Alosa sapidissima (American shad): 121692826
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Entry
121692826 CDS
T11137
Name
(RefSeq) hypoxia-inducible factor 1-alpha-like isoform X1
KO
K08268
hypoxia-inducible factor 1 alpha
Organism
asad Alosa sapidissima (American shad)
Pathway
asad04137
Mitophagy - animal
asad04140
Autophagy - animal
asad04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
asad00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
121692826
04137 Mitophagy - animal
121692826
04148 Efferocytosis
121692826
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
asad03000
]
121692826
Transcription factors [BR:
asad03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
121692826
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
bHLH_HIF1A
PAS_11
PAS_3
HIF-1a_CTAD
HIF-1
PAS
PAS_9
PAS_4
TMEM51
HLH
Thymidylate_kin
DsbC_N
Motif
Other DBs
NCBI-GeneID:
121692826
NCBI-ProteinID:
XP_041927690
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Position
19:17595072..17613737
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AA seq
750 aa
AA seq
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MDTGATPPKKRVNSERRKEKSRDAARCRRGKESEVFYELANELPLPHSISSNLDKASVMR
LTISYLRLRRVLNTAVKVEQESELDIQMNSMFLKALDGFLMVLSDDGDMVYLSENVNKCL
GLPQIDLTGNSIFDFTHPCDHDEIRETLTHKTASSKKGKEQDAERSFLLRMKCTLTSRGR
TVNVKSATWKVLRCTGQVHMCDLVVGTTAGVSGKASATVPSLVLICQPIPHPANIEVPLD
SRTFLSRHTLDMRFTYCDERITELLGYESDDLLNRSVYEYYHALDSDHLTKTHHSLFAKG
QVCTGQYRMLAKRGGFVWVETQATVIYNSKNSQPQCVVCVNYVLSGVEMQELVLSMEQTC
VHRVKQERDEEASCLAQCPLQVAVKKEQAHETQQEEVEVEEKAMKLETPSSVEVLREESE
ALTLLAPPITGDAVITLDLSTDSDITVLKDIQLFSDVMLPSSSSLLAPPTSGLSEDTHSP
FPESSTPDCSSTESSAGPCSPLEFSDLSTDFKTDLVERLFSMEMGADTPFVTQQSMDDLD
LEMLAPYIPMDDDFQLRTLSPTNSLSLSPLKLQSQAPTLPPSQQASTSPSEMPLAGIVSQ
VEAAKTPIPLASYVFQRSPPLATKSTPQPVSVRNISDKANASGNVPLKRKIETVPTFSQA
VGLVVLDMDQPSSKIQKLQLAGAQGLNNTTILLLPSDLASRLLARSSKGESNLGSLPQLT
RDDCEVNVPVNARQHLLQGEELLRALDQLI
NT seq
2253 nt
NT seq
+upstream
nt +downstream
nt
atggacactggtgcaacacctccgaagaaaagggtgaactcggagcggcgtaaagagaag
tcgcgtgatgcggcccgatgtcggcgaggtaaggagtcggaggtgttctacgagctggcc
aatgagctgccactcccacacagcatcagctccaacctggacaaggcctcggtcatgagg
ctcaccatcagctacctccgcctccgcagagtcctcaatactgctgtaaaagtggagcag
gagtctgagctggacattcagatgaacagcatgttcttgaaagctctggacggtttcctg
atggttctgtctgatgatggagacatggtctacctgtctgaaaatgtcaacaagtgtctg
gggctcccccagattgatctgactggcaacagcatctttgacttcacacacccctgtgac
catgacgagatcagagagacgctcacccacaaaacagcttcctctaagaaagggaaggag
caggatgcagagaggagttttctgctgaggatgaaatgcactctgaccagtagggggcgc
actgtcaacgtcaaatcagctacatggaaggtcctgcgctgcacggggcaagtgcacatg
tgtgaccttgtggtggggaccactgcgggtgtgagtgggaaggcctccgccaccgtcccc
tccctggtgctgatctgccagcccatccctcaccccgctaacatcgaggtcccgctggac
tccaggaccttcctcagccgccacacactggacatgaggttcacctactgcgacgaacgt
attactgaattgttgggctatgagtcagatgacctgctgaaccgctctgtatatgagtac
tatcatgccctggactcagaccatctgaccaagacacaccacagcttgtttgctaaaggt
caggtgtgcacaggtcagtacaggatgctggctaagaggggaggctttgtgtgggtcgag
actcaggccactgtcatctacaacagcaagaactctcagccacagtgtgtggtgtgtgtc
aactatgtactcagtggtgtggagatgcaggagctggtgctgtccatggagcagacgtgt
gtccaccgcgtgaagcaggagcgggacgaggaggccagctgtttggcacagtgccccctg
caggtggccgtgaagaaggagcaggcccacgagacgcaacaggaggaggtggaggtggag
gagaaggcaatgaagctggagactccgtcgtctgtggaggtgctgagggaggagtctgag
gcactgaccctgctagctccaccaatcacaggagacgcagtcatcacactggatctcagc
acagactcggacatcactgtcctgaaggacattcagctcttcagtgacgtgatgctgccc
tcctccagctctctgctggctccaccaacctctggcctgtcggaggacacgcactccccc
ttcccagaatcctccactccagactgttccagcactgagagctctgcggggccttgcagt
cctctggagttttctgacctgagcacagacttcaagacagacctggtggagcgcctgttc
tccatggagatgggcgccgatactcctttcgtaacacagcagtccatggatgatctggat
ctggagatgttggccccatacattcctatggatgatgacttccagctgcgcacactctcc
cccaccaactccctctccctcagcccacttaaactccagtctcaggctccaactcttcca
cccagccagcaggcctccaccagccccagcgagatgccccttgctgggatagttagccag
gtggaggccgccaagactccaattccactggcctcttatgtcttccagagatcgccccca
ctggctaccaagagtactccccaaccagtcagtgtcagaaacatcagcgataaggccaac
gccagtggcaatgtcccactgaagaggaaaatagagactgtccccactttctcacaggct
gtcggactggtggtgttagacatggatcagccaagcagtaagatccagaagctacagctg
gctggagcgcagggtctcaacaacacaactatactgttactgccttctgacctggccagt
cgattgctggctcgttcctctaagggcgagtcaaatcttgggtcactcccccagctgact
cgtgatgactgcgaggtcaacgtcccggtcaatgcccggcaacacttgctgcaaggagag
gagcttctgcgagcgctggaccagcttatctga
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