Alosa sapidissima (American shad): 121692694
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Entry
121692694 CDS
T11137
Symbol
scfd1
Name
(RefSeq) sec1 family domain-containing protein 1
KO
K19998
sec1 family domain-containing protein 1
Organism
asad Alosa sapidissima (American shad)
Brite
KEGG Orthology (KO) [BR:
asad00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
asad04131
]
121692694 (scfd1)
Membrane trafficking [BR:
asad04131
]
SNARE
SNARE associated proteins
Syntaxin-binding proteins
121692694 (scfd1)
Endoplasmic reticulum (ER) - Golgi transport
Others
Others
121692694 (scfd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec1
DUF3882
PS_pyruv_trans
Peptidase_S66
Motif
Other DBs
NCBI-GeneID:
121692694
NCBI-ProteinID:
XP_041927439
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Position
19:15900217..15922460
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AA seq
632 aa
AA seq
DB search
MAASVREKQTAALKRMLNLNAPLLKNTASEPVWKVLVYDRFGQDIISPLLSVKELRDMGV
TLHLLLHSDRDPIPDVPAVYFVMPTEENIDRICQDLRNQLYEAYYLNFISAISRSKLEDI
ASAALSANAVTQITKVFDQYLNFITLEDDMFILCNQNKESISYHAINKPDIMDTDMEIIM
DTIVDSLFCFFVTLGAVPIIRCPRGNAAEMVAVKLDKKLRENLRDARNSLFTGDNMGSGQ
FSFQRPLFVLVDRNLDLATPLHHTWTYQALIHDVLDFHLNRVNIEEASSTEASPAGARPK
KKNKRCYDLTSADKFWQKHKGSPFPEVAESVQEELDTYRAQEDEVKRLKSIMGLEGEDEG
AISMLSDNTAKLTSAVSSLPELLEKKRLIDLHTNVATAVLDHIKSRKLDVYFEYEEKLMS
KSTLDKSLLDIISDPDAGTPEDKMRLFLIFYITAQMPPSEADVEQYKKALLDAGCDLSPL
NYIKQWKAFTKMAAAPANYGNSGVKPMGLFSRVMNTGSQFVMEGVKNLVLKQHNLPVTRI
LDNLMEIKSNPETDDYRYFDPKMLRGSESSIPRNKNPFQEAIVFVVGGGNYIEYQNLVDY
TKARQGKRIFYGCSELFNAGQFLKQLSQLGQK
NT seq
1899 nt
NT seq
+upstream
nt +downstream
nt
atggctgcctccgtacgggagaaacagacagctgccttaaagcggatgctaaacctaaac
gcccctctcctgaaaaacactgcctccgaaccagtatggaaggttttggtctacgaccgc
tttgggcaagacatcatctctccgttgctgtctgtgaaagagctgagagacatgggagta
accctacacctgctgctgcactcagatcgtgacccaatcccagatgttcctgccgtctac
ttcgtcatgcccacagaggagaacattgacaggatatgccaagacctacggaatcagctc
tatgaggcctactacctgaacttcatctcggccatctcccggagtaagctggaggacata
gccagtgctgccctgtccgcaaacgccgtcacccagataaccaaggtatttgatcagtat
ttaaacttcatcaccctggaagatgacatgtttatcctgtgcaatcagaacaaggagtcc
atctcctatcatgcaattaacaagcctgacataatggacacagacatggagatcataatg
gacacaatagtggacagtctcttctgcttttttgtgacactaggtgcggtgcctatcatc
cgatgcccacgaggaaatgcagctgaaatggtagctgtgaaactggataagaagctgcgg
gagaatctgcgagatgccagaaacagcctgttcaccggagacaacatgggctccggccag
ttcagtttccagaggcccttgttcgtcctggtggaccgtaacctggatctggccacccca
ctccatcacacatggacctaccaagccctcatccacgacgtcctggacttccacctgaac
agagtgaacattgaagaggcgtcgagcacagaggcatcccccgccggggcccgacccaaa
aagaagaacaagaggtgttacgacctcacgtccgcagacaagttctggcagaaacacaag
ggcagtccattcccggaggttgcagagtcggtacaggaggagctggacacgtaccgggcc
caggaggatgaggtcaagaggctcaagagcatcatggggctggaaggagaggacgagggg
gccatcagcatgctctcggacaacacggccaaactcacctccgccgtcagttctctccca
gagctcctggagaagaagaggttaatcgacctgcacaccaacgttgccacagcagtactt
gaccacatcaagtcgcgtaaactggacgtttactttgagtacgaggagaagctgatgagc
aaatcgacattggacaagtccctgttggacatcatcagcgaccctgatgcgggaacgcca
gaggataaaatgaggctcttcctgatcttctacatcaccgcacagatgcccccatcagag
gcggacgtggagcagtacaagaaggccctgctggacgctggctgtgacctctcgcctctc
aactatatcaagcagtggaaagccttcaccaagatggctgccgctccagctaactatggg
aacagtggagtgaagcctatgggtctcttctctcgtgtgatgaacacaggctcccagttt
gtcatggagggagtgaagaacctggtgctgaagcagcataatcttccggtcactcgaatc
ctggacaacctcatggaaattaagtctaacccggagacagacgactaccgatacttcgac
cccaagatgctgaggggcagcgagagttccattccaagaaacaagaacccatttcaggag
gctattgtctttgtggttggcggtggcaattacattgagtatcaaaatcttgttgactac
acaaaggccagacagggcaagcgaatcttctatggctgcagtgagctcttcaacgccggg
caattcctcaaacagctctctcagctcggacagaaatga
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