVLVEGKNCSVEIPGERFNCSSWYDPDVSRPGK
TQTTKAALIDGFNELDHKFFGITEAEADFMDPQQKLLLQCSYRALEDAGIPMEKISGSRT
GVYIGLMNRDFETLLNNSPSTITHYNGTGTSMSVAANRISYTFNLTGPSFAIDSACSSSL
VALHSACQAIRQGDCEMALCGGVSCILEPRVFVALSKAKMISPDGTSKPFSSRADGYGRG
EGCGVVLLKPLKKALESHHHIWGIISKTSVNQDGRTVTPITKPSMVQQKELLSRIYSTER
DLTSVQYIEAHGTGTPVGDPIEAESISNVIAQARPQGSETIVGSVKGNIGHTESAAGVAG
LIKVLLMMKHQTIVPSLFYSEQSSSIDAKALNIKIPTKAEKWQQTNPDGRVAGINNFGFG
GTNAHAVIREHIDTPNSVPVRSEKRKLFILSAMTEKSLKMCISDTHRRLCTDEPVDLQSI
AYTSACRRSHLKQKYRKAFLSSSVAELQNQLKMALDKKISPSKPGLKLVFVFCGNGVTYR
GMCKQLLKEEPVFRAKVREVENLFQNHRSMCISQKIVSDYDNDDNSKPEVVQPLLFTIQV
ALANLLKHWGLRPDAVLGHSIGEVAAAHCSGLLSLADAVKVIYHRSTLQGIVTGGKMLVV
RNVAVADILEILSFYTGKVCLAALNSPVSCVLSGHEDAIDSLHQKLKTLVMTKNLFLHVL
DVPAAYHSHMMDPILSQIKERIGVLQANEKECELYSTVTGKPMSAGDFITGEYWAQNIRE
PVAFQKAINSAAKDKTNVVFIEISPRKALQRNIMEVLGNDITVMSSVQPDREHETLVSTM
ARLFELGFQIDWDNVYRGLESQPMSLPRYQFDCLKKEVYFETVRHGHAILPYPVHPLLSQ
MKDNNKQYACNLSSDVVPYFWEHKNNGVVIAPGSLYVELASEAAMQFIKPKKPLCSLKLS
VTFQSLFVLSKDPNQLRVLLEPSEGKTTFEIWSSSTMHASGTIIYGKGPAVIEEEVINCD
IVSKRCPIIITKEEVYSHLSLAGFEYGPTFRQLGEVCYGREFREALTSITVPDELLSQLY
EYRLHPVVLDWFLQMASVVVQDGTCVRPCFPSAIKSVVISRPLQRVMTMYLRVTRETNEF
YEVCGCFIDLSGRVLVELKCLRITFVQGSPQVVEFFHNEYRALTDGMNTVNRPKALVFED
TLGVAKALKPYLNPQSTFVSLSKSASSVPAWLTQCLETKAGVEFTEVLFMWGIQNLSQMK
IETILDSLVKCCELYRQIVLALRKYSTSYVIRVITYRSSGLIVDHVSPGFVLSGMTRALA
AEMSGFSFQLIDLASVSNEDIQELAHIISCSQSNQYPEILISKGHTHLATITRSPYHDSR
HSETCIHSLTSQRFTLQTTDPYMMAKLSAVTVSFDETPILDKTVEVKLDKICVHSSDFFP
VSVSDFQFGQTLYWSKHSTQNHKLLALDFSGTVTDVGKGVSKLKVGDHIASCYPVVASSK
VILPEVVCYNTAKLPFLRDVPCVSYLVLAREIFDHILPKDTKKLPVTILSCVPRTLAKLL
VEIGKTKGWSLNIQTHINDQNADYAVILLLPPYDHSMLVSASGISSVKHIVVVCKEELTS
HSHLIQQKNQNVSVHVLKTSSVLQKANLQRQGEHLDHWLHGVTCGKICMPIQENTVQREV
FSEMITSSTQNHSYFNVENISLIVCTKTGSLHTETNVPLLPQAKELFQKNSVYIVSGGLS
GLGLETLKFIAHRGGGYIVSLSRSLPSAEIQHKVSALQRQYGALVMTLKCDVSSVTDVVR
AFTAIGQRFPSCPIRGVFHSAAVLHDGLIETLDSSHFRKVLRPKVSGALNLHYATLHSKL
DYFVCYSSISSFLGNASQTNYAAANSFLDTFCHYRHNLGLVGQSINWGPLNLGLLLNKVN
FQRFLEAKGLTVMEISEVHESLERCLLTNNTQQVVCKFNFRNLQNHVLSQNASLRVRLSP
LVQQELKGEGTEPMVQSVNSVEDYVKRLLCDLSNADIDELRESSTLTSLGIDSMSAMTMQ
NCIFQDCGVNVPLVKILDPNSTMSSLVLILKQSNDVDIEIQSVG
NT seq
6255 nt
NT seq
+upstream
nt +downstream
nt
atgaacatcatggatgaggacattgcagtggttgggattggatgcaatttcccaggaggt
gagggtcttgacaacttctggcgggttctagtcgagggaaagaactgttctgtggagatt
ccaggtgagcgatttaactgctcgtcctggtatgatcctgacgtcagcagacctggaaag
acacagactaccaaggctgctcttatagatggatttaatgagttggaccacaagttcttt
ggcatcacggaggcagaagcagactttatggacccccagcaaaagctgctattacagtgc
tcctacagagccctagaggatgctgggatacccatggagaagatcagcgggagcaggaca
ggagtttacataggcctcatgaacagggactttgagactctccttaacaatagcccgagc
acaataacccactataatggcactgggacatctatgagtgtggctgccaacaggatctcc
tacacctttaatcttactgggccttcatttgctattgatagcgcttgttcctcatcttta
gtagcccttcactctgcctgccaggccatcagacaaggtgattgtgagatggctctttgt
ggaggtgtgagctgcattcttgaaccaagagtctttgtggctcttagcaaagccaagatg
atctcacctgatggcaccagcaaacctttctccagcagagcagatggctatggcagaggg
