Alosa sapidissima (American shad): 121689399
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Entry
121689399 CDS
T11137
Symbol
si:cabz01101003.1
Name
(RefSeq) ubiquitin carboxyl-terminal hydrolase CYLD isoform X1
KO
K08601
ubiquitin carboxyl-terminal hydrolase CYLD [EC:
3.4.19.12
]
Organism
asad Alosa sapidissima (American shad)
Pathway
asad04217
Necroptosis
asad04622
RIG-I-like receptor signaling pathway
asad04625
C-type lectin receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
asad00001
]
09140 Cellular Processes
09143 Cell growth and death
04217 Necroptosis
121689399 (si:cabz01101003.1)
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
121689399 (si:cabz01101003.1)
04625 C-type lectin receptor signaling pathway
121689399 (si:cabz01101003.1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
asad01002
]
121689399 (si:cabz01101003.1)
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
asad04121
]
121689399 (si:cabz01101003.1)
Enzymes [BR:
asad01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
121689399 (si:cabz01101003.1)
Peptidases and inhibitors [BR:
asad01002
]
Cysteine peptidases
Family C67
121689399 (si:cabz01101003.1)
Ubiquitin system [BR:
asad04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
UBP/USP
121689399 (si:cabz01101003.1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAP_GLY
UCH
Motif
Other DBs
NCBI-GeneID:
121689399
NCBI-ProteinID:
XP_041925111
LinkDB
All DBs
Position
18:complement(18706390..18721107)
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AA seq
975 aa
AA seq
DB search
MSGVTRNQSRRRRPPKMFLVASDMKIQDHLDGTIRVLRGYLCQEQESLEKNGKVEQLWVK
VLDNGGMVKIDRRVLIEIPPDQAGLLEPVPEPEARLKLFSKPHRLQRLALLPLGSPVTVV
INQDLAEAELRYRGPLTGGSSAVFFGVQLKGRAAGKGFSNGSYKGHQLFTCPEACALFVS
ASQLTLRRSSHETDAERYPSHTAGVPHNPVAGPSTGVQQPVSVLPRTAESVPGPAPPLLP
QGQRVMFTQDEVTQTGKVAFCGALPGRSSGGLYVGLILDNPVGSWDGTYNNHKLCSLPSP
HYGHLLPLSKVTPVETRPQKSPPPVVNPRRALMPPSLPPPKPAPVPVLPPFPKTSLKPVT
APKPTSPNLPVTASSPPPYHSKVPLQPPAKMAASLPSVAPKSPPPPPPANLKPSVRPPPM
PLYPSTDQSRSSSNGLPRPPSPPQPEEAEFEAEEADTGPGLGLELGSMVEVNEPPQYGVI
RWIGRIQGISQLVAGVELDQEITAGTDGSYLGERYFRCPPNKGLFVKLRSCRRDSRFPAP
ETRINQVERCNSIAFAEWGSERVEEHTPPVSGPEARQHYHGWKKGIQGHLNSCYLDATLF
SLFSCCSSADSVLFCPPRLQDGAHSRTAQDLLRCEIVNPLRRYGYVCASKTMALRKLLEA
ETTDAGFTNQEKDPEEFLNKLFQLLRVEPLLRIRSMNHQPQECHLYQLFPPSTAPSPSSP
ALSPSLSPGPLSPIPLSPPVGHLRVASVQALLEASFIHSGLKFAEAPSCLPLLMPRFGKD
FKMFDAILPSLTLDITDLLDETLRQCSICQSLAHWECLQCYEDQDITPGRLKQFCHTCNT
QVHTHKKRASHHSERVRAPEGPWAEQWEGPLGGSRQRLELFAVTCIETSHYVSFVRHGPL
PTDWLFFDSMADREGGENGFNVPQVRSCPEVGRYLSLSEEELSRLDPASLRDTVRRLLCD
SYMCLYHCPQISLYK
NT seq
2928 nt
NT seq
+upstream
nt +downstream
nt
atgtccggagtcacacgtaaccaaagcagaagacggcgtcctccaaaaatgtttctggtg
gcgtccgatatgaagatccaggaccacctggatggaaccattcgggtgctacgggggtac
ttgtgccaggagcaagaaagcctggaaaagaatgggaaagtggagcagttgtgggttaaa
gtactagacaacggcgggatggtcaagattgacaggcgcgttctaattgagatacccccg
