KEGG   Alosa sapidissima (American shad): 121689587
Entry
121689587         CDS       T11137                                 
Symbol
per1b
Name
(RefSeq) period circadian protein homolog 1b isoform X1
  KO
K21944  period circadian protein 1
Organism
asad  Alosa sapidissima (American shad)
Brite
KEGG Orthology (KO) [BR:asad00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:asad03400]
    121689587 (per1b)
DNA repair and recombination proteins [BR:asad03400]
 Eukaryotic type
  Check point factors
   Other check point factors
    121689587 (per1b)
SSDB
Motif
Pfam: Period_C Per3-like_PAS-A bHLH_PER PAS_3 PAS_11 PAS
Other DBs
NCBI-GeneID: 121689587
NCBI-ProteinID: XP_041925420
LinkDB
Position
18:complement(10527187..10551538)
AA seq 1463 aa
MSYENHDTAPSNGTRGGGGQADEEEDAGHGSPDMSGGSTSPEGVNRDSGSSPSGASGGAG
GSSGGDPRGTNSDDTDALSSGNDSGERESEERENGSRGMQFPRSYQSSSSHNCKDSGMLE
TTESNKSLNSHSPSPPSSSVGYSLLSGGSSERDPPSTSGCSSDQSARVQTQKELMKALKE
LKIRLPAERKPKGRSSTLNALKYALSCVKQVRANQEYYHQWNIEECHGCSLDLSAFTIDE
LDNITSEYTLKNTDTCSIAVSFLSGKVVYISPQSSSLMRCKPERLQGALFSELLAPQDIS
TFYSSTAPCRLPPWAACIGSASPPVDCTQEKSMFCRISADVLHGGEMRYYPFRLTPYQLT
LRDSDASEPQPCCLLIAERVHSGYEAPRIPPDKRIFTTSHTPSCLFQEVDERAVPLLGYL
PQDLVGTPVLLYVHPEDRHIMVAIHKKILQFAGQPFDHSPLRMCARSGEYLTIDTSWSSF
VNPWSRKVAFIVGRHKVRTSPLNEDVFTPPRAAEGRSMVPEIPQLSEQIHRLLAQPVHCG
GSQGYSSLTSSGGGSHEQHQSAASSSESNGPVPEDVIAVAQLLKPMTFQQICKDVHMVKT
SGQQVFIESRNRPPPRKHANTGASGSLRAIRASEPITSFNPQTALPPKSTAPSQLMMKEP
PSAYSYQQINCLDSIIRYLEGCNLPSTVKRKCGSSSCTASSTSDDDKQQDTAGNSKGPAV
ALVGEAPPLPPLALPKPESVASVTSQCSFSSTIVHVGDKKPPESDIVMEDAPPTPTSAPP
TVQVSVTPTTAATFSPPPVPVTPAPAPSPAPPAERESRRGGGASRRGLTKEVLSAHTQQE
EQNFLYRFRDLSQLRVFDSATSLKRPTTTPLARGVRCSRDYPAAGSSSRRRGRGGKRLKH
QESIDQGSRSLRGPTGPPVPNVAAPPTNTFPLGPPTTSSSWPTSVGSQASLPSVPYPPGM
LPLYPLYPPLTDPSLQAGLRFPLQNVPMSPQMVPPMMALVLPNYMFPQMNAACSAAGMGT
VPFFNPNSAFVPPPFAAASAGVNPGMASLPPSTLQQMPQTPTPTLTTATLTQGPRPASRS
STPLSVSQREAGGDREESMLLPSSRCSSPLNLLQLEEPPSNRLEGSAQQTMSTGGQGAGA
GGQRGGAEDKENESGEANESNNDAMSTSSEFLDLLLQEDSRSGTGSAASGSGSSGSGSSG
SGLGSSGSSGSGLGSGSGSGSNGCSSSGSRTRSSQSSNTSKYFGSIDSSENDHSRKQSAG
GDGEAQFIKCVLQDPIWLLMANTDDKVMMTYQLPTRDRETVLREDRMALRAMQKHQPRFT
EEQKRELSQVHPWIRTGRLPRAINITACQGCKSPTATPPAPPFDVEIHEMELCSVLTATE
ERASAEKLTQADTAMEEGEGDVEAERPAAEREQRRKGSEDEVVVVEEDAETDNALGKDQE
MATEEKEMTSSQSEQGKVTVMTH
NT seq 4392 nt   +upstreamnt  +downstreamnt
