Alosa sapidissima (American shad): 121688952
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Entry
121688952 CDS
T11137
Symbol
zeb1b
Name
(RefSeq) LOW QUALITY PROTEIN: zinc finger E-box-binding homeobox 1b
KO
K09299
zinc finger homeobox protein 1
Organism
asad Alosa sapidissima (American shad)
Brite
KEGG Orthology (KO) [BR:
asad00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
asad03000
]
121688952 (zeb1b)
Transcription factors [BR:
asad03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain ZF
121688952 (zeb1b)
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Gene cluster
GFIT
Other DBs
NCBI-GeneID:
121688952
NCBI-ProteinID:
XP_041924802
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Position
17:23551137..23601971
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AA seq
993 aa
AA seq
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MADGPRCKRRKQANPRRTSVSNYSAVVEGSSDSDDEDKLHIAEEEGSLPDGESVAPDDDP
NGTVDPEDRWDEAVKEECVSDGDDERSRDALVEEILQSGDTAIIYPEAPEDEPSQGTPEN
NENGTPDAFSQLLTCPYCSRGYKRYASLKEHVKLRHEKSEDNYSCSQCSYTFNQRAQLDR
HMSAHKNGRDQRHVTQSGGXRKFKCTECGKAFKYKHHLKEHLRIHSGEKPYECSNCKKRF
SHSGSYSSHISSKKCIGLLSVNGRSRPLVPPGPDSSPPPCPEPSPPREKPAKPAVPREPI
SIAHIKAEPLESELKPSVPTVPAGANTTTTTTTAAAPVPASAPAVXLPTVGLVSPVSISL
AQLQSLLKADPAGHVVXAAPTPPGPLIQTISLPLLDQDGHAKILINYSLDPGPGAQTHAR
AAAEEGGGSPWRRRPRRRRTTTPAHAPVCKPEREAEDLTLRKRKKSLDEEEQEKEEEEAT
KVAXGGRQRRGAVTDGRCDSVATATTPGEKSLQSVLKAYYALDAEPATAEIGRIAAAVSL
PPSTVTRWFRKMQPNGPRTVPANTSPSGGDAASQSSDVDISPQLTPDPTPSCSRSPSPSP
QAPAVSQSQPSSSPPSPGGPLNLSADGPIPCRGGLADGEGPLDLSLPKXASPRATTPNQA
SPPAMQDEPLNLTCAKKDATSSPITADCPSVPAAMAGPISLVATQLPMSTLVAISDQGGA
KTILIPQLAYTYATPTGDTLPDQANHTQVLHVNGQGGEDDASVESSVIVVQEEKMDVGVD
GVSEEQNDSDSGAPRRKMRRTEGGQYACDLCDKIFQKSSSLLRHKYEHTGKRPHECGICS
KAFKHKHHLIEHTRLHSGEKPYQCDKCGKRFSHSGSYSQHMNHRYSYCRKDAPGNAGRKD
XSPTAPTPTGAGRPPRSPAVTEEHRSPLRDSDERDESEEGDGEETAASGSVVDEDEIQVV
RVGDEGEEEDEEEEEEVEDGEMMKVVVMEEERE
NT seq
2979 nt
NT seq
+upstream
nt +downstream
nt
atggcggatggccccaggtgtaagcgcagaaagcaggcgaatccgcggaggactagcgta
agtaactacagcgctgtggtggagggcagctcggattctgatgatgaggacaagctgcac
atcgctgaggaggaaggcagcctccctgatggcgagagcgttgcccccgacgacgacccc
aatggaactgtcgaccccgaggacaggtgggatgaagcggtgaaggaggagtgtgtgtca
gacggagatgatgaacgcagcagagacgctctggtggaggagattctgcagtcgggcgac
acggccatcatctaccccgaggcgcccgaggacgagccatcacagggaacgccagagaac
aacgaaaatggcactccggacgcgttctcccagctgctgacctgtccgtactgctcgcgg
ggctacaagcgctacgcctcgctgaaggagcacgtgaagctgcgccacgagaagagcgag
gacaactacagctgctcgcagtgctcctacaccttcaaccagcgcgcacagctcgacaga