gaccaggccggccttttggagccagttccagagccggaggcccgacttaaacttttcagc
aaaccccatcggctgcagcgcttggctctcctgcctttgggatcacctgtaactgtggta
ataaaccaagacttggctgaggcagagcttcgatacaggggaccccttactggagggagt
tcagccgtgttctttggggtacagcttaagggtcgggcagcagggaagggctttagcaac
ggctcctacaagggccaccagctcttcacctgcccggaggcgtgcgcactcttcgtctcc
gccagccagctcaccctgcggcgctcctcgcacgagaccgacgccgaacgctacccgtct
cacacagctggcgtcccgcacaaccccgttgccggtccctccaccggcgttcagcagccg
gtgagcgtcctgcctcgcacggcggagtctgtcccgggtccggctccgccgctgctgccg
cagggccagcgggtgatgttcacccaagacgaggtcacgcagacagggaaggtggcgttc
tgtggggcccttcctggcaggagctccggaggactgtatgtgggcttgattctggacaac
ccggtgggttcgtgggatggcacgtataacaaccataagctgtgctccctcccatctcct
cattacggtcacctcctccccctgtccaaggtcactccagtggaaaccagaccccagaag
tccccccctccagttgtgaaccccagacgcgccctgatgcccccttccttgcccccccca
aaacccgccccggtgcctgtgctgccccccttccccaaaacgtccttaaagcctgtaact
gcccctaaacccacctcgccaaatctcccagtcactgcgtcgtcccctcctccttaccat
agtaaagtacctcttcagcccccggcaaagatggccgcctcgctcccgagcgttgccccg
aaatccccgccaccccctccccccgccaacctcaagccctccgtcaggccgccgcccatg
ccactttaccccagcacggaccaatcccgctcgagctccaacggccttccgcgcccgccc
tcccctccgcagccagaggaggcggagtttgaggcggaggaggcggacacggggccgggg
ctgggtctggagctggggtccatggtggaggtgaacgagcctccgcagtacggagtcatc
cgctggatcggacgcatccaaggcatttctcagctcgtcgctggagtagagctggaccag
gagataacggcgggcacagatggcagttaccttggcgagcgctacttccggtgcccgccc
aataagggcctgtttgtgaagctccgcagttgtagacgggactccaggttccccgccccc
gagacgcgaatcaaccaggtggaacgctgcaactccattgcgtttgcagagtggggtagt
gagcgtgtcgaggagcacaccccgccagtatccggcccagaggccagacaacactaccat
ggctggaagaagggcatccagggacacctcaactcctgctacctggacgccactctcttc
agtctgttctcctgctgtagttctgcagactccgtgctcttctgtcccccgaggctgcag
gatggcgcccacagtcgcacagctcaggacctactacgctgcgaaattgtcaaccccctg
cgcaggtatgggtatgtgtgtgccagtaaaaccatggccttacggaaactattagaggcg
gaaacgacagatgctggcttcaccaatcaggagaaagacccagaggagttcctcaacaag
cttttccagctcttgcgggtggagcctctcctgagaatcaggtcaatgaaccatcagcct
caggagtgtcacctctaccagctcttccctccctccacggccccctctccatcctctcct
gctctctctccatccctctctccgggccctctctcccccatccctctctcccctccagtc
ggtcacctgagggtggccagtgtgcaggcgctactggaggcctccttcatccactcaggg
ctcaagtttgctgaggctccctcctgtctgcctctgctcatgcccaggtttgggaaggac
ttcaagatgttcgacgccatcctgccatcactaaccctggacatcacagaccttctggac
gagactctgcggcagtgtagcatctgccagtcgctggcccattgggagtgtctgcaatgc
tatgaggaccaggacatcacgcctggccgcctcaaacagttctgccacacctgcaataca
caggtgcacacgcataagaagcgcgcgtcgcaccactctgagcgtgtgcgggcccccgag
ggcccctgggcggaacagtgggaggggccactgggtggcagccggcagcggctggagctc
ttcgccgtcacctgcattgaaacgagccactacgtcagcttcgtgcgccacggaccgctg
cccaccgactggctcttcttcgacagcatggccgacagggagggtggggagaatggcttc
aatgtgcctcaagtgaggtcgtgtccagaggtaggccgctacctcagcctatccgaagag
gagttgagcaggctggaccccgcctccctgcgtgacaccgtccgtcggctgctctgcgac
tcttacatgtgtctgtaccactgcccccagatcagcctctacaagtga
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