Alosa sapidissima (American shad): 121692635
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Entry
121692635 CDS
T11137
Symbol
ifih1
Name
(RefSeq) interferon-induced helicase C domain-containing protein 1 isoform X1
KO
K12647
interferon-induced helicase C domain-containing protein 1 [EC:
5.6.2.6
]
Organism
asad Alosa sapidissima (American shad)
Pathway
asad04622
RIG-I-like receptor signaling pathway
asad05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
asad00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
121692635 (ifih1)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
121692635 (ifih1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
asad04054
]
121692635 (ifih1)
Enzymes [BR:
asad01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
121692635 (ifih1)
Pattern recognition receptors [BR:
asad04054
]
Cytoplasmic pattern recognition receptors
RIG-I-like receptors
121692635 (ifih1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CARD_2
RIG-I_C-RD
RIG-I_C
DEAD
ResIII
Helicase_C
SWI2_SNF2
SNF2-rel_dom
CARD
DUF3638
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
121692635
NCBI-ProteinID:
XP_041927325
LinkDB
All DBs
Position
2:complement(25947798..25964671)
Genome browser
AA seq
1013 aa
AA seq
DB search
MSSSCEEENIGLIEFFRNRLRRLILVDPLLDRLHFIEEDDKESIRAKLRNEGDLVAADQL
INIILKGPRTEGWFRQLINGLETVGCKNAANYINNSPPTPSLEAENDNCVRMIQLLQPTL
ETMKTRDVCISCHTMDILTDEDRENILAETDNYGGQRGARLLLKRVVRNEAGWYSTLLKA
LRKTDHFDLVKELQGEDLVDEEDSVSGKGDTPQALKDDKELADKHLKRNQAPLSQVEAPA
SFPESSRDSILDSFSSGSSMDLYSNFHQNETSHANESMDCSSTDGGDGGAVVETEAAMGA
TGGPDEGDIVLRDYQMEVARPALEGQNIIICLPTGSGKTRVAVYITKEHLDSRRRKEQPG
KVVVLVNKVPLVEQHYSTEFGRFLRHQYKVERVSGDSQLKISFPEVVRKNDIIICTAQIL
ENSFANAKKKDEDGISLSDITLMVIDECHHTQKGGVYNHIMIRYLRQKHRNALLLKEQKE
PQPIPQILGLTASPGVGGAKTQQKAEEHILKICANLDAVTIKTKNLAEESKAPFKRIASA
DKRKEDPFGDVIKGVMEQIHAHVGLNSLCEFGTQNYEQWVVLTEQNAAKDENTKVRVCAE
HLRQYNEALHQSNTIRMSDAFSFLDKYYNEERKKKYDPEEGESINITDTERFLFTLFKDK
KEKLRELTKQAKYENNSLAKLREVILKEFTTRTEARGIIFTRTRLSAIALSQWIQENPKF
EECGVRASHLIGGGDQSLVKPMTSAEQKDVLKKFRQGEINLLIATTVAEEGLDIKECNIV
IRYCLVTNEIAMIQARGRGRAEDSSYTLVETEGSGVAERESVNEYREKMMSKGIARVVKL
PKAEYDKKIKDFQLQVIMEKRVHAKKKKQKSMQQEEPSKVSFSCRHCNKAVCSGESIKVI
ENMHHVNVTPRFRDLFTVQENASLQERLLDYEANGVIACKDCGHKWGSMMLYKSIDVPCL
HIKNFVVTYNSKNKVFSKWSELSIRFPAFDYAAHAVDLVDENLEEEEEEEDTM
NT seq
3042 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcaagctgtgaagaagaaaacattggcctcattgaatttttcagaaatcgatta
cgaagactcattctcgtcgatcctctgctggatcgtttacattttatagaagaggatgat
aaagaatcgatcagagctaagttacggaacgagggcgacttagtagctgcagaccaactc
ataaacattattttaaaaggtccacggacagaaggttggtttaggcaactaataaacggt
ctagaaacagtaggctgtaagaatgcagctaattatatcaacaacagtccccctactccg
tctttggaggccgaaaatgacaactgtgtcaggatgatacaacttcttcagccgacactg
gaaacaatgaagacacgagatgtctgcatcagctgtcacacaatggacattttaactgac