cacatgagcgcacacaagaacggccgagaccagcgtcatgtgactcagtctgggggcnaa
cggaagtttaagtgcactgaatgtggcaaagccttcaagtacaagcaccacctgaaggag
cacttgcgcatacacagtggagagaagccgtacgagtgctccaactgcaagaagcgcttt
tcccactcgggctcctacagttcccacatcagcagcaagaagtgcatcggcctgctgtcc
gtcaacggccggtcccgtcccctcgtccctccgggtccagactcgtccccaccgccgtgc
cccgaaccctccccgccccgcgagaagcctgccaagcccgctgtgccacgggagccaatc
tccatcgcccacatcaaagcggagcctctggaaagcgagctgaagccctctgtgccaacg
gtgcccgccggtgccaacaccaccaccaccaccaccacggcggccgcgccggtgcccgcc
tccgctccagctgttnngctgcccaccgtgggcctggtatcgcccgtgagcatcagcctg
gcgcagctgcagagcctgctgaaggcggatcccgcggggcacgtggtgnnggcagcgcca
acgccacccgggccgctcatccagaccatcagcctgccgctgctcgaccaggacggccac
gccaagatcctcatcaactacagcctggacccggggcccggcgcgcagacgcacgcccgt
gctgcagctgaagaaggaggcgggtcgccgtggcgacggcgcccccgacgacggcgcaca
acaacccccgcgcacgcgccggtctgcaagccggagagagaggccgaggacctgacgctg
aggaagaggaagaagagcctggacgaggaagagcaggagaaagaggaggaggaagcgacg
aaggtcgcgngaggcggtcgtcaacggcgaggagcggtcaccgacggccggtgcgactcg
gtcgccacggcgacgaccccgggcgagaagagcctgcagtcagtgctgaaggcgtactac
gcgctggacgcagagccggccacggcggagatcggccgcatcgccgcggcggtcagcctg
ccgcccagcacggtcacgcgctggttccgcaagatgcagccaaacggcccgcgcacagta
cccgccaacacaagcccctcaggcggcgacgcggcctcgcagagctccgatgtggacatc
tcgccccagctgacgccggacccaacgccctcatgttcgcggtcaccgtcaccctcgcca
caagcgcccgcggtcagccaatcgcagcccagctcctcccctccgagtcccgggggaccc
ctgaacctgtcggccgacggccccatcccgtgccggggcggcctggccgacggagagggg
cccctcgacctctcgctgccaaagnnggcgtctccgcgggcaacgacccccaaccaagcc
agcccgccggccatgcaagacgagccgctgaacctcacctgtgccaagaaagatgccacg
tcgtcccccatcaccgccgactgtccctcagtgcccgccgccatggccggccccatcagc
ctggtggccacgcagttgcccatgtctaccctggtggccatctctgaccagggcggcgcc
aagaccatcctcattccccagctggcctacacctacgccacgcccactggtgacacgctg
cccgaccaggccaatcacacacaagtgctgcatgtcaatggtcaaggaggagaggatgat
gccagcgtggagagttctgtaattgtggtgcaggaggagaagatggacgttggtgtggat
ggtgtgtcggaggagcagaatgactcggactccggtgcgcccaggcgaaagatgcgtcgg
acggaggggggtcagtacgcctgtgacctgtgtgacaagatcttccagaagagtagctcc
ctactccgccacaaatatgaacacacaggcaagcgtccgcacgagtgtggcatctgcagc
aaggcgttcaaacacaagcaccacctgatcgagcacacgcgcctgcactcgggcgagaag
ccctaccagtgcgacaagtgcggcaagcgcttctcccactccggctcctactcgcagcac
atgaaccaccgctactcctactgccgcaaggacgcgccgggcaacgccggacgcaaggac
nngtcgcccacggcgcccacgccaacgggggcgggtcggcccccgcgcagcccggcggtc
accgaggagcaccggtcgccgctgcgcgactcggacgagcgggacgagagcgaggaaggc
gacggggaggagacggcggcgtccgggagcgtggtggacgaggacgagatccaggtggtg
cgcgtcggagacgagggggaggaggaggacgaagaggaggaggaggaggtggaggatgga
gagatgatgaaggtggtggtgatggaggaggagagagag
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