Alosa sapidissima (American shad): 121693546
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Entry
121693546 CDS
T11137
Name
(RefSeq) AT-rich interactive domain-containing protein 1B-like isoform X1
KO
K11653
AT-rich interactive domain-containing protein 1
Organism
asad Alosa sapidissima (American shad)
Pathway
asad03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
asad00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
121693546
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
asad03000
]
121693546
03021 Transcription machinery [BR:
asad03021
]
121693546
03036 Chromosome and associated proteins [BR:
asad03036
]
121693546
Transcription factors [BR:
asad03000
]
Eukaryotic type
Helix-turn-helix
ARID
121693546
Transcription machinery [BR:
asad03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
121693546
Chromosome and associated proteins [BR:
asad03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
121693546
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
121693546
NCBI-ProteinID:
XP_041928997
LinkDB
All DBs
Position
19:complement(4914505..5063124)
Genome browser
AA seq
2368 aa
AA seq
DB search
MAAQVASAPAASNSKNKNVSGGLSQELNSGKSGGTTQGSGAMHGAGDGTTTLNNVDHRLP
TELNMTNRTCTPANSNSDKPKESGNITTSGSSSSNSTTSPNMETGLISNHKLKGIAGDLP
SSLNRAPQQTQFNQFSHHQRQLQSNNINKNQIMTPGDNDNQQHGGKENVLGRHVEHQQML
NKGGEDQPCKPDQMGSRYEHANFGPTNSNNHAHNPSGKSGVSEFNNYYGNSRAGPCFDQH
GGQQSHGIGIMHSSTNNNVENSHESYHNTQYNHYPGYRQGYGSAGYGMMGGSRQGNNMLM
GPSSNSSGQSKGLASASSSGGNIGSFQRFPGQSQHPSGATPTLNQLLTSPSPMMRGYGGG
YPDYSSSAVPQAGMGMSKEISSQYGSSAHAWGGQRNHPGMSPGNGQSLNRPQVGSMDFMV
MKRSQLYGMGGSNPYSQQQQGGPYPSQPYVSPASHRYPMGMQGRGQLGMGGMPYPQQQQV
PPQYGQQGMAAYCQQGQPPYFNQSQQQQQQQQQQHQSGTPAQPVYLPPRPPPQQEVSQEA
YGNSRVGGSNGGSISTSQPVGNSGKNNHEDVGPMHHDRPSSLPDLSGSIDDLPTGTEAGL
SSVVSATSGGSGSGSGSGSGSGSGSSQGEQSNPARSPFSPHASPRLPGVRSGPSPSPVGS
PAGSSQSRSGPISPASAPGSQNAPQTPGSMSDVASHPTGNQSQERGFMSNMHRNQSVSQF
GAQQSGAPMSPHRSPVGQMHPGVGSYQHAGSNTSGPYGHQSGQYGPQGNYSRPSNYSGAP
NASYSGPGPGMNNNSLGMNASSPMHGQGPGQPMAMGRSPGAGSRPYAGNMTSMAPTSPNM
PQSAGPGMGPPMGSVNRKAQEAATAAMQAAASTAQGRRSPFPRPPIYTNQGHPGPGPRQP
PALIPSPHAPHGVHTPRAAHHSSHATQQSEPYGQGSFSALNQMSGMGTGAPYGQPYANAS
GMMTSQAPTHTTPTSVLHSSGCCLPGAGGVSGEGVMGAEAKQKGEGKEEPPTTEPPKPKD
GFNSQCLSQPPTPSPLAPSPASLSSCHGDDSDSISSPVWPKTPSSPKSSSAPMAGDKVSR
LYELGGEPERRPWLDRYLSFMEERGTPVPHLPVIGKKTLDLYRLYTAVKEIGGLAMMNKN
KKWRELSSTLSVGTSSTSASSLKKHYIQFLFAYECNVERGEEPPLDGCPAGDKKQPPRPQ
PPSPANSGSLQGPHTPQSTGSSSMAETPGDLKRPTPANTPQGHVPPAPVGRNNSISIQDP
FSEASDPSLPKRNSLPPSGPYQPEPMMRMQFEANKDPFAGMRKVAGCGDPYMAGQMPSSA
MQEMYGRSAPGPMSALGMGPRPQYPYGPGYDRRSEHMMRMEGSMGPPGGQGSVGPSNSDG
SIYSSSRYPSQRHEGYGQHYPGMPYGVHPSGMFPQQQGYKRALDGMYGPPAKRHEGEMYG
MPYGGQQADMYSQYGSGYPGPDRRSMQGQFPYAYGRERMAPGQGPPQHSMSAEMMGAGPP
SANSGEVPNMWPSRTDMPYPYPTRPGHSSQMPTYPGMGRGDDMDGMRGGPDGQWPGHRGQ
