Alosa sapidissima (American shad): 121693939
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Entry
121693939 CDS
T11137
Symbol
atrx
Name
(RefSeq) transcriptional regulator ATRX isoform X1
KO
K10779
transcriptional regulator ATRX
Organism
asad Alosa sapidissima (American shad)
Pathway
asad04110
Cell cycle
Brite
KEGG Orthology (KO) [BR:
asad00001
]
09140 Cellular Processes
09143 Cell growth and death
04110 Cell cycle
121693939 (atrx)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
asad03000
]
121693939 (atrx)
03036 Chromosome and associated proteins [BR:
asad03036
]
121693939 (atrx)
Transcription factors [BR:
asad03000
]
Eukaryotic type
Zinc finger
Cys4 GATA-factors
121693939 (atrx)
Chromosome and associated proteins [BR:
asad03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
121693939 (atrx)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
ATRX_C
ADD_ATRX
Helicase_C
Motif
Other DBs
NCBI-GeneID:
121693939
NCBI-ProteinID:
XP_041929737
LinkDB
All DBs
Position
20:complement(24844167..24900295)
Genome browser
AA seq
2111 aa
AA seq
DB search
MTTDIKSIHGSSSKLNTLVTKLHEYMSYSAEEDINDAQTSGNMASTESNTTDQIMEEPGS
STETAKPSSSRPKRKPTTVTKHTGLDQSDDSEQSDQEENPSDSNTEMTSLPKGTVVVNPE
PVDDESKDDFTGPEFKSRSAKSRGEVQRKLVGNEVSLHERVNCTACGQQVNPYQRDSVLE
HPILKVLICKSCYKYYMSDDISKDADGMDEQCRWCAEGGNLICCDYCSNAFCKKCILRNL
GRKELSGIMDESSKWYCFVCSPQPIIELSSACCKIMQKLEQLWRRREHKPKLGKSERKRD
KAALNGKEHHSESSGTLTFSPKCLQIPKELVKKTKKLIETTTGLNNTFVQFIQQASKDKG
AKPMLRYRHLKAFKSVLADLKMAHATLEEALEVEFRELELQNRAEGTVGHPLFEHQTPAK
AEPVELAGADEVQNDEVQNDEVQNDEVQNDEAIDGSDGEEDTADYMAADDDVEMKDSPIP
SPSEQLFNKSKVRKVSTLREKEEDDDEVKLDGDCGVEEDGNMLDGDTTELDRAILSATPS
IPDELFQMVESLADSTKLAAADEAREAKVAVSSPSSPEESQPLEPDEAGEKSSGAQKRIA
TLGKKKLVVKLTPMPLRVSLKAETVSENKVERVSPDDCPKSRRSSRVKTTPLRKPSESKN
KGKSNGKQDADKRVKVETTKTSSDQEEGAAAKVSSTQMDSDSDEVPLILSERAALEASSG
DEVASSGKKVKRECRSNTVAQSSERRSTKRKLNLKSTSSESDQESGTKKSTTKSAGKKTK
TADSDSENFDSDLEKEMKSLGKLGTGKKGLSKVKQKSKESPEKSAKTKKRSFERTRHTRR
GKASANQSPSSSENEEDKAEDSGEDSDDKQKIRPLTDSVMPGVEAFQQSSGDEGGVKGEP
SQMPEDDDDDPENRIAKKMLLAQIKATYSSGAESSSENSDSEQEAGKPAKKVKNESGEEN
GEDGDSSEDNEDSDTDSDADKKKGRRHHLLRHKLSLSEGESGTEKSAKGGKKEKGKKKSR
RKVVSDDSADSDFEGSPSSDNSGSALSEEVSDSEGEGKRRRTRAAKKAAKEKEERSYKQK
KKRRRIKVQDSSSGKSGEDEEEGEEDGEGDDDDDDDDDKGTPKGRKKIRKILKESKLRME
TRDALKEEEDRRKRIAEREALREKLREVIVLDEASQVIVVDDSSQIACPITTKLVLDEDE
ETKEPLVQVHRNLVTKLKPHQVDGVQFIWDCCVESVKKTKKSAGSGCILAHCMGLGKTLQ
VVTFLHTMLLCEKLNFSTALVVCPLNTVLNWKNEFEKWQVGFKDEESLEVVELATVKRPQ
ERAYAMQRWHEDGGVLIIGYEMYRNLTQGRSIKSKKLKETFQKTLVDPGPDFVICDEGHI