gaaggctgtggagttgtcctgctgaaacctttgaagaaggctcttgaaagccaccatcat
atatggggcataatcagcaaaacatcagtaaaccaagatggccgcaccgtcaccccaatc
accaagccgtcgatggttcagcagaaggagcttctcagcagaatctactctacagagaga
gacctgaccagtgtccagtacatagaggctcatgggactggaaccccagtaggagacccc
atagaggcagagagcatctctaatgtcatcgcccaagctaggcctcaaggatcagagaca
atcgttggctctgtgaaaggtaacatagggcacactgaatcagccgctggtgtagcagga
ctcatcaaggttcttctaatgatgaaacaccaaaccattgtcccctcattgttttactca
gagcaaagttcaagcattgatgcaaaagctttaaatataaagattcctaccaaagcagag
aaatggcagcagacaaatcctgatggtagagtggctggcatcaataactttggctttggg
ggcaccaatgctcacgctgtcataagggaacacatagacacacctaattcagttcctgtc
aggtctgagaaaaggaaattgttcatactttcagcaatgacagagaagtccctcaagatg
tgtatttccgacactcaccgaaggctatgcacagatgaaccagtagatctccaatctata
gcttacacatcagcatgtaggagaagccacttaaagcaaaaatacaggaaagcatttctg
tcatcttcggtggcagaattacaaaatcagctaaagatggctcttgacaaaaagatctcc
ccatccaagccaggcttgaagttggtgtttgtgttctgtggcaatggagtcacttataga
ggtatgtgtaaacagctgctcaaagaagagcctgtatttagagcaaaagtaagggaagtg
gaaaacctcttccagaatcataggagcatgtgcatttcccagaagatagtgagtgattat
gacaatgatgacaattccaaaccagaggtcgttcagcccttgctgttcaccattcaggtg
gcacttgcaaaccttctgaaacattggggcctcagaccagatgctgttctggggcattct
attggagaagttgctgctgcacactgttctgggctgttatctctcgcagacgcagttaag
gtgatctaccaccgaagtactctgcagggaattgtcactggggggaaaatgcttgtggtt
agaaatgtagctgttgcagacattttagaaattctatctttttacacagggaaggtttgt
ctggcagctttaaacagtcctgtgtcatgtgtattatcaggtcatgaagatgccatagac
agtctgcaccaaaagctgaaaactttagttatgaccaaaaacctttttctccatgttttg
gatgttcccgcagcttatcacagtcatatgatggatcctattttaagtcagatcaaagaa
agaataggagtcctacaggcaaatgaaaaggagtgtgaactttactcaacagtgacaggg
aagccaatgtctgcaggggacttcatcacaggtgaatactgggcacagaacatccgtgag
ccagttgcatttcaaaaggcaataaattcagcggccaaagacaaaactaatgtggtcttc
atagagataagcccaagaaaggctttgcagagaaacattatggaggtgctagggaatgat
atcactgttatgtcttcagtgcagccagacagagagcacgagacccttgttagtactatg
gctagactttttgagctggggttccaaattgactgggacaatgtatacagaggtcttgag
agccagccaatgtcccttcctaggtaccagtttgactgccttaaaaaagaggtttacttt
gagactgtgagacatgggcatgccattttaccatatcctgtgcatcccttactatcacag
atgaaggataacaacaaacagtatgcgtgtaacctctcatctgatgttgtaccctacttt
tgggaacataaaaacaatggagtggtgattgcccctggttctctttatgtggaactagct
tctgaagctgctatgcagttcatcaagccaaagaaacctctgtgttcactaaagcttagt
gtcactttccagagcttgtttgtgctcagcaaggaccccaatcaattgagggtacttctt
gagccatctgaaggcaagaccacatttgaaatatggtcttcatccactatgcatgcatct
ggcaccattatctatggaaaaggtccagcagttatagaggaggaagtcatcaactgtgat
attgtctcaaaaaggtgcccaataattattaccaaagaggaggtttactcacatctctca
ttggctggatttgaatatgggcctacattcagacaactgggtgaggtttgctatggaaga
gaattcagggaagccctgacaagcatcactgttccagatgaattgctgagccaactgtac
gagtacaggctgcacccggtggtgctggactggttcttacagatggcatctgtggtggtt
caagatggaacttgtgtaagaccttgtttcccctcagctatcaaaagtgtggtgatctcc
agaccattgcagagggtgatgaccatgtatctgagggtgactcgagagacaaatgaattt
tacgaagtgtgtggctgctttatagatctatcgggtcgtgtgctggttgaactaaaatgt
ttgagaatcacatttgtgcaaggaagccctcaggttgttgaattctttcataatgagtat