SPFMSTSSGSMAAMSSRQPPSSYQTNQSMVNHVSRAPSPASYQRSLESRMSPSKAFMTPM
KMPKPGMQMHSGGPQGQMPPNLRKDLNYPLGSVEGTQPILKSRRKLTSKDTGTPEAWRVM
MSLKSGLLAESTWALDTINILLYDDSTVASFNLSQLPGFLELIVEYFRRGLIEIFGILEE
YEVGNVGQKTLLGPAKEEKMEEDSATKDESCETVVEQSAPAATDTVEFPPSAPTAEVLAA
PTVPEQKQEETAAEDKKEANEKEEKEAQEKEPEKKELEKKELEKKEQEKKEPEKKELEKK
EQEKKEPEKKEEEEVKGEETVEDTTEKEVESSHEPEPKSKQASKYDKLPVKIVHKDDFLE
DISDQLGHVQEFSSGLIHWQVGGGDSTAHIQMHFERRDGDIHTPVLESQSSTSGQESKEK
DEERGRSIVATIDDVLSSHTGPLLEADDDGDSSTSSYRFRLHHAQSQKGLTLLEDEPRCL
DEAPLASAAGWQDALAKRCICISNIVRSLSFIPGNDGEMSRHAGMVLLLGRLLLLHHQHP
ERKRQMSPPALPGDKEEPQEERGMACSKDEWWWDCLSALRENAMVTLANISGQLDLSLYP
ESICMPILDGLLHWMVCPSAEAQDPFPSLGPHSALSPQRLVLECLCKLSVQDGNVDLMLA
TPPLVRQEKLFATLVRLVGERKQQVYREMAVAMLSNLAQGEPSAARAIAVQKGSVGNLMG
FLEDGVAMVQYQQNPHSLLHMGHPPMDPPSVNMMCHAAKALLALAKVEENRPEFVLFESR
LLDVAISSVLPLAVAAITCEVLFQIGRS
NT seq
7107 nt
NT seq
+upstream
nt +downstream
nt
atggccgcgcaagtggcatctgccccggccgcatctaatagtaaaaataaaaatgtatcc
ggaggtttgagtcaagaattaaactctggaaaatcaggagggacgacacaaggatctggc
gcaatgcacggagccggagacgggactacaactctgaataatgtagaccatcgtctaccg
actgagttgaacatgaccaacagaacttgtacaccagcgaacagtaattctgacaagccg
aaggaaagtggaaatataacaacttctggttcttcttcgtctaactctacaacctctccg
aatatggaaactggtttgatatcaaatcataaactaaaaggcattgctggagaccttcct
tcatctctcaatcgtgcgcctcagcagacacagttcaatcagttttcacatcatcagcgg
cagttacaaagtaacaacatcaacaagaaccaaataatgacaccaggagataacgacaat
cagcagcacggaggaaaagagaatgttttggggagacatgttgaacatcagcaaatgctg
aataaaggtggggaggatcagccttgcaaaccagaccagatgggcagtaggtatgagcac
gccaactttggaccaacgaacagcaacaaccacgcgcataaccccagtggcaaaagtggt
gtttctgagtttaataattattatggtaattccagagcagggccctgctttgatcaacat
ggcggccaacaaagccatggtataggaataatgcactcttcgacaaacaataatgtggaa
aactcgcatgaaagctatcataacacccagtacaaccattacccggggtaccgacagggg
tacggtagcgccggctacggtatgatgggcggctcgcgtcagggtaataacatgttgatg
ggcccaagcagcaactcatctggccaaagcaaagggttggcatctgcaagttcttctgga
ggaaatatcgggagctttcagagatttcctggacaaagccagcacccctcgggggctacg
ccgacattgaaccaacttctcacgtctccgagtcccatgatgcggggatatggtggtggc
tatccagactacagtagttctgctgtaccccaagcgggcatggggatgagcaaagaaata
agttcgcagtatgggtcttcggctcatgcatggggaggccaacgaaatcatccaggaatg
agtcctgggaacggacaaagtctcaacagacctcaggtgggctccatggacttcatggtg
atgaagcgctctcagctgtatgggatgggcgggagcaacccctactcgcagcagcagcaa
ggtgggccctaccccagccagccatacgtatcgcccgcctcccaccggtatccaatggga
atgcaagggcgtggtcagcttggcatgggtgggatgccatatccccagcaacagcaggtg
cctccccagtatggccagcagggaatggctgcatattgccagcagggccagccaccatac
tttaaccagtcccagcagcagcagcagcagcagcagcagcagcaccagtcaggcacccca
gcccagccagtctacctgccaccccgtcctccaccacagcaggaggtctcacaggaggct
tatgggaacagcagagtagggggcagcaatggtggcagcatcagcactagccagcccgtg
gggaactctgggaagaacaaccatgaagatgtgggtcccatgcaccacgaccgtccctcc
agcctaccggacctgtctggctccatcgatgacctgcccacagggacagaggctggcctc