LKNEASAISKAMNNIKTRRRVVLTGTPLQNNLIEYHCMVNFIKENLLGSVKEFRNRFINP
IQNGQCADSTPQDVRLMKKRAHILYEMLAGCVQRRDYTALTKFLPPKHEYVLSVRMTSIQ
AKLYRHYLDHFTSVGSALEGNRGKAGTKLFQDFQMLSRIWTHPWCLQLDYISKENKGYFD
EDSMDEFIASDTEESSMSLTSEDEKPKKKKARGKGKKQSSDGSDSDAVEVIKEWNTSSRG
GNPESRNRGEPVEEPKGSSGSYSPDWYKDFVTEEDAEILEHSGKVSLLFQILRMAEETDE
KVLVFSQSLISLDLIEDFLELSCRAKDEGRESPYKGEGKWFRNIDYYRLDGSTNAVTRKK
WAEDFNDPNNPRGRLFLISTRAGSLGINLVAANRVIIFDASWNPSYDIQSIFRVYRFGQH
RPVFVYRFLAQGTMEEKIYDRQVAKQSLSFRVVDQQQIERHFTMNELTELYTFDPELMED
SAGEGKKKRHATPVLPKDPFLAEMLQNHKDQLVGYHEHDSLLDHKEEEALSEEERKAAWA
EYEAEKKGLSLRTNQQAYNMAMGNQGGYFPFNMAALATMTNRELEDLVNQGRQKVMETSN
AINSLASEPLEDLISRIWKENPSLDESRVQALAMAQQATIERERQRIEVAYRDVLHKQQT
LMMYVQKVLNNRKVQEQQMAMAKQGLLMNQLALQNGMMGPGNLNQIDLLGLYQHMQQMQG
MGANPGPSKGL
NT seq
6336 nt
NT seq
+upstream
nt +downstream
nt
atgactacagacatcaaaagtatccatggtagttccagcaagctgaatacattggtgaca
aaactccatgagtacatgagttattctgcagaagaggatattaatgatgcccaaacgtct
ggtaatatggcctctacagaatcaaacacaactgaccaaatcatggaagagcctgggagc
tccacagagacagcaaagccttcctcttcaagacctaagaggaaacccactactgtgacc
aagcacactggcctagatcagtctgacgactcggagcagagtgatcaggaggaaaacccc
tctgacagcaacacagaaatgaccagtttaccaaaaggcactgtagtggtcaaccctgaa
cctgtagatgatgaatctaaagatgattttacaggcccagagttcaaaagccgaagcgcg
aagagtagaggagaggtccaaaggaaacttgtgggaaatgaagtttcacttcatgaaaga
gtgaattgcacagcttgcggtcagcaagtcaatccttatcagagggattcagtcctggag
catcccattttaaaagttcttatctgcaagtcatgttacaaatactacatgagtgatgac
atcagcaaagatgccgatggtatggatgaacagtgccgatggtgtgctgaaggaggaaac
ctgatctgttgtgactattgcagtaatgccttctgcaaaaagtgcatcttacgcaacctt
ggccgaaaagagttgtctgggataatggacgagagcagcaagtggtactgctttgtctgt
agccctcaacccataattgagttgtcctcggcctgctgcaagatcatgcagaaacttgag
caattgtggcgtcgtcgggaacacaagccaaaattgggcaagtcggagcgcaagcgagat
aaagccgccctcaatgggaaggagcaccattcagagagttctggaaccttgacgttctcc
cccaaatgcctacagattccaaaagaactggttaaaaagacgaaaaagctcatagagact
acgacaggcttgaacaacacgtttgtacagttcattcagcaggcctccaaagacaaaggg
gccaaaccaatgttacggtaccgccatctcaaagcttttaagtctgtgctggctgacctg
aagatggctcatgccaccctggaggaggccttggaggtggagttcagagagctagagctc
cagaacagggcagagggcacagtgggtcaccccttatttgagcaccaaacaccagctaaa
gcggagcccgttgagctggctggggctgatgaggtccagaatgatgaggtccagaatgat
gaggttcagaatgatgaggtccagaatgacgaggccatagatgggtctgatggcgaggag
gacaccgcagattatatggccgcagatgatgacgtggagatgaaagacagccccattcct
tcaccctctgaacagctctttaataagagcaaggttaggaaggtgagcacgctcagggaa
aaggaggaggatgatgacgaagtcaagctggatggagactgtggcgtagaggaggatggg
aatatgctggacggagacacgacagagcttgaccgggcgattctctcggctacgccctct
