Alosa sapidissima (American shad): 121690240
Help
Entry
121690240 CDS
T11137
Name
(RefSeq) interferon-induced very large GTPase 1-like isoform X1
Organism
asad Alosa sapidissima (American shad)
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
fn3
RHD3_GTPase
Pur_ac_phosph_N
Dynamin_N
Interfer-bind
Fn3_ELFN
MMR_HSR1
SAMP2
FN3_Tor_3rd
K319L-like_PKD
Motif
Other DBs
NCBI-GeneID:
121690240
NCBI-ProteinID:
XP_041926607
LinkDB
All DBs
Position
18:complement(25419433..25444234)
Genome browser
AA seq
1828 aa
AA seq
DB search
MGFHTQLIFFWCFSTQKNSLVYYGIMVLISFQNFGKLSDLCFSTVNPMADTSEDEAFEDA
SDFHKDEESCLCTSLTSQSLEDDSKENCLLTDDVPAPGDLTIQSISTHSAVLIWDPPEGI
VTFELSFFTDGEQAETRTTNSNSAEVEKLKPGTEYTFSVASVTEKDRRSSPVTVTTHTKP
VPPERIKVNHVSADSVSLSWESPDFPVGEYHVTCWQGDQLVQEMATKSNKTTFNNLLSDV
QYSIKVTSVLVNGSESKMATRYAHTKTNLMGLLVKLGLVDHFKDKLSLSTVLQISEKTIT
DKAPTSLSSLPWCFLKRLMMVNVTARSVKCVSTVDDNLDSADFDIYNDLDSLVDCMDSSI
VINPLDIVTALFLCSDGFLQQEMALKMSMCQFSVPLLLPSCDTNQPMFMVWALRDIVKKF
RPHSLGDPRGFVEERIVLSTLPMVSFVRLGECGFSKSQILNKLLSNPQQYHDTFLHHDMD
CGDSPRKISDGLVEISWYLPCGNKNIDIFPEPVAVANLRGDIRSFETQYSFLCQTSSAVF
VFFDSLDTEHKILTTQHHKAQLFLVGNAQNKNFNVNDLKLVASELNLKKANIILKVKQMN
NADFVKNLRSTITNWLKSDPSKMQLEQMSDIAHELGIRVDEDNRECQNAKINAFEITTKI
EDTSQFKESQLPLQGKIWKELAKLEKEECRLRKAGDQNIENYKSELQTQKRNLRKEQRSY
NMSGAMTCFINALSMSGLERAYFLKWMRMNLDNLSRKSLTGLRDQYKEKCQDSVVNKKEI
KELDKQISNSSLGIEHFVREMGQLYESTLTLPKTSKVRQQMVHLPDLCAKLLLDGFPLEL
VDGDASNIPLNWVRDVLLKLDHLVKPRNKILVVTVLGVQSTGKSTLLNTMFGVQFAVSSG
RCTRGAFMLLIKVDDDLRNEMDCDYLMIIDTEGLKSPELAQLDDSYEHDNELATLVVGLS
DITIINIAMENSTEMKDILQIVVHAFLRMKEVGKKPICQFVHQNVADVSAHDKNLRDRKL
LLEQLNEMTQAAAKMEGKEENQKFTDVMEYDPERGNWYIPGLWHGNPPMAPVNAGYSEAV
YDFKKTMVQVFGNCKTSGSNIKDFLEWTKSLWNAVKYENFIFSFRNSLVADAYMRLCTEY
NKWEWDFKKHMYSWLTSAETKISNFEVTRTEMDNDINDFLCQLKTKAVLELDQREKVVLN
SLTEYFKQTEGHVFLVERYREDFSSSAKCLRRDLQNSVQSKLEMAVSISKGMNKLERIKK
SHTDVMERKVLQLLEKCKTSSSKKTDPELQEIFERVWEETVSEVASHGLKRRDIVSDVHN
HLRSNLKQRGGSVNEMINKVNLSECGTQPFIVSPENFFQKVFHNVKNFFSEDNQMMAQEV
ADNLIQNCLSFVEEKCCGTSDYYETYIQEILHKIDNTLSSNRKFQKDEFEVSLKLHICGI
AAKRFQDMHNRFIHDNDPNRCLQHFKEKYFADFKDLYNERDQCKRKAEQFTTLCLQPAVE
FWIAASLGPDIVDEILMGKNALQFSTRAFFQYSLLRELLLECNFTNYERYICSYEDFVKD
WIYGRIKEHFENGNKMSQLEDKYLKTILKDILKAIQTAQKQTNSGATVKKFIQNICRELE
AKLAIPKDVLDAVMALSNAKVEPFAQSLSGFIQDLERSLKEKFLKLDTQARLQTLRMKPQ
DELFKRVFGCGKQCPFCKAPCEAGGEAHTDHCASIHRPKGLGMYRWEQSEKLTIDICSSS
VFSDIQFRCSETKYQWHPYKKYREIFPDWHIPADPSIQASDYWKYVMVKFNTQFAVHYRA
KPADIPPEWKRITKEQAENSLKESFSIK
NT seq
5487 nt
NT seq
+upstream
nt +downstream
nt
atgggcttccatacacaactgatctttttctggtgtttttctacacaaaaaaatagcttg
gtttattatggcattatggttttaatttcatttcagaattttggtaaattgtctgacctt
tgtttcagcactgtgaaccccatggctgatacctcagaagatgaggcatttgaagatgcc
agtgatttccataaagatgaagagtcatgcttatgcacatcattaacaagtcagtcatta
gaagatgacagcaaagaaaattgtctactaacagatgatgttccagctccaggtgacctg
accatacagagcatcagcacccactctgctgttcttatttgggacccacctgaggggata
gtcacctttgagctcagcttcttcaccgatggagaacaggcagagaccaggaccaccaac
tccaacagtgctgaagtggagaagttgaaacctgggacagagtacaccttcagtgttgcc
tcggtcacagagaaggatcggcggagttcgccagtcactgtgaccacacacactaaaccg
gttcctccagagagaatcaaggtgaaccatgtcagtgcagactctgtttccctcagctgg
gagtcacctgacttcccggtgggggagtaccatgtgacctgctggcagggagatcaactc
gtccaggagatggcaaccaagtccaataagactacattcaacaacctcttatcagatgtt
cagtattccataaaggtcacatctgttcttgtgaatggcagtgagagcaagatggccacc
agatatgcacacacaaagaccaatctaatgggccttctggtcaaactggggttagtggac
cacttcaaggacaagctctcactcagcactgttcttcaaatcagtgagaagaccatcacc
gataaagcacctacatctctgtcatccttgccttggtgtttcttaaagagattaatgatg
gtaaatgtgacagctagaagtgtgaaatgtgtttcaactgttgatgacaacttggacagt
gcagactttgatatttacaatgacttggacagcttggtggattgcatggactcgagcatt
gtgataaaccccttagatattgtgactgctctgtttctgtgttccgatggctttctgcag
caggagatggccttgaaaatgtctatgtgtcagttctccgtgcctttgcttctcccatct
tgtgatacaaaccagccaatgtttatggtctgggctttgcgggatattgttaagaagttc
agaccacactctctgggggatcctaggggatttgtagaagagaggattgttctttctact
ctgccaatggtatcgtttgtcaggttaggtgaatgtggcttttcaaaatcacaaatcctc
aacaagttgctcagcaaccctcagcaataccatgacaccttccttcaccatgatatggac
tgtggggacagtccacggaagatctctgacggattggtggaaattagctggtaccttcct
tgcggtaacaaaaacattgacatttttcctgagccggtggctgtggccaacttaagaggt
gacattcgctcgtttgaaacacagtactccttcttgtgtcagacatcttcagctgttttt
gtcttttttgacagtttggatacagaacacaaaatactgacaactcaacatcacaaggca
cagttgttcttggtgggcaatgctcaaaacaagaacttcaacgtgaatgacttgaagctg
gtagcctcagaactgaacttgaagaaagccaatataattcttaaagtcaaacaaatgaat
aatgcagactttgtgaaaaatctgcgttcaaccataacaaattggctgaagagtgaccca
tccaaaatgcagctggaacagatgtctgacattgcccatgagcttggcatccgtgtagat
gaggacaacagggaatgccagaatgcaaagataaacgcatttgaaataactacaaaaatt
gaggacacatcacagttcaaggagagccaactgcccttgcaagggaagatttggaaggag
ctggcaaaacttgaaaaggaagagtgtagactaagaaaagctggagatcagaatattgag
aactacaagagtgagcttcagacacaaaagaggaaccttaggaaagagcagcgtagctac
aacatgtcaggggccatgacatgtttcattaatgcattatcaatgtctggactagagagg
gcttactttttgaaatggatgagaatgaatttggataacttgtcaaggaaaagtctcaca
ggacttcgagaccaatacaaggaaaaatgccaggattcagtggtaaataaaaaagaaatc
aaagaacttgacaaacagatttccaacagctctttgggaatagagcactttgtgcgagag
atgggccagctctatgaatccacgttaaccctaccaaaaacttcgaaagtccgacaacaa
atggtgcatttgcctgacctgtgtgccaagttactgctagatggctttcctctggaactt
gtggatggggatgcctccaacataccgttgaactgggtgagggatgtgttactgaagctt
gatcatctggtaaagcccagaaacaagatccttgtggttactgtcttaggggtccagagc
actggaaagtccacactccttaacaccatgtttggggtacagtttgctgttagtagtggg
agatgtacaaggggagctttcatgctgctcataaaagtcgatgatgaccttcgtaatgag
atggattgtgattacttgatgataattgacacagagggattgaagtctccagaactggct
cagcttgatgacagctacgaacatgacaatgagttggctacgcttgtggtcggactcagt
gacatcacaataataaacatcgccatggagaactctacggaaatgaaagacattctccag
attgtggtgcatgcgtttctaaggatgaaagaggtgggaaagaaaccgatttgtcagttt
gtgcaccagaatgtggctgacgtctctgcacatgataaaaacttgagggacaggaagctc
cttctggaacaactaaatgaaatgacacaagctgcagccaaaatggagggcaaggaggag
aaccagaagttcacagacgtgatggagtatgacccagaaagaggaaactggtacattcct
ggattatggcacggaaatcctcctatggctcctgtcaacgcaggttatagtgaggctgtc
tatgatttcaagaagaccatggtccaagtgtttggaaactgtaagacgtctggaagcaac
atcaaggatttcctggagtggacaaagagtctgtggaatgctgtgaagtacgagaatttc
atattcagcttcagaaacagtttagtggcagacgcctacatgcggctatgcacggagtac
aataaatgggagtgggatttcaagaagcacatgtactcatggctcaccagcgctgaaacc
aaaatctccaactttgaggtgaccaggactgaaatggacaatgacatcaatgactttctt
tgccagttgaaaaccaaggctgtcctagaacttgaccagagggaaaaagtcgttcttaac
agtctgacagagtacttcaagcagacagagggtcatgtctttcttgtggagcgataccgt
gaggatttttccagcagtgcaaaatgtctcagaagagacttgcagaattccgtgcaaagc
aaactcgaaatggctgtttccattagtaagggcatgaacaaattagaaaggattaaaaaa
tcccacactgatgtcatggaaaggaaagtgctgcagcttcttgaaaaatgtaaaaccagc
agttcaaagaagactgatccagaactccaggaaatctttgagagggtgtgggaagaaact
gtgtctgaagtagcatcccatggattgaagagaagggacattgtgagcgatgtacacaat
cacctgaggtcaaatttgaaacagagaggaggttcagtgaatgaaatgattaacaaagtc
aatctgtcagagtgtggtacacaacctttcattgtaagtcctgagaatttttttcagaaa
gtatttcataatgttaaaaactttttctctgaagacaaccaaatgatggcccaggaagta
gcagacaatctcattcagaattgcttgtcatttgttgaagaaaaatgttgtggaacatct
gactattatgaaacctacattcaagagattctacacaagattgacaacacattatcctcc
aaccgtaagtttcaaaaggatgaatttgaagtttctctaaaactccatatttgtggaatt
gccgccaaacgttttcaggacatgcacaatcgcttcatacatgataatgatccaaatagg
tgccttcagcatttcaaagaaaagtactttgcagatttcaaagacctgtacaatgagcga
gatcagtgcaagaggaaagcagaacaatttacaacgttatgcctccaacctgctgtggag
ttttggattgcagcctctctaggtccagacatagttgatgaaatactgatgggaaagaat
gcacttcagtttagcacaagagcattttttcagtattcactcctaagagagttgctcttg
gaatgcaactttacaaattatgagagatacatctgctcttatgaggattttgtgaaagac
tggatatatggccgcatcaaggaacactttgaaaatggaaataagatgtctcaactggag
gacaagtacctcaagacaatcttaaaagatatcctcaaggctattcagactgcacagaag
cagacaaattcaggggccaccgttaagaaattcattcagaacatttgtagagaacttgaa
gcaaaactggccattcccaaggatgttctagatgccgtcatggctcttagcaatgcaaag
gtggaaccatttgcccagtcgctctcagggttcatccaagaccttgaacgatcactgaaa
gagaagttcctaaagctagatactcaagcaagactccaaactctcaggatgaaaccacag
gatgagctgttcaaacgagtcttcggatgtggcaagcagtgtccattctgcaaagcaccc
tgtgaggctggtggggaggctcacacagatcactgtgcttcaatccacaggcctaagggt
ctgggtatgtaccgatgggaacaaagtgagaaactaactattgatatttgctcctcatct
gtgttcagtgacattcagttcagatgctcggagacaaagtatcagtggcatccttataag
aaatatcgtgagattttccctgattggcacattccagcagaccccagtattcaagcctca
gattactggaagtatgtcatggtaaaattcaacacacagtttgcagttcactacagggca
aagccagctgatattcctcctgaatggaaaagaatcaccaaagaacaggctgagaatagc
ttgaaggaatcattcagtatcaagtaa
DBGET
integrated database retrieval system