agctcagtcgtcagcgccacctcaggaggatcaggcagtggcagtggcagtggcagtggc
agtgggagcggcagcagccagggggagcagagcaacccagcccggtcgcccttctccccc
cacgcctcccctcgtctcccgggggtccgcagcgggccttccccctctccagtgggctcc
cctgcaggctccagccagtcccgctctggacccatttccccagccagcgctccagggtcc
cagaatgccccacagactccggggagcatgtccgatgtggcctcccatcccactggaaac
cagtctcaggagaggggattcatgtccaacatgcaccggaatcagtccgtgtcccagttt
ggtgcccagcagtcgggggccccaatgtccccccaccgctccccagtgggacagatgcac
cctggggtgggctcctaccagcatgcgggctccaacaccagcggcccttacggacatcag
agcggccaatatggaccacaaggtaactactcgagaccgtccaattacagcggagcgccc
aatgccagctatagcggcccaggccccggcatgaacaacaacagcctggggatgaacgcc
agcagccccatgcacggccagggcccagggcagcccatggccatgggaaggagcccaggt
gcgggcagccgcccgtacgcgggcaacatgacgagtatggcccccacttctcccaacatg
ccacagtctgccgggcctgggatggggccgcctatgggcagcgtgaatcgtaaggcccag
gaggcggcgacggcggcaatgcaggccgctgccagcactgcacagggaagaaggtctcca
ttcccaagaccccctatctacaccaaccagggtcaccctgggccaggcccccgccaaccc
cctgccctcataccctcaccacacgcaccccacggagtccacacgccccgcgctgcccac
cacagctcccacgccacgcagcagtctgagccctacggacaggggagcttctccgccctg
aaccagatgagtgggatggggacaggtgccccctatgggcagccatacgccaacgcctct
gggatgatgacatcacaagcccccacccacaccactccgacctcagtgcttcattcctcc
ggctgttgtcttccaggagcgggaggggtgagtggagagggggtgatgggagccgaggcc
aagcagaaaggagaaggcaaagaggagcctcccacaacagagccgcctaaacccaaggat
ggcttcaactcccagtgtctgtcccagcccccgaccccatctccgctggccccaagtcca
gccagcctgtcctcctgtcacggcgacgacagtgacagcatcagcagtcccgtctggccc
aagactccatccagtccgaagtccagctcggctcccatggctggggataaggtgtcccgg
ctgtacgagctgggcggcgagcccgagaggaggccctggctggaccgctacctgtccttc
atggaggagcgcggcacgcctgtcccccacctgccggtcatcggcaagaagacactggac
ctctaccgcctctacaccgctgtcaaggagatcggggggctcgccatgatgaacaagaac
aagaagtggagggagctgtcgtccaccctgagcgtggggacctccagcacgtcggccagc
tctctgaagaagcactacatccagttcctgtttgcctatgagtgtaatgtggagcgagga
gaggagcccccactggacggctgccccgcaggggacaagaagcagccaccgcggcctcag
cctccgtcgccagccaactcaggctctctgcaggggcctcataccccccagtccacgggc
agcagctccatggccgagacgccaggcgacctgaagcggcccaccccagccaacacccca
cagggccatgtgccacctgcaccagtcggcaggaacaattcgatcagcatccaggacccc
ttctcggaggccagcgaccccagcctccccaaacgcaactccctccccccgagtggcccc
taccagccagagcccatgatgaggatgcagtttgaggccaacaaggacccctttgcgggg
atgaggaaggtggcaggctgtggagatccttatatggccgggcagatgccctccagtgcc
atgcaggagatgtatggcaggagtgcgcccggccccatgtctgctctgggtatgggccca
cgcccccagtacccctatggaccaggctatgacaggaggtcagagcacatgatgaggatg
gaggggagcatgggtccacctggaggtcaaggcagtgttggcccatcaaacagtgatggc
agtatctactcatccagcagatatccctcacaaaggcatgagggctacgggcagcattac
cctggtatgccatacggtgtacacccttctggaatgttccctcagcaacagggctacaag
cgggctctggatggcatgtacggccccccagcaaagaggcatgagggggagatgtacgga
atgccttatggtggtcagcaggcggacatgtacagccagtacggcagcggctaccctggt
cctgaccggaggtcaatgcagggccagttcccttatgcctatggccgagagcgcatggcc
ccaggacagggccccccacagcacagcatgtctgctgagatgatgggagcagggcctcca
tcggctaacagcggtgaggtgcccaacatgtggccctccaggacagacatgccctacccg
tacccaaccaggccaggccactcctcacagatgcccacttacccgggcatgggccgcggg
gacgacatggatggcatgcggggcggtccggacggccagtggcctgggcaccgcggccag
tcccccttcatgtccacctcctcgggctcgatggcagccatgagctccaggcagccaccg
tcctcctaccagaccaaccagtctatggtcaaccacgtgtcccgagcccccagcccggcc
tcctaccagcgctcactggagtcacgcatgtcccccagcaaagccttcatgacgcccatg
aaaatgcccaagcctggcatgcagatgcacagcggcggaccacagggccagatgccaccc
aacctacgcaaagacctcaactacccactggggtccgtagaaggcacccaacccatcttg
aagtcacgtcgcaagcttacctcaaaggacactggaaccccagaggcctggcgagtgatg
atgtccctgaagtcaggcctgctagctgagagcacgtgggcgttggacaccattaacatt
ctcctgtatgacgacagcactgtggcctccttcaacctctctcagttgcctggctttttg
gagctcattgtggaatacttcagaaggggcctcattgagatttttggtatcctagaggag
tatgaagtgggcaacgttgggcagaaaaccctgcttggtcctgccaaggaggagaaaatg
gaggaggactcggctactaaagacgaaagctgtgaaacagtggtggagcagagtgcccca
gcagcgaccgacactgtggagttcccccccagcgccccaacagcagaggtcctagcagcc
ccaactgtcccagagcagaaacaggaggagacagcagctgaggacaaaaaggaggccaat
gagaaggaggaaaaggaggcccaggagaaggagccggagaagaaggagctggagaagaag
gagctggagaagaaggagcaggagaagaaggagccggagaagaaggagctggagaagaag
gagcaggagaagaaggagccggagaagaaggaggaggaggaggttaagggagaagaaact
gttgaggacaccacagagaaggaggtagagtcttctcatgaacctgagccgaaatccaag
caagccagcaagtacgataagctccctgtcaaaatagtccacaaagacgatttcctggag
gacatatcagaccagctgggccatgttcaggagttctccagtggcctcattcactggcag
gttggtggcggagactcaaccgcccacatccagatgcacttcgagagacgtgatggagac
atccacacgcctgtgctagagagccagagcagcacgtctgggcaagagagcaaagagaaa
gatgaggaaagagggagaagcatcgtggccaccatcgatgacgtgctgtcctcccacaca
ggacccttactagaggcagatgatgatggcgactcctccacctcctcctaccgcttccgc
ctccatcacgcacagagtcagaagggcctcaccctgctggaggacgagcctcgctgcctg
gacgaggccccgttggcctcagcggccggctggcaggatgcgctggccaagcgctgcatc
tgcatctccaacattgtccggagcctgtccttcatccctggcaacgatggcgaaatgtcg
cgacacgccggcatggtactgctcctgggccgcctgctgcttctgcaccaccagcacccg
gagcgcaaacggcagatgtccccaccggcgctgcccggtgacaaggaggagccgcaggaa
gagcgtggcatggcctgcagcaaagacgagtggtggtgggactgcctgtcggcactgcgc
gagaacgccatggtcacgctggccaacatctccgggcagctggatctgtcgctctatccc
gagagcatctgcatgcccatcctggacgggctcctgcactggatggtgtgcccatcggcc
gaggcccaggacccgttcccgtcgctggggccgcactcggcgctgagcccccagcggctg
gtgctggagtgcctgtgcaaactgagcgtgcaggacggcaacgtggacctgatgctggcc
acgccaccgctggtgcggcaggagaagctgttcgccacgctggtgcggctagtgggcgag
cgcaagcagcaggtgtaccgtgagatggccgtggcgatgctgtccaacctggcgcagggc
gagccgtcggccgcccgcgccatcgccgtgcagaagggcagcgtgggcaacctcatggga
ttcctggaggacggagtggccatggtgcagtaccagcagaacccccacagcctgctgcac
atgggccacccacccatggacccgcccagtgtcaacatgatgtgccacgccgccaaggct
ctgctggcgctggccaaggtggaggagaaccggccggagtttgtgctgttcgagagccgg
ctgctggacgtggccatctcctccgtgctgcctttggccgtggcggccattacgtgcgaa
gtacttttccagatcggccgctcgtga
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integrated database retrieval system
