KEGG   Alosa sapidissima (American shad): 121694657
Entry
121694657         CDS       T11137                                 
Symbol
cul4b
Name
(RefSeq) cullin-4B isoform X1
  KO
K10609  cullin 4
Organism
asad  Alosa sapidissima (American shad)
Pathway
asad03420  Nucleotide excision repair
asad04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:asad00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    121694657 (cul4b)
  09124 Replication and repair
   03420 Nucleotide excision repair
    121694657 (cul4b)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:asad04121]
    121694657 (cul4b)
   03400 DNA repair and recombination proteins [BR:asad03400]
    121694657 (cul4b)
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:asad04147]
    121694657 (cul4b)
Ubiquitin system [BR:asad04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul4 complex
    Cullin
     121694657 (cul4b)
DNA repair and recombination proteins [BR:asad03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Cul4-DDB2 complex
      121694657 (cul4b)
    TCR (transcription coupled repair) factors
     Cul4-CSA complex
      121694657 (cul4b)
Exosome [BR:asad04147]
 Exosomal proteins
  Exosomal proteins of other body fluids (saliva and urine)
   121694657 (cul4b)
SSDB
Motif
Pfam: Cullin Cullin_Nedd8 SecA_SW
Other DBs
NCBI-GeneID: 121694657
NCBI-ProteinID: XP_041930828
LinkDB
Position
20:complement(3368630..3385096)
AA seq 856 aa
MFPTGLPSPNPPPPTQEARPAASDVNSDSSLTSSKKRKINSSEKEDIDSISSSPKAICNS
SSSCSSTSQHIQKKLRFEDPAEIIGLDVKMAEESSPTASCSNKTKNVFLAGGVGHHANGL
TKSTGSTTFSNSKPGAAKKLVIKNFKEKPKLPENYTQETWQKLKEAVEAIQNSTSIKYNL
EELYQAVENLCSHKISSKLYKQLRSVCEDHIKAQIDQFREDALDSVLFLKKIDKCWQDHC
RQMIMIRSIFLFLDRTYVLQNSMLPSIWDMGLELFRFHIISDMKVQSKTISGILLLIERE
RSGEAVDRSLLRSLLSMLSDLQIYQDSFEQRFLEETNRLYATEGQRLMQEREVPEYLHHV
NKRLEEEADRVITYLDQSTQKPLIASVEKQLLGEHLTAILQKGLNHLLDENRIQDLSLLY
QLFSRVRGGVQALLHHWIEYIKAFGSTIVINPEKDKTMVQELLDFKDKVDYIIDVCFMKN
EKFVNAMKEAFETFINKRPNKPAELIAKYVDSKLRAGNKEATDEELEKMLDKIMIIFRFI
YGKDVFEAFYKKDLAKRLLVGKSASVDAEKSMLSKLKHECGAAFTSKLEGMFKDMELSKD
IMVQFKQYMQCQNIPGNIELTVNILTMGYWPTYVPMEVHLPPEMVKLQEIFKTFYLGKHS
GRKLQWQSTLGHCVLKAEFKEGKKELQVSLFQTLVLLMFNEGEEFSLEDIKLATGIEDSE
LRRTLQSLACGKARVLTKIPKSKDVEDGDKFSCNDDFKHKLFRIKINQIQMKETVEEQAS
TTERVFQDRQYQIDAAIVRIMKMRKTLSHNLLVSEVYNQLKFPVKPADLKKRIESLIDRD
YMERDKENPNQYNYVA
NT seq 2571 nt   +upstreamnt  +downstreamnt
atgtttccaacaggtttaccttcccctaatcccccaccgccaacccaagaggctagaccg
gcagcttctgatgttaatagcgatagtagtcttacgtcttctaagaagagaaaaataaat
agctctgagaaagaagacatcgattcaatatcttcgtccccaaaagccatttgcaattct
tcttcgtcctgttcttccacctcccagcatattcagaagaagttaaggttcgaagatcca
gcagaaatcattggactggatgtgaaaatggctgaagagtcttcaccgactgcatcgtgt
tctaataaaactaaaaatgtgttcttggctggaggtgttgggcaccacgcaaacggactg
acgaaatccaccggatccaccacgttttctaacagtaaaccgggagccgcaaaaaaacta
gtcatcaagaacttcaaagaaaaacccaaattaccagagaactacacacaagagacctgg
caaaagttgaaggaggctgtcgaggccattcagaacagcacttcgataaagtacaatctg
gaggagctgtaccaggcagttgaaaatctttgctcccataaaatatcatcaaagctctac
aaacaacttaggtctgtgtgtgaagatcacatcaaggcacagatcgaccaattcagagag
gatgcactggacagtgttcttttcctgaagaagattgataaatgttggcaggatcattgt
agacaaatgatcatgattagaagtatatttttgtttttggaccgcacttatgttttacaa
aattcaatgctaccatcaatttgggacatgggcttggagcttttccggttccacattatc
agcgatatgaaggtgcagagcaagactatctctgggatcttgctcctgatcgagagggag
cggagcggtgaggctgtggaccgcagtctgctccggagcctcctcagcatgctctctgat
ctgcagatttaccaggactcgtttgagcagcgctttttggaggagacgaatcgcctatat
gccacagaaggacagaggctgatgcaagagagagaggttccagagtaccttcatcatgtc
aacaagcgtttggaagaggaggcggacagggtcataacttatttggaccagagcacacaa
aaaccgctgattgcctctgtggaaaaacagcttctgggggagcatctgacggcaatctta
cagaaaggcttgaatcacttgctggacgagaaccggatccaggacctgtccctcctctac
cagctcttcagtcgtgtacgagggggcgtacaggctcttctccatcactggattgagtac
atcaaggccttcggaagcacaattgtcatcaaccctgagaaggacaagaccatggtccag
gagctgctggactttaaggacaaggtggattacatcattgatgtgtgcttcatgaaaaat
gagaagtttgtgaatgctatgaaggaggcctttgagaccttcatcaacaaacggccaaac
aagcccgctgagctaatagcaaagtatgtcgactcaaagctgagggcaggaaacaaggag
gctactgatgaggagctagagaaaatgctggacaaaatcatgatcatcttcaggtttatc
tatggcaaagatgