Alosa sapidissima (American shad): 121689375
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Entry
121689375 CDS
T11137
Symbol
thoc5
Name
(RefSeq) THO complex subunit 5 homolog
KO
K13174
THO complex subunit 5
Organism
asad Alosa sapidissima (American shad)
Pathway
asad03013
Nucleocytoplasmic transport
asad03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
asad00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121689375 (thoc5)
09122 Translation
03013 Nucleocytoplasmic transport
121689375 (thoc5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
asad03019
]
121689375 (thoc5)
03041 Spliceosome [BR:
asad03041
]
121689375 (thoc5)
Messenger RNA biogenesis [BR:
asad03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
121689375 (thoc5)
Spliceosome [BR:
asad03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
121689375 (thoc5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FmiP_Thoc5
DUF2542
Motif
Other DBs
NCBI-GeneID:
121689375
NCBI-ProteinID:
XP_041925052
LinkDB
All DBs
Position
18:13551327..13562923
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AA seq
683 aa
AA seq
DB search
MASEVLKKRKPKVLRNEGGTPEMKRGRGEGDQDVRVYNEEAVLDNRTPEQDYEQYKDKCD
VIVKLMGEIQELKSSGAKEGSVEVEERRRECCIHFVTLKKLNRLAHMRLKKGRDQTQEAK
QRVDVLHLQLQNLLYEVMHLQKEIGKCLEFKSQHEEIELVSTEEFFNEAPSEISRPHLTK
DDPHQLTLARLDWELEQRKRLAEQYKTSLASKEKILKGIEVKKEYLGNLRPGLQSIMQAS
LPLQEYLSMPFEHVQKQADVARHLPPPLYVLLVQASAYGQACDKNLSVFISGDVDEAKAL
SKPREDSQDDESDSDAEEEQNTKRRRPTVGGQLDDKRKEMLKRHPLSLCIDLKCKDGSVL
HLFFYYLMNLNILTVKAKVSTPSHLTNVVSAGELLNAGTLLNCLYTADQGKETPNPANRY
QFDKVGIVTFGDYVGDLGHPYLWVQSLGGLQFPSDNPESAGVGSKLSASHMEHTMKLLRS
RLQARLALHKQFISLEHGIVPVSAECQDLFPAKVISRLARWTAITYQEFEEMPMAQHVLK
VGLAHETDLFFMAVVERGTARLNAVVVLNPRYPDVTPLFSLSLMWKGERTGRTDDNLRAM
ESEVNVFRSELQGPRPGHQLLTNQLQRLNVCLDVYLETESQVCDGMEGPREFPREKMCLR
TARGPNRLKPFKYNHPQGFFSHR
NT seq
2052 nt
NT seq
+upstream
nt +downstream
nt
atggcatctgaagtactgaaaaaacgtaaaccaaaagtgctccgcaacgagggaggaacc
cctgaaatgaaacgaggtcgtggagagggagaccaggatgttcgtgtttacaatgaggag
gcggtgcttgataaccggaccccagagcaagactacgagcagtacaaagacaagtgtgat
gtcattgtcaaactcatgggtgaaattcaggaactcaaatccagtggagccaaagagggg
tcagtggaggtcgaggaacgacgcagggagtgctgcatccactttgtgaccctaaagaag
cttaatcgtctcgctcacatgagactcaagaaaggtcgtgatcagacacaagaggctaag
cagcgggtcgacgtgctccatctgcagcttcagaatctcctgtatgaggttatgcaccta
caaaaggagattggcaagtgtcttgagttcaaatcccaacatgaggagatagagctggtc
agcactgaagagttctttaatgaagcgccgtctgagatttcccgtcctcacctcactaaa
gatgaccctcatcaactcacgctggctcgtctggactgggagcttgagcagaggaagagg
ttggcagagcagtacaagacatctcttgccagcaaggagaaaatcctaaagggaattgag
gtgaagaaagaatacctgggcaacctccggcctggactccagtccatcatgcaggcctcc
cttccccttcaggagtatctgtccatgccgtttgagcacgtgcagaagcaggcagacgtg
gcccgtcacctgccccctcccctctatgtgctgctggtgcaggccagtgcttatggccaa
gcctgtgataagaacctgtccgttttcatcagtggggatgtagatgaagccaaagcactc
tcaaagcccagagaggattcacaggatgatgaaagtgactcagatgctgaagaggagcag
aacacaaaacggcggaggcctactgtgggaggccagctggacgataaacgcaaggagatg
ctgaagcgtcaccctctgtctctctgtatagacctcaagtgcaaagacggtagtgtgctg
catctgttcttctactacctgatgaacctcaacatcttgactgtgaaggccaaagtgtcc
accccctcccacctgaccaatgtggtcagcgctggggagttgttgaacgcaggcacactg
ttgaactgcctctacaccgctgatcagggaaaagaaaccccaaatcctgcaaatcgctac
cagtttgacaaagtcgggatcgtcacttttggagattatgtgggagatttgggccaccct
tacttgtgggtgcagagtttgggtgggcttcagtttcccagcgacaaccctgagagcgcc
ggggtggggagcaagctgagcgccagtcacatggagcacaccatgaagctgctcaggagc
cgcctgcaggctcgcctggccctgcacaagcagttcatttcactggagcacggcatagtg
cctgtgtctgccgagtgccaggacctcttccccgccaaagtgatctcccgtctggctcgc
tggactgctatcacctaccaggagtttgaggagatgccaatggcgcagcatgtgctgaag
gtcggcctggctcacgagactgacctcttcttcatggcggtggtggaaagaggaacagcc
cgtctgaatgcagtcgtggtgctgaacccccgctaccccgacgtcacgcccttgttctcc
ctctctctgatgtggaagggcgagcgcactggacgcacagacgacaacctgcgggccatg
gagagtgaggtcaacgtcttcaggtcggagcttcagggaccgcgccctggccaccagcta
ttgaccaatcagctccagcggctgaacgtgtgtctggatgtgtacctggagacggagagc
caggtgtgtgacgggatggaaggaccgagagagttccccagggagaagatgtgcttacgc
acggccaggggtccaaatcgtctgaaacccttcaagtacaaccatccgcagggtttcttt
agccatcgctga
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integrated database retrieval system