cgagccttaacagatggcatgaacactgtcaacagacctaaagctttagtatttgaggac
acactaggagtggccaaagctctgaagccttatttaaacccacaatctacttttgtttcc
ctctccaaatcagcctcttcagtgcctgcttggctcacccagtgccttgagactaaagct
ggtgtggaatttacagaggtgctgttcatgtggggcattcaaaacctgagccaaatgaaa
attgagactattttggacagtttagtcaaatgttgtgaactctaccgacaaattgtgctt
gctttgaggaagtatagtacctcatatgtcatacgtgtgatcacctacagatcatctggt
cttattgttgatcatgtcagccctggctttgttttatcaggtatgacaagagccctagca
gcagagatgtcgggcttctcttttcaattaattgaccttgcgtctgtgtcaaatgaagac
atacaggagttagcccacatcattagctgctctcagagcaaccagtaccccgagatcttg
ataagcaaaggtcatactcatttagctacgataacaagaagtccatatcatgattctaga
cattcagagacatgtatccattctttgacatctcaaagatttactcttcagactacagat
ccctacatgatggccaaactgtcagctgttacagttagttttgatgaaaccccaattctg
gataaaactgtggaagttaagcttgataaaatatgtgtccattcatctgacttctttcca
gttagtgtatctgactttcagtttggccagacactatactggtccaaacactccactcag
aaccacaagctcctggctcttgacttcagtggcactgtcacagatgtggggaaaggtgtg
agcaaactgaaggtgggtgatcacattgcatcctgttaccctgttgttgcctcctctaag
gttatacttcctgaggtggtatgctacaacactgcaaagctcccatttctaagagatgtc
ccatgtgtctcatacctcgtactcgcaagggaaatctttgaccacatattacccaaagac
acaaagaaattgcctgtgacaattctttcctgtgttcccagaactttggccaagttgctg
gttgagataggaaagactaaaggatggagtttgaatattcagactcatattaatgaccaa
aatgctgactatgctgtcattctgctgttgcctccttatgaccattctatgttggtgagt
gcaagcggaatatcttcagtgaagcacattgtagttgtctgtaaagaggaactgacttcc
cactcacacctcattcaacaaaagaatcaaaatgtgtctgtccatgttctgaaaacgtcc
agtgttctccagaaagccaaccttcaaagacagggtgaacatctggatcactggctacat
ggggtgacttgtggtaagatttgtatgcccatacaagagaataccgttcagagagaagtc
ttttctgagatgataacatccagcacacaaaatcactcgtattttaatgtggagaacatc
tctttgattgtgtgcaccaagactggttctcttcacacagaaacaaatgtccccttgctc
ccacaagccaaggaactcttccagaagaacagtgtgtacattgtatctgggggcttatct
ggattggggctggagaccctgaagttcattgctcacagaggtggaggctacattgtttcc
ctctccaggagtctgccctcagcagagattcaacacaaagttagtgcactccaaaggcag
tatggtgcgttggtgatgactctgaagtgtgatgtctcatccgtcacagatgtagtgaga
gccttcacagccattggccagaggtttccctcttgtccaatcagaggcgtgttccacagt
gcagctgtactgcatgatgggctgatcgagacccttgatagctcacacttcagaaaagtg
ctgagaccaaaagtgagtggagctttaaacctgcactatgcaacattacacagcaaacta
gattactttgtttgctattcctctatctcctctttcttgggaaatgcctctcaaacaaat
tatgctgccgccaattcttttctggataccttttgtcattatcgccacaaccttggactt
gttgggcagtccatcaactggggacctcttaatttgggcctgctgctgaacaaagtcaat
tttcaaaggttcttagaggcgaaaggattgacggtcatggagatctctgaggtacacgag
tccttggagagatgcttgttgacaaacaacacgcaacaggttgtttgcaagtttaatttc
agaaacctacaaaaccatgtcctttctcaaaacgcatctctcagggtacgactatcacca
ctggtacaacaggagctcaagggggaggggacagagccaatggtacaatctgtgaactct
gtggaggattatgtgaaacggttgctttgtgacctgagtaatgctgacattgacgagttg
agggagagcagcacacttacttctttaggcattgattcaatgtctgccatgactatgcag
aactgcatatttcaagactgtggtgtaaatgtgccattggtaaagatactggatccaaat
agcactatgtccagcctagttctaatcctgaaacagagtaatgatgtagatattgaaatc
caatctgtagggtga
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integrated database retrieval system