atccctgatgaactgttccagatggttgagagtctcgcagactccaccaagcttgctgct
gctgatgaggccagagaggccaaagttgccgtatcctcaccttcttcgcctgaagaatcc
caacccttagagccagacgaggctggagaaaagtcctccggggctcagaaaaggatcgct
accctaggcaaaaaaaagcttgtggtgaagctaacccccatgcctctccgagtcagtttg
aaagctgagacagtcagcgagaacaaggtcgaacgtgtctctccggatgattgccccaag
agccgccgatcctccagagtcaagacgacgcccctacgcaaaccctccgaaagcaagaat
aagggtaaaagcaacggcaagcaggacgcagacaagagggtaaaggtggagaccacaaag
acctccagtgaccaggaggaaggggcagcagctaaggtgtcgtccacccaaatggattct
gactcggatgaggtccctttaatccttagtgagagggcagccctggaagccagctcggga
gatgaggtagcatcttctggaaagaaggttaaaagggagtgccgcagtaacacagtggca
cagtcctcagagaggaggtcaaccaagcgcaagcttaacttgaagtccacctcttctgag
tctgaccaagaatcgggaaccaagaagagtacgaccaagagtgcaggcaagaaaacaaag
actgccgactcagactctgaaaacttcgactctgatctggagaaagaaatgaaaagcctg
ggtaagcttggcacaggcaagaaaggacttagtaaggtgaaacagaaaagcaaagagtcc
cctgagaagtctgccaaaactaagaaaaggtccttcgaacgcacacgccataccaggaga
ggcaaggccagtgccaaccaatcaccttcctccagtgaaaatgaggaagacaaagcagag
gactctggtgaggacagcgacgacaagcaaaagattcggccccttacggactcagtgatg
cccggcgtagaggcattccagcagtcgtcaggggatgaaggtggcgtcaaaggtgaaccc
tctcagatgcctgaggatgatgacgatgacccagagaatagaattgcaaagaaaatgctg
cttgcacaaatcaaggccacttattcgtcaggggcggagagctcttcggagaacagcgac
tccgagcaggaggctggaaagccggccaagaaggtcaagaatgaaagcggcgaggagaat
ggagaggatggtgatagctcagaggacaacgaggactctgacacagactctgatgccgat
aaaaagaagggccggcgccatcaccttctccggcacaagctgtcgcttagcgagggcgaa
tcaggcacagagaagtcagccaaaggcgggaagaaggaaaagggcaaaaagaagagcagg
aggaaagtagtcagtgatgattcggcggactctgactttgagggttcaccgtcaagtgat
aacagtggatctgctcttagcgaggaagtcagtgactctgagggagaaggcaaacgacga
agaaccagagctgctaagaaggcggcaaaagagaaggaggagaggagctacaagcagaag
aagaagcgccgtcgcatcaaagtgcaggactcctccagtggcaagagtggggaggatgag
gaggagggcgaagaagatggagaaggagacgacgacgacgacgacgacgacgacaaggga
acgccaaaaggccgcaagaagatccggaagattctgaaagagtccaaactgcggatggag
acgcgagatgctctgaaggaggaggaggaccggaggaagcgcatcgccgagagagaggca
ctgagggagaaacttcgggaggtgatcgtgctggacgaggcgtctcaggtgatcgtggtg
gacgattcgtcccagatcgcctgtcccatcacaaccaagctggtgctggacgaggacgag
gagaccaaagagccgctcgtgcaggtgcacaggaacctggtcaccaagctcaagcctcac
caggtggatggtgtgcagttcatctgggactgctgcgttgagtctgtaaagaagaccaag
aagtctgccggctcaggctgcattctggcccactgcatgggcctggggaaaacgctacag
gtggtgacgttcctccacaccatgttgctgtgtgagaagctgaacttcagcactgcgctg
gtggtctgtccactcaacaccgtcctcaactggaagaatgagtttgagaagtggcaggtt
ggcttcaaggatgaagagagcttagaggtggtcgagctcgccaccgtgaagcgtcctcag
gagcgggcgtacgccatgcagcgctggcacgaggatggcggcgtgttgatcatcggctac
