KEGG   Alosa sapidissima (American shad): 121693245
Entry
121693245         CDS       T11137                                 
Symbol
cdc5l
Name
(RefSeq) cell division cycle 5-like protein
  KO
K12860  pre-mRNA-splicing factor CDC5/CEF1
Organism
asad  Alosa sapidissima (American shad)
Pathway
asad03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:asad00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    121693245 (cdc5l)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:asad03041]
    121693245 (cdc5l)
   03400 DNA repair and recombination proteins [BR:asad03400]
    121693245 (cdc5l)
Spliceosome [BR:asad03041]
 Complex B
  Other components
   Prp19 complex
    121693245 (cdc5l)
 Complex C
   Prp19-CDC5 complex
    121693245 (cdc5l)
DNA repair and recombination proteins [BR:asad03400]
 Eukaryotic type
  Other factors with a suspected DNA repair function
   PSO4 complex
    121693245 (cdc5l)
SSDB
Motif
Pfam: Myb_Cef Myb_DNA-binding Myb_DNA-bind_6 TPR_HPS5_insect Rap1_C Glyco_hydro_52
Other DBs
NCBI-GeneID: 121693245
NCBI-ProteinID: XP_041928482
LinkDB
Position
19:complement(12486244..12502028)
AA seq 804 aa
MPRIMIKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKK
TEWSREEEEKLLHLAKLMPTQWRTIAPIIGRTAAQCLEHYEFLLDKAAQRDNEEDAGDDP
RKLKPGEIDPNPETKPARPDPVDMDEDELEMLSEARARLANTQGKKAKRKAREKQLEEAR
RLAALQKRRELRAAGIDIQKKRKKKRGVDYNAEIPFEKKPALGFYDTSMENYDNLEPDFK
RLRQQHLDGELRSEREDRERKRDKQKIKKKKESDLPSAILQTSGVSEFTKKRSKLVLPAP
QISDGELEEVVKLGQASEIARQTAEESGITNSASSALLSEYNVTNNTMALRTPRTPAAQD
KILQEAQNLMALTNVDTPLKGGLNTPLHESDFSGVTPQRQVVQTPNTVLSTPFRTPSHGA
EGMTPHSGMTPKPTVAVTPGRTPLRDKLNINTEDGSVDYTDPAYNKHLQRETREQLKMGL
MSLPLPKNDFEIVLPENAERELEEEREMDESFVEDASEIELRKKAVRDAEREKELKQRHM
AVQRELPRPSEVNETILRPQNVDPPLTELQLAEELIKKEMITMVHFDSLHHPYVEALSKK
AKGVSSSSNNAEHIAFLEKNPYNKIGEEDLKKASELLTQEMEVVKSGMGHGDLSIDAYNQ
VWEECYSQVLYLPGQSRYTRANLASKKDRIESLEKRLEINRGHMTTEAKRAAKMEKKMKI
LLGGYQSRAMGLVKQLGDLWDQVEQAHMELRTFGELKKQEDLAIPRRQEALREDVQRQQE
REKELQQRFGDLLLEKETLVGEKF
NT seq 2415 nt   +upstreamnt  +downstreamnt
atgccgcgtattatgatcaagggtggtgtttggcgaaacaccgaggatgagattcttaaa
gcagctgttatgaaatatggcaaaaaccagtggtctcgaattgcatctcttctgcacaga
aaatcggccaaacagtgcaaggctagatggtatgagtggctggaccccagcatcaaaaag
acagaatggtccagagaggaagaagagaagctgctccatctggccaagctgatgcccacc
caatggagaaccatcgcccccatcatcggccgcacggctgcccagtgtctggagcactac
gagttcctgctagataaagcagctcaaagagacaatgaggaggatgcaggagatgacccc
cgcaagcttaaaccgggagagattgacccaaatcctgagaccaagcccgccaggcccgac
cctgtggacatggacgaagatgagctggagatgctgtcggaggccagggctcgtctggcc
aacactcaaggcaaaaaggccaagaggaaagcccgagagaagcagctggaggaggccaga
cggctagctgcccttcagaagcgcagggagttgcgggcggcaggcatcgacatccagaag
aagaggaagaagaagagaggcgtggactacaacgccgagattcccttcgagaagaagccg
gccctgggcttctacgacacgtccatggagaactacgacaacctggagcccgacttcaag
aggctccgtcagcagcacctggatggggagctgaggagtgagagagaagacagagagcgc
aaaagggacaagcagaagatcaagaagaagaaggagtctgacctcccgtctgccatcctg
cagaccagcggcgtgtccgagttcaccaagaaaaggagcaagctggtcctgcccgcccct
cagatttctgacggcgagctggaggaagtggttaaactgggccaggccagtgagatcgcc
cgccagacggccgaggagtccggcatcaccaactcggcctccagcgccctgctgtccgag
tacaacgtcaccaacaacaccatggcgctgcgcactcccagaacccccgctgcccaggac
aaaatcctccaggaggctcagaatctgatggcgctaacgaacgtggacactcctctgaaa
ggaggcctgaacacgcccctccacgagagcgacttctccggcgtcacccctcagagacag
gtggtgcagacccccaacactgtcctcagcacccccttcaggaccccgagtcacggcgca
gaggggatgaccccccacagcggcatgacccccaaacccactgtggctgtaacccccgga
cgcaccccgctgcgggacaaactcaacatcaacacagaggacggttcggtcgactacact
gacccggcctacaacaaacatctgcaacgagagacccgggagcagctgaagatgggcctg
atgtcgctgccactcccaaagaacgacttcgagatcgtactgcccgagaacgcggagcgg
gagctggaggaggagcgcgagatggacgagagttttgtggaggacgcctccgagattgaa
ttacgcaaaaaggcggtgcgcgacgcggagcgggaaaaggagctgaagcagagacacatg
gccgtgcagagagagctgccccgtccttcagaggtaaacgagaccatcctgaggccgcag
aacgtggatcctcctcttacagagcttcagctggccgaggagctcatcaagaaggagatg
atcaccatggtccacttcgacagcctgcaccacccctacgtcgaggccctcagcaagaag
gccaagggtgtgagctccagctccaacaacgcagagcacatcgccttcctggagaagaac
ccctacaacaagataggagaggaggacctcaaaaaggcctcagagctcctgacgcaggag
atggaggtggtgaagtcgggcatgggccacggtgacctgtccatagacgcctacaaccag
gtgtgggaggagtgctacagccaggtgctttacctgcccggccagagccgctacaccagg
gccaacctggccagcaagaaggatcgtatcgaatccctggagaagaggttggagatcaac
cgcggtcacatgaccacggaggccaagcgagcggccaagatggagaagaagatgaagatc
ctgctgggcggctaccagtcgcgcgccatgggcctggtcaagcagctgggtgacctgtgg
gaccaggtggagcaggcgcacatggagcttcgcacctttggggaacttaagaagcaggag
gacctggccatcccacgccgccaagaggcgctgagggaggacgttcagagacagcaggag
cgtgagaaggagctccagcagaggtttggagacctgctcctggagaaggagacgctggtc
ggcgagaagttttaa

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