atgagttatgagaaccatgacaccgcccctagcaacggcacacggggcggaggggggcag
gcggacgaagaggaagatgccggccacggttctcccgacatgagcggaggctccacgtcc
ccggaaggcgtcaacagggacagcggctcgtccccgagcggcgcgtcgggaggggccggc
ggctcgtcgggcggcgacccacggggcacgaactcggacgacacggacgcgctgtcgagc
ggcaacgactccggcgagcgggagagcgaggagcgagagaacggctcgcgagggatgcag
ttcccgcgcagctaccagagctcgtccagccacaactgcaaggactcggggatgctggag
acgacggagagcaacaagagcttgaactcacacagcccgtcccctcccagcagctcggtg
ggctacagcctgctgagcgggggcagctcagagcgggacccccccagcaccagcggctgc
agcagtgaccagtcggcgcgcgtccagacccagaaggagctcatgaaggccctcaaggag
ctcaagatccgcctgccggccgagcgcaagcccaagggccgctcgtccacactcaacgcg
ctcaagtacgcgctcagctgcgtcaagcaagtccgagccaatcaagagtactaccaccag
tggaacattgaggagtgccatggctgcagtctagacctctccgcttttaccatagatgag
ctagacaacatcacatctgagtacaccctcaagaacactgacacctgttcgatcgccgtg
tccttcctgtcggggaaggtggtgtacatctcgccgcagagctcctcgctgatgcgctgc
aagcccgagcgcctgcagggggcgctcttctccgagctgctggccccccaggacatcagc
accttctacagcagcacggcgccatgccgcctgccgccctgggccgcctgcatcggctcc
gcctccccgccagtggactgcacgcaggagaagtctatgttctgccggatcagtgccgac
gtgctgcacgggggcgagatgcgctactacccgttccgcctgacgccttaccagctgaca
ctgcgcgactcggacgcctcagagccccagccctgctgcctgctcatcgccgagagggtc
cactctggatatgaagcccctcgtatccccccagacaagaggatcttcaccaccagccac
actcccagctgcctcttccaggaggtggacgagagagcggtgccgttgctaggttacctg
ccacaggacctggtaggcacaccagtgctactctacgttcaccctgaggacagacacatt
atggtggctattcacaagaagatcctccagtttgctgggcagccctttgaccactctccc
ctgcggatgtgcgcacgcagcggggagtacctcaccatcgacacctcctggtcctccttc
gtcaacccatggagcaggaaggtggccttcattgttggacgccacaaagtcagaacgagc
cctctgaacgaggacgtgttcactccaccacgggccgccgagggccgctccatggtcccc
gagatcccgcagctgagcgagcagatccaccggctcctggcgcagcccgtccactgcggc
ggctcgcagggctacagcagcctgaccagcagcggtggtggctcgcacgagcagcaccag
agcgccgccagctcgtccgagagcaacggcccagtgccggaggacgtcattgccgtggcg
cagctcctcaagccgatgaccttccaacagatctgcaaggacgtacacatggtgaagacc
agcggtcagcaggtgttcattgaatccagaaatcgcccaccaccacggaagcatgccaac
actggggccagtgggtctttgagagccatcagagcctctgagccaatcaccagcttcaac
ccgcagacggccctgccccccaagagcacggctccctcacagctcatgatgaaggagccg
cccagcgcctactcctaccagcagatcaactgcctggacagcatcataaggtacttggag
ggctgtaacctgcccagcacggtcaagaggaagtgcggttcctcctcttgcacggcctcc
tccacctctgatgatgacaagcagcaggacactgccggcaactctaaaggtccggcggta
gctcttgtgggggaggctcctcctctaccccccctcgcattgcccaaacccgaaagcgtc