gagatgtaccgcaacctcacgcagggccgcagcatcaagagcaagaagctcaaagagacc
tttcagaagaccctggtggatccaggccctgactttgtgatctgcgacgagggccacatc
ctgaaaaacgaggcgtccgccatctccaaagccatgaacaacatcaagacccgcaggaga
gttgttctcaccggaacaccgctgcaaaacaacctcattgagtaccactgcatggtgaac
ttcatcaaagagaacctgctgggttccgtcaaagagttccggaaccgtttcatcaacccc
atccagaacggccagtgcgccgactccaccccacaggacgtccggctcatgaagaagagg
gcgcacatcctctatgagatgctggcaggatgtgtccagagacgggattatacagcactg
accaagttcctgcccccgaagcacgagtatgtgttgtctgtacgcatgacgtccatccag
gccaagctgtaccgccactacctggaccacttcacaagtgtggggagtgcgctagagggg
aaccgggggaaggctgggaccaaactcttccaggacttccagatgctgagcaggatttgg
actcatccctggtgtctgcagctggactacatcagcaaagaaaacaagggttactttgat
gaggacagcatggatgagttcatcgcctcggacacagaagagtcttcgatgagcctcacc
tctgaggacgagaagcccaagaagaagaaggctcgcgggaaggggaagaagcagagctcg
gatggctccgatagcgacgccgtggaggtcatcaaggagtggaacaccagctcccgcggc
ggcaaccccgagagtcgcaaccggggcgaaccagtcgaggagcccaagggttcctctggc
agctattctcctgactggtacaaggactttgtgactgaggaagatgccgagatccttgaa
cattccggaaaagtgtcgcttctctttcagatcctacgcatggccgaagagacagacgaa
aaagttctagtgttcagtcagtcccttatctctctggatctgatagaagacttcctggag
ctctcctgtcgggcaaaggatgaaggaagggagtctccatacaaaggagaggggaagtgg
ttccggaacattgactactatcgcctggacggctccaccaatgctgtgacccgcaagaag
tgggcagaggactttaacgatccaaacaaccccaggggtcgtctcttcctcatctcgacc
agagcaggctctctgggcatcaacctggtggcggccaaccgggtcatcatcttcgacgcc
tcctggaacccgtcctacgacatccagagtatcttccgcgtctaccgtttcggccagcac
cggcccgtcttcgtctacaggtttctggctcagggaaccatggaagagaagatctacgac
cgccaggtggccaagcagtcgctgtcgttccgcgtggtggaccagcagcagattgagcgc
cacttcaccatgaacgagctgaccgagctctacacctttgaccccgagctgatggaggac
tctgctggagaaggcaagaagaagaggcacgccacgccagtgctgccgaaggaccccttc
ctggcggagatgctgcagaaccataaggaccagctggtgggctaccacgagcacgactcg
ctgctggaccacaaggaggaggaggccctcagcgaggaggaacgcaaggcagcctgggca
gagtacgaggctgagaagaagggtctgtctctgcgcacaaaccagcaggcgtataacatg
gcgatgggcaaccagggcggctacttccccttcaatatggccgcgctggccaccatgacc
aaccgggagctggaggatctggtgaatcagggtcgacagaaggtcatggagaccagcaac
gccatcaactcactggcgtcagagccactggaggatctgatcagtcgcatctggaaggag
aaccccagcctggacgagtcgcgggtgcaggccctggccatggcacagcaggccaccatt
gagcgtgagcgtcagcgcatagaggtggcctaccgagacgtgctccacaagcagcagacg
ctgatgatgtatgtccagaaggtgctgaacaaccgcaaggtgcaggagcagcagatggcc
atggccaagcaggggctcctgatgaaccagctggcgctgcagaacggcatgatgggtccc
ggcaacctgaaccagatcgacctgctgggcctctaccagcacatgcagcagatgcagggc
atgggggctaaccctgggccctcaaagggcctgtag
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integrated database retrieval system