gaggatcgcgagaatattttagcagagacggacaactacggaggccaaaggggtgctcgt
ttactacttaaaagagttgtaaggaatgaagctgggtggtattccacattgctcaaagct
ttgcgcaagaccgaccacttcgacttggtcaaagaactccaaggagaagatctggtggat
gaggaagattctgtgtcaggtaaaggggacacaccgcaggctcttaaagatgacaaggaa
cttgctgacaaacacctcaaaaggaaccaggctccgctttcccaagttgaggcccctgcc
agctttccggaatcatcccgtgatagtatattagattccttctcaagtggcagttcaatg
gacctctatagtaactttcatcagaatgagactagtcatgccaatgaaagcatggattgc
tcctcaacagacggtggcgatgggggggctgtggttgagactgaggcggcgatgggcgca
acgggaggcccagacgagggggacatcgttctgagggactatcagatggaggtggcccgg
ccggccctcgaaggccagaacatcatcatctgcctgccgacaggaagtgggaagaccaga
gtggccgtctacatcacaaaggaacatctggacagcagaaggaggaaggagcagccgggg
aaggttgtggtgctggtgaataaggttccactggtagagcagcattactccactgagttt
gggaggttcttacggcaccagtacaaagtggaacgggtgagcggagactctcagctgaaa
atctctttcccggaggtcgtcagaaagaatgacatcatcatctgcacggcgcaaatcctg
gaaaactcctttgccaacgccaaaaaaaaagacgaggacgggatctcgttgtcagacatc
accctcatggtgatagatgagtgccaccacacgcagaaggggggtgtctacaaccacatc
atgatccgctacctgaggcagaagcaccgcaacgccctactgctgaaggagcagaaggag
ccgcagcccatccctcagatcttggggctgaccgcctcgcctggcgtgggaggtgccaag
acccagcagaaggccgaggagcacatactcaagatctgtgctaatctggatgctgttact
ataaagacgaagaacttagcagaggaatctaaagcccctttcaaaaggattgcaagtgct
gacaagaggaaagaggatcccttcggagatgtcatcaagggtgtcatggagcagattcac
gctcatgtcgggctcaactcgctgtgtgagttcggtacccagaactatgagcagtgggtg
gtcctgacagagcagaatgccgctaaagacgaaaacacgaaagtgagagtgtgcgccgaa
cacctccgccagtacaacgaggccctgcaccagagcaacaccatccgaatgtcagatgct
ttcagcttcctcgacaagtactacaacgaggagaggaagaagaagtacgaccccgaggag
ggcgagtccatcaacatcaccgacactgaaagattcctgttcacgttgttcaaagacaag
aaggaaaagctgcgcgagctgaccaagcaggccaaatacgagaacaacagcctggccaag
ctgcgcgaggtcatcctgaaggagttcaccacccggacggaggcccgcggcatcatcttc
acccgcacgcgactcagcgccatcgccctcagccagtggatccaggagaaccccaagttc
gaggaatgcggagtgcgggccagccatctgataggaggtggagaccagagcctcgtgaag
cccatgacctcggccgagcagaaggatgtgctgaaaaagtttcgccagggggagataaat
ctgctcattgcaacaacggttgcagaggagggtctggatataaaggagtgtaacatagtt
atccgttactgcctggtcaccaatgagatcgccatgattcaagcgcgaggccgagggaga
gcggaggacagcagctacactctggtggagacggaggggtcgggagtggccgagcgtgaa
agcgttaacgagtaccgggagaagatgatgagcaaaggcatcgccagagtggtgaagctg
cccaaggcagagtacgacaagaagataaaagacttccagctccaggtcatcatggagaag
agagtgcatgccaagaagaagaagcagaagagcatgcagcaggaagaaccctccaaagtc
agcttcagttgcaggcactgtaacaaggccgtctgctcaggagagagcatcaaagtcatt
gagaacatgcaccatgtcaacgtcacccctcgatttcgtgatctgttcacagtgcaagaa
aatgcttcacttcaagagagactgctggactatgaggccaatggagttatagcatgcaaa
gactgtgggcataaatgggggtccatgatgttgtacaaatcgattgacgtcccctgtctt
cacatcaagaactttgtagtgacgtacaacagcaaaaacaaggtcttcagcaagtggagt
gaactttccattcggtttccagcctttgactacgctgcgcatgcagtggacttggtggat
gagaacctggaggaggaggaggaggaggaggacactatgtga
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