gcctcggtaacctctcagtgcagtttcagcagcaccatcgtccacgtgggagacaagaaa
ccgcctgagtcagacatcgtcatggaggacgcccctccgacccctacgtcagcacctccc
actgtccaagtttcagtgacccctaccaccgccgccaccttctcacctcccccggtgccc
gtgacgcccgcgcccgcgcccagccccgcgcctccggccgagagggagtctcgccgagga
ggcggcgcgagcaggcggggcctgacgaaagaggtgctgtcggcgcacacgcagcaggag
gagcagaacttcctgtaccgcttccgtgacctgagccagctgcgcgtgttcgactcggcc
acctcgctgaagaggcccaccactacaccactggccagaggggtgcgctgttcccgtgac
taccctgcagcaggcagcagtagtcggcgtcggggccgaggcggcaagcgcctgaagcac
caggagtcgatcgaccagggcagccgatccctgcgaggcccaacggggccccccgtgccc
aacgtggcggccccccctaccaacaccttccccctggggcccccgaccacctcctcgtcc
tggcccacgtccgtgggctcccaggccagcctgccgtcggtgccctacccgccgggcatg
ctgcccctctacccgctgtacccgccgctgaccgacccgtcgctgcaggccggcctgcgc
ttccccctgcagaacgtccccatgtcgccgcagatggtgccgcccatgatggcgctggtg
ctgcccaactacatgttcccgcagatgaacgcggcctgctctgctgccggcatgggcacc
gtgcccttcttcaaccccaactcggccttcgtgccgccacccttcgccgcggcgagtgcc
ggggtcaaccctggcatggcgtcgctaccgcccagcaccctgcagcagatgccgcagacg
ccgacgccgacgctgacgacggccaccctcacccaggggccccggcccgcgtcccgctcc
agcacgccactgtccgtcagccagagggaggccggcggcgaccgggaggagtccatgctc
ctgccctccagccgatgctcgtccccgctcaacctgctccagctcgaagagccgcccagc
aaccgcctggaagggtccgcccagcagaccatgtccacgggagggcagggggccggggcc
ggtggccagagaggtggagccgaggacaaggagaatgagagcggcgaggccaatgagtcc
aacaatgacgccatgtccacctcgagcgagttcctggacctcctgctccaggaggactcc
aggtcgggcacggggtcggccgcctctggctccgggtcctcgggctcagggtcctctgga
tccggtttggggtcctcggggtcctcgggctcaggcttaggctcgggctcaggctcgggc
tccaacggctgcagctcgtcggggagccggaccagaagcagccagagcagcaacaccagt
aaatactttggcagcatcgactcgtcggagaacgaccactcccgcaagcagtcagcaggg
ggcgacggcgaggctcagttcatcaagtgtgtgctccaggatcccatctggctccttatg
gccaacactgacgacaaggtcatgatgacctaccagctgcccaccagagaccgtgagacg
gtgctgcgtgaggaccggatggctctgagggccatgcagaagcaccagccgcgcttcact
gaggagcagaagagagagctgagccaggtccacccgtggatccgcaccgggcgcctgccc
cgtgccatcaacataacggcttgccaagggtgcaaatcccccaccgccactccaccagca
cctccctttgatgtggagattcacgagatggagctctgcagtgtcctcactgcgacagag
gagcgcgcgtccgctgagaaactgacccaggccgacaccgccatggaggagggcgagggc
gacgtggaggcagagcgtccagcggcagaaagagaacagaggaggaaaggatccgaggac
gaggtggtggtggtagaggaggacgccgagacggacaatgcactgggcaaagaccaggaa
atggcaacggaggagaaggaaatgacgtcatcacaatcggagcaggggaaagtcacagtg
atgacccactga

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