Alosa sapidissima (American shad): 121693708
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Entry
121693708 CDS
T11137
Name
(RefSeq) transcription termination factor 2-like isoform X1
KO
K15173
transcription termination factor 2 [EC:5.6.2.-]
Organism
asad Alosa sapidissima (American shad)
Brite
KEGG Orthology (KO) [BR:
asad00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
asad03021
]
121693708
Transcription machinery [BR:
asad03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
121693708
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
Zn_ribbon_GRF
DEAD
DNA_pol_phi
Motif
Other DBs
NCBI-GeneID:
121693708
NCBI-ProteinID:
XP_041929268
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All DBs
Position
2:1756219..1770916
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AA seq
1243 aa
AA seq
DB search
MEIVRCDTHGTTCLLKTGTRDGPNKGKSFYICAARQDPPCDFTHPADIPPSHCLHHEDSV
VELQALIKSVDKSQRYRLYFRCALGKKEGQKWCDSVPWSSKEPEKRSPLTDKQLQASSLP
PVRNPFKAPSKTDQTSEWRKLQQPEGKEGDARSQEQENQVREKNQDGERHGSSGEGGGGC
HREREQERGCGGGREESGGAAEKEGLSNGETWRAKPLPAGMKIKKSMCGEEEEKKKKNDS
NRTTGGGEGVEEEEGSLERSKTAPTNKRSTTEGKKSAKAFSPSPKPASEQTTEDRSGAVS
PHESGLHRDKDKKWHAGKCRTSDSDSQHRTCSSVDTATEAPRHPHSASSSSSSSSSGGSS
VEETPKASSGTPDSFASIAALAAQNNPSSAAERHQEAHKTPRDQSQRRSPVELNGDDDDD
DDDDDEEEEEREDGSGDDDDDVQLVSVQPGPKKTSPVPPGAPMQKTLTSYFLSGSKLKLH
SQLSAQLKQKKATLSMVNVSALPDKGQRLRSQVKELEDTLTSLSLTPLTESESQEETKEE
QKPSPVPSPSNPFSRPGGTILLPDVPAPTLYEAPQSASSLSMGLSQGYTQMFGVDPQSHT
FYGGRMTDSRLMAIRNATTETIDHLHKSLETCPGPDTEAKDPKGIKVQLLPHQRRALAWL
LWREDQKPCGGILADDMGLGKTLTMIALILAQKKPKDEKDPKLEGWISKHDSSLVVSQGT
LIICPASLVHHWKNEVERHIKSSRLSVYLYHGPNRQRNAKLLADYDVVVTTYNLVSKEIP
VQKEEAERPSQDADHTGANLPPLLRVAWARVILDEAHNIKNPKVQTSMAVCKLRARARWA
VTGTPIQNNLLDMYSLLKFMRCSPFDEYKLWKAQVDNGSKRGGERLNILTQALLLRRTKD
QQDSTGKPLVDLPDRSCEVHRVKLSEDEQSVYDVVFARSKSTLQSYLRRHEGKEGHKGDG
SNPFEKVANEFGVSQQGALSSSQQQQPQASSAVHILSLLLRLRQCCCHLSLLKKTLDQSE
LQGDGVTLSLEEQLNALSLGGEPPDPSADLKDTVCLNGSRFRSELFEDTRGSTKLSAVLT
ELKEIRRKDQKSVIVSQWTSMLRIVAVHLKSMGLTFGVIDGTVNIKHRMDLVEEFNTNPK
GPQVMLVSLCAGGVGLNLVGGNHLFLIDMHWNPALEDQACDRIYRVGQHRDVTIHKFICE
GTVEDKISSLQEKKKELAQKVLTGTGSTFTKLSLADLRVIFGV
NT seq
3732 nt
NT seq
+upstream
nt +downstream
nt
atggaaattgtgcgttgtgacacacatggaactacttgtctattgaaaactggtaccaga
gatgggccaaacaagggcaaatcgttctacatctgtgcagctcgtcaggatcctccttgt
gatttcacccacccagcagacatcccaccctctcactgtttacaccatgaagactctgta
gttgaactccaggctctcattaagtctgttgacaaatctcagcggtacaggttgtacttc
cgctgtgcgctgggaaagaaggaagggcagaagtggtgcgatagtgttccctggagttct
aaagaaccagagaaaaggagtcctctgacagacaaacagctacaggcctccagccttcct
cccgttaggaaccccttcaaagcccccagcaaaacggaccagacatccgagtggaggaag
ctgcagcagccggaggggaaggagggggacgcaaggagccaagagcaggagaaccaagtc
cgagagaagaaccaagatggagaacgccacggcagcagcggagaagggggtggtggttgc
catcgcgagagggaacaagagcgaggctgtggaggtggaagggaggaatctgggggggcg
gctgagaaagaggggctcagcaatggagagacctggagggccaaaccactgcctgcaggg
atgaagataaagaagagcatgtgtggagaggaggaagagaagaagaagaagaacgacagc
aacagaaccaccggaggaggagaaggagtagaggaagaagagggcagtctggagagaagt
aaaactgcccccaccaacaagagaagcactacagaagggaagaagtctgcgaaagcattc
agtcccagccctaaacctgccagtgagcagaccacagaggatcggtctggagcagtctca
cctcacgaatctggcctacacagagacaaagacaagaagtggcatgctgggaaatgtcgc
acctcagactcagacagccaacacaggacgtgcagcagcgtggacacggccactgaagca
cccagacatcctcactcggccagcagcagcagcagcagcagcagcagtggcggctctagt
gtggaggagactccgaaggcgtccagcgggacaccagacagttttgcctccatcgccgct
ctagcagcccagaacaatcccagctcagcagcagagaggcaccaggaggcccacaagact
ccacgggaccaatctcagagacggagcccagtagagctgaacggtgatgacgatgatgat
gatgacgatgatgatgaagaggaggaggaaagggaggatggcagtggtgatgacgatgat
gatgtccagttggtttcggtgcagcccgggccaaagaagacctcccctgtccccccaggc
gctcccatgcagaagactctcacctcgtacttcctgtccggctccaagctgaagctgcac
agccagctcagtgcccagctcaagcagaagaaggccaccctgtccatggtgaacgtgtcg
gcgctgcctgataagggccagaggctgaggagtcaggtgaaggagctagaggacacgctg
acctcgctgagtctcactcctctcacagagtctgagtcccaggaggagactaaggaggag
cagaagccgtctcccgtgcctagcccgtccaaccccttcagccgcccgggcggaaccatc
ctgctccccgacgtcccggccccgaccctctacgaggccccacagtcggccagctctctg
tcgatggggctcagccagggctacactcagatgttcggagtggacccccagagtcacacc
ttctacgggggtaggatgaccgacagtcgtctgatggccatccgcaacgccaccaccgag
accatcgaccacctgcacaagtccctggagacctgccccggcccagacacagaggccaaa
gaccccaaaggcatcaaggtgcagttacttcctcatcagagacgggctcttgcctggctg
ctgtggagagaagaccagaagccatgcggaggaattctggcggatgacatgggtctggga
aagacgctcaccatgatcgctctaatcctggctcagaagaagccaaaggacgagaaggac
ccaaaactggaggggtggatctccaaacatgactcctctctggtggtgtcccagggcact
ctgatcatctgccccgcctcgctggtgcaccactggaagaatgaggtggagaggcacatc
aagagcagccgcctcagcgtctacctctaccacgggcccaaccgccagagaaacgccaaa
ctactggcagactatgatgtggtggtcaccacctacaatctggtctccaaggagatcccc
gtgcagaaggaagaagctgagaggccaagtcaggacgctgaccatacaggagcgaacttg
cctccactgctgcgcgtggcctgggcccgagtgatcctggacgaggcccacaacatcaag
aaccccaaggtgcagacctccatggccgtgtgcaagctgagggcgcgggcccgctgggcc
gtcaccggaactcccatccagaacaacctgctggacatgtactcactgctcaagttcatg
agatgttctccctttgacgagtacaagctgtggaaggctcaggtagataatggctccaag
aggggtggggagaggctcaacatcctgacccaggccctgctgctgcgccggaccaaagac
cagcaggactccaccggcaaaccactggtggatctgcctgaccgcagctgtgaggtgcac
cgcgtgaagctgtctgaggatgagcagtctgtttacgacgtggtgttcgcccgatccaag
tccactcttcagtcctacctgaggagacatgaaggaaaagagggccacaagggagatggc
agcaacccctttgagaaagtggcaaatgagtttggcgtgtcccagcagggggcgctatcc
tcgtcccagcagcagcagccccaggcctccagtgccgtccacatcctctccctgctgctc
agactcagacagtgctgctgccacctgtccctgctcaaaaagactctggaccaatcagag
ctgcagggcgacggcgtcaccctgtccttggaggagcagctgaatgccctgtccctcggc
ggcgagccgcctgaccccagcgccgacctcaaggacaccgtctgcctcaacggctcccga
ttccgctccgagctcttcgaggacacccgcgggagcaccaagctctctgctgtcctcact
gaactcaaggagatcaggaggaaagatcagaaaagtgtgatagtgtctcagtggactagc
atgctgcgcatcgttgcggtgcacctgaagagcatggggctgacgttcggtgtgatcgac
ggaacagtcaacattaaacatcgcatggacctggtggaggagtttaacaccaaccccaag
ggaccacaggtgatgctggtgtccctatgtgctggtggggtaggccttaacctggttggt
gggaatcatctctttctcatcgatatgcactggaaccctgccttagaggaccaggcctgt
gaccgcatctacagggtgggccaacatcgcgacgtcaccattcacaagttcatctgtgag
ggcacagtggaggacaagatctcctccctccaggagaagaagaaggagctggctcagaag
gtgctgacgggcactgggtccacctttaccaagctctcccttgctgacctcagggtcatc
ttcggtgtctag
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