KEGG   Alosa sapidissima (American shad): 121692812
Entry
121692812         CDS       T11137                                 
Symbol
tdp1
Name
(RefSeq) tyrosyl-DNA phosphodiesterase 1 isoform X1
  KO
K10862  tyrosyl-DNA phosphodiesterase 1 [EC:3.1.4.-]
Organism
asad  Alosa sapidissima (American shad)
Pathway
asad03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:asad00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    121692812 (tdp1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:asad03400]
    121692812 (tdp1)
DNA repair and recombination proteins [BR:asad03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Other BER factors
     121692812 (tdp1)
SSDB
Motif
Pfam: Tyr-DNA_phospho RMMBL
Other DBs
NCBI-GeneID: 121692812
NCBI-ProteinID: XP_041927659
LinkDB
Position
19:complement(27130077..27174357)
AA seq 692 aa
MSIVLHVKVKVHTFPSLLLETHYSRRQKMSQQSAHGRWTVSSSDDDDDVPPHSSNIKTER
VETSEQDTIKTEPVTRKIACVFQSNTDTPDVKSEPSLAVKKEPKPSALVMGSEARQTAQA
NQQQPVKYENNNLSPAVKRKRETEEAGWALSSSDDDNDNNPKDRVIPSGQKIQPKTQSSP
KRVKKEVARPPSPHGRTYYIDEPADYFETSINEEAETYRFYLNKVVGLDKKYNTGAIHIR
EILSPMFGTLKESVQFNYCFDIPWMVEQYPPEFRDKPVLIVHGEKRESKARLIQQAQPYA
HVRFCQVGTINQSQPYAHVRFCQAKLDIAFGTHHTKMMLLWYVEGFRVVILTSNMIRADW
YQKTQGMWISPLYPVLPEGRPETAGESPTFFKRDLIEYLQAYRAPELSEWIQRIREHDLS
DTSVYLIGSTPGRYVGADMEKWGHLRLRKLLREHTKPVPNEEAWPVIGQFSSIGSMGLDK
TKWLAAEFQRTLTTLGKGGKSVGPEPQMLLVYPSVDNVRTSLEGYPAGGSLPYSIQTAQR
QLWLHSYFQLSVCVCVCVCVCVSRWGAETTGRSHAMPHIKTYMRVSPDFTQLAWFLVTSS
NLSKAAWGGLEKNNTQVMVRSYELGVLFLPSAFNLSTFRVQKNVFPADEGSSGFPVPFDL
PPQRYSSKDQPWIWNIPYTQSPDTHGNVWVPS
NT seq 2079 nt   +upstreamnt  +downstreamnt
atgagcattgtcctgcatgtgaaggtgaaggtgcatacttttcctagccttctactagaa
actcactattcccgccgccaaaagatgtctcagcagagtgcacatggcaggtggactgtt
tccagtagtgatgatgacgatgatgtacctccccactcaagcaacatcaagacagaaaga
gtggaaacgtctgaacaagacacaataaagactgaacctgtgacaaggaagattgcttgt
gtcttccagtcaaacacagacacgcctgatgtcaaatctgaaccgtccttggcggtgaag
aaggaaccgaaaccctcagccctggtcatgggctcggaggctcggcagactgctcaagcc
aaccagcagcagccggtgaagtacgagaacaacaacctctcgcctgccgtcaagaggaag
agggagacggaggaggctggctgggccttgtcaagcagcgatgacgacaatgacaacaac
cccaaggacagggtcatcccgtctggacagaagatacagcccaaaacacagtccagcccc
aaacgggtgaagaaggaggtcgctaggcctcccagcccccacggtcgtacgtactacatc
gacgagcctgcggactacttcgagaccagcatcaatgaggaggcggagacgtaccgcttc
tatctgaacaaagtggtggggctggacaagaagtacaacactggagccatccacatcaga
gaaattctctcccccatgtttggaactcttaaagaatctgtgcagttcaactactgcttt
gatatcccctggatggtggaacagtaccctccggaattcagggataagcccgtcttgatt
gttcatggcgagaagcgcgagtccaaagcccgtttaatccagcaggcacagccgtatgcc
cacgtccgcttctgccaggttggtactattaaccaatcacagccgtatgcccacgtccgc
ttctgccaggctaaactggatattgcctttggcacacaccacacgaagatgatgctgctc
tggtatgtggaaggcttccgggtagtcatcctgacctctaacatgatccgagccgactgg
taccagaagactcaggggatgtggataagccctctgtaccccgtcttgcccgagggaagg
cccgagactgcaggggagtccccgacgttcttcaagagggacttgattgagtatctgcag
gcctacagggccccggagctgagcgagtggatccaacgcatcagagaacatgacctctca
gacaccagtgtatacctgattggctcaacccctgggcgttatgtgggagctgatatggag
aagtggggccacctccgccttaggaagctgttgcgtgagcacacaaagccagtgcctaac
gaggaggcctggcccgtgattggccagttctccagcatcggctccatgggattggacaag
accaagtggctagccgcagagttccagcgcacgttaactacactcggcaaaggagggaaa
tcagtcggtccagaaccacaaatgctactggtgtacccctcagtggacaacgtgaggaca
agtctagagggatacccagctggaggctccctgccctacagcatccaaacagcccaacgg
cagctttggcttcactcctacttccagttaagtgtgtgtgtgtgtgtgtgtgtgtgtgtg
tgtgtcagtcgctggggggcagagacaacagggcgaagtcatgcgatgccccacatcaag
acctacatgagggtatccccagacttcacacagctcgcctggttcctcgtcacaagttcc
aacctgtccaaagcagcctggggcggcctggagaagaacaacacgcaggtgatggtgcgc
tcctatgagctaggagtgctcttcctgccctccgccttcaacttgagcacgttccgcgtg
cagaagaacgtgttcccagctgatgaaggttcctcggggttcccagtgccttttgacctg
ccaccccaacgttactccagcaaagatcagccttggatctggaacattccgtacacccaa
tctccagacacccacggcaacgtatgggttccgtcctga

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