Alosa sapidissima (American shad): 121689678
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Entry
121689678 CDS
T11137
Symbol
clasp1a
Name
(RefSeq) CLIP-associating protein 1a isoform X1
KO
K16578
CLIP-associating protein 1/2
Organism
asad Alosa sapidissima (American shad)
Brite
KEGG Orthology (KO) [BR:
asad00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
asad03036
]
121689678 (clasp1a)
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
asad04812
]
121689678 (clasp1a)
Chromosome and associated proteins [BR:
asad03036
]
Eukaryotic type
Centrosome formation proteins
Microtubules and associated factors
Microtubule-associated proteins
121689678 (clasp1a)
Cytoskeleton proteins [BR:
asad04812
]
Eukaryotic cytoskeleton proteins
Microtubules
Tubulin-binding proteins
Cytoplasmic linker proteins (CLIPs)
CLIP-associating proteins
121689678 (clasp1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLASP_N
HEAT_EF3_N
XMAP215_CLASP_TOG
CEP104-like_TOG
HEAT
TOR1L1_N
HEAT_EZ
Adaptin_N
Cnd1
Sec7-like_HUS
HEAT_DAAF5
ParcG
Paxt-1_C
TAN
MMS19_C
RYDR_ITPR
Motif
Other DBs
NCBI-GeneID:
121689678
NCBI-ProteinID:
XP_041925627
LinkDB
All DBs
Position
2:complement(11191543..11318757)
Genome browser
AA seq
1643 aa
AA seq
DB search
MEPNMENCLAQVLQKDVGRRLQLGQEIIDYINDREKSHDLEQDQSTLDKMVEGVATSWVN
SSNFKLALLGMDILSALLNRLQDRFRGQVSTVLPSLMDRLGDAKDQVRDQDQTLLLKIMD
QAANPQYVWDRMLGGFKHKNNRTREGVCLCLIGTLNAYGAQALTLSKIVPHICSLLGDPT
SQVRDAAMSCLVEIYRHVGERVRTDLTKKGLPQSRLNVIFSRFDEVQRSGNMIPSSSSDK
NFDDEDSVDGGRSSSSSSSRGPPSGRRGGAMGSMRRPSSASSKGPAGKEGASAGAVDEDD
FMKAFEDAPALQIYSSRDLEDSINKIKEVLSDDKHDWEQRVTALKKVRSLLMAGALDHEG
FSQQLRQMEPAFKLSAKDLRSQVVREACITLGHLSFLLGNKFDHTAETIMPTLLNLVPNS
AKVMATSGVACIRLILRHTHYPRLIPIITSNCTSKSVAVRRRCYEFLDLMLTEWPGNTLE
KHVAVLSETIRKGIHDADSEARSIARKCYWSFHGHYGREAEHLYQALESSYQKALQSHLK
GSDSVMSLPQSDRSSSSSQESLNRPFSVKSVIGGSMTRSKVVSSRAPATPGSLQRSRSDV
DVNAAASAKSRMSTVPSATPFSSAAALPPGSYASLDGAPGRPDGRVRTRRQSSGTTVGSS
STVTDSRGRSRAKVVSQSQRSRSANPTSAGSRSSSPGKLLGHTYGRIPRSTVTATTPSTD
KRPRVPRSQGCSRETSPSRLGLARLCGKALVPAASPYRTLARTSRIPRPSMSQGCSRDTS
RESSRDTSPARGFAPLASRRHSRSTSALSTTDPVGQSDRYSLMHQARMSASINAMRVLNT
GTEVEAAVADALLLGDSRNKRKPLRRRYESPGIYSDDDANSDASSACSERSYGSSRNGGL
PHYLRQTEDVAEVLNHCASSNWSERKEGLLGLQNLLKSQRILSRVELKRLCEIFTRMFAD
PHSKRVFSMFLETLVDFIMVHREDLQDWLFVLLTQLLKKMGADLLGSVQAKVQKALDVTR
ESFPFDQQFNILMRFIVDQTQTPNLKVKVAILRYIEALARQMDPPDFVNSSETRLAVSRI
ITWTTEPKSSDVRKTLHNWAGEELSGRPSTSSLMPGEINMEERCKQAAQVVLIALFELNT
PEFTMLLGALPKTFQDGATKLLHNHLKNSSNTGVSSPSNTIGRTPPRLPSSRTSPLTSPT
NCSHGGLSPSRLWGWGVDGLSKHPSPPHPPPPHSLPTNPSSLRALRCAYSPSLLEYDTEN
MNSEEIYSSLRGVTEAIQSFSYRSQEDLNEPVRRDGKKDEAVGREGASPGGDARLGLDMV
DGGGGRTALDNKTSLLNTPSPRSFGVPRAREHAPYGYADTISAYDKSALKEAVFDDDVEQ
FRDSRRQDCGENKMVLPKGLAPVDHSELVAELLKELSNHNERVDERRGALVELLKMTRED
SVAVWDEHFKTILLLLLETLGDQDHTIRALALRVLKEILRNQPARFKNYAELTIMKTLEA
HKDSHKEVVRAAEESASTLASSIHPEQCIKVLCPIVQTADYPINLAAIKMQTKVIERIAK
DSLITLLPDIIPGLLQGYDNTESSVRKASVFCLVAIYSVIGEDLKPHLAQLTGSKMKLLN
LYIKRAQTTNSNSSSSSDVSSHS
NT seq
4932 nt
NT seq
+upstream
nt +downstream
nt
atggagcccaacatggagaactgtctggctcaggtgctgcagaaggatgtagggagacgg
ctgcagctgggccaggagatcatcgactacatcaacgaccgcgagaagtcccacgacctg
gagcaggaccagtccacgctggacaagatggtggaaggcgtcgctacctcttgggtcaac
tccagcaacttcaagttggctttgttaggaatggacattctctctgccttactgaacaga
ctgcaggaccgcttcagaggtcaggtgtcaacagttctgcccagcttgatggaccgcctg
ggggacgccaaagaccaggtccgggaccaggaccagaccttactcctcaagatcatggac
caggctgccaacccacagtatgtgtgggaccggatgctcgggggcttcaagcacaagaac
aaccgaacacgagagggagtgtgtctgtgcctcatcggcaccctcaacgcatatggtgcc
caggctctcacccttagcaagattgtcccccacatatgcagccttttgggagaccccacc
agccaggtgcgggacgcagccatgagctgtctggtggagatctacaggcacgtgggggag
agagtgaggacggacctcaccaagaaagggcttccacagtccaggttgaatgtaatcttc
agcaggtttgatgaagtgcagcgatcggggaacatgattccgtcgtccagctcagataag
aactttgatgatgaagactctgtggacgggggccggtcctcctcgtcttcctcgtccaga
ggcccacccagcggccgcaggggcggagccatgggctccatgcgaaggcccagctctgcg
tcgtctaaggggccagcagggaaagagggagcgagtgcgggcgcagtggacgaggatgac
ttcatgaaagccttcgaggatgcgccagcgttgcagatctactccagtcgagacctggag
gactccatcaataagatcaaggaggttctgtctgacgacaagcatgactgggaacaaaga
gtcactgctctgaagaaggtgcgctctctgctgatggcgggggctctggatcacgagggc
ttctcccagcagctgcgtcagatggagccggcctttaagctctccgccaaagacctgcgc
tcacaggtggtgcgcgaggcctgcatcacgctgggacacctgtccttcctgctggggaac
aagtttgaccacaccgctgagaccatcatgcccacgctgctgaacctggtacccaacagc
gccaaggtcatggccacgtccggcgtggcctgcatccgcctcatcctcaggcacacccac
tacccacgcctcatccccatcatcaccagcaactgcacgtccaaatcagtggccgtcagg
agacgctgttatgagttcttagacctgatgttgacagagtggccggggaacaccttggag
aaacacgtggccgtgctctccgagaccatcaggaaaggcatccacgacgcagactctgaa
gctcgctccatcgccaggaagtgttattggagtttccatggccactatggccgagaggcg
gagcatctgtaccaggctctggagtcgtcctatcagaaggctctgcagtctcacctgaag
ggctcggacagcgtcatgtccctcccccagtctgaccgctcctcctccagctctcaggag
agcctgaaccggcccttctcagtgaagagtgtgataggaggcagtatgaccaggagtaag
gtggtgagctcgcgagccccagccactcctggctcgctccagcgttcccgtagcgatgtc
gatgtcaacgcagcggccagcgccaagtcccgcatgtccacggtgccctcggctacaccc
ttcagctcggccgccgccctgcccccgggctcctacgcctcactggatggcgcgcctggc
aggccagatggccgagtgcgtaccaggagacagagctctggcaccacggtggggtcaagc
agtacggtcacagatagccgtggtcggagccgggccaaggtggtgtcccagtcccagcga
tccagatcagctaacccaaccagtgctggtagtcgttccagttctccaggaaagctcctg
ggtcacacgtacggcaggatcccccgctccaccgtcacggccaccactccatccacggac
aagcgcccccgggtcccccgcagccagggctgcagccgcgagaccagccccagccgactg
ggcctcgccaggctgtgtggtaaagctcttgttcctgccgcttctccctaccgcacgcta
gcccggaccagtcgcatcccccggcccagcatgagccagggatgcagccgtgacaccagt
cgcgagagcagccgcgacaccagccccgcgcggggcttcgcccctctggcttcccgacgt
cactcgcgttccaccagcgctctatccacgaccgaccccgtagggcagtcagatcgttat
agtctgatgcatcaggctcgcatgtccgcatccataaatgccatgagggtcctcaacacc
ggcacagaggtggaggcagccgtcgcagatgcactgctgttaggagactccaggaataag
cgaaagccattgaggcgacgctacgagtccccggggatatactcggacgatgacgccaat
agcgacgcgtcaagcgcctgctcggaacgttcgtacggctcgtcgcggaacggcggcctg
ccgcactacctgcgccagacggaggacgtggccgaggtgctgaaccactgcgccagctcc
aactggtccgagaggaaggagggcttgctgggcctgcagaacctcctcaagagccagcgc
atcctcagtcgggttgagctgaagagactgtgtgagatcttcaccagaatgtttgctgac
ccacacagcaagcgagtgtttagcatgttcctggagacactggtggacttcatcatggtg
cacagagaggacctgcaggactggctcttcgtcctgctcacccagctgctgaagaagatg
ggcgcagatctgctgggctccgtccaggccaaggtccagaaggccctggacgtcaccagg
gagtcatttccattcgatcaacagttcaacatcctcatgcgattcattgtggaccagacg
caaacgcctaacctcaaggtcaaagtagccattctgaggtacatcgaggcgctggctcgt
cagatggaccccccagactttgtgaactccagtgagacgaggctggcggtgtcccgcatc
atcacctggaccacagaacccaagagctcagacgtcaggaagactctccataactgggcc
ggtgaggagctctcggggcggcccagcacctcgtccctgatgccgggagagattaacatg
gaggaaaggtgtaagcaggcggctcaggtggtcctgatcgccctgtttgagctcaacacg
ccggagttcaccatgctgctgggcgcgctgcccaagaccttccaggacggcgccaccaag
ctgctgcacaaccacctcaagaactccagcaacactggcgtgagttctccgagtaatacc
attggacgcactcctcccaggcttccgtccagccggacgagtccgctcacatcaccgaca
aactgctcccatggcggcctttcacccagtcgtctctggggctggggtgtggacgggctc
tctaagcacccctcccctccccatcctcctcctcctcactccctccccaccaacccctcc
tccctcagggccctgcgctgcgcgtactctcccagcctgctggagtacgacacggagaac
atgaactcggaggagatctacagctcgctgcgtggcgtcaccgaggccatccagagcttc
agctaccgcagccaggaggacctcaacgagcctgtgcgccgcgacggcaagaaagatgag
gcggtgggtcgtgagggtgcgtctccaggcggtgatgcacgtctgggcctggacatggtt
gatgggggtggcggccgcacagcactggacaacaagacatccctcctgaacacgccctct
ccccgctccttcggcgtcccccgcgctcgcgaacacgccccgtacggctacgcagacacc
atcagcgcctacgacaagagcgcgctcaaagaggccgtgtttgacgatgacgtggagcag
ttccgagacagccgtcgtcaagactgcggtgagaacaagatggtgctgcccaagggctta
gctcctgtggaccactcggagttggtggcggagcttctgaaggagctgtccaatcacaac
gagcgtgtggatgagcgccgcggggcattggtggagctgctaaagatgacccgggaggac
agcgttgccgtctgggacgagcacttcaagaccatcctgctgctactgctggagacgctg
ggggaccaggatcacactatcagggctctggctctgcgggttctaaaggagatcctgagg
aaccagccagcccgcttcaagaactatgcagaacttaccatcatgaagaccctcgaggcc
cacaaagactctcacaaggaggtggtgcgggcggcagaagagtccgcctccaccctggcc
agctccatccacccagagcagtgcatcaaggtgctgtgccccatcgtgcagacggccgac
taccccatcaacctggccgccatcaagatgcagaccaaagtcatcgagcgcatcgccaag
gattcgctcatcacactgctgcccgacatcatcccaggcctgctgcagggctacgacaac
acagagagtagcgtccgcaaagccagtgtgttctgcttggtggccatctactctgtcatc
ggagaagatctcaagcctcacctggcccagctcacagggagcaagatgaagctgctgaat
ttgtacatcaagagggcccagaccaccaacagcaacagcagcagctcgtcggatgtgtcg
tcgcacagctag
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integrated database retrieval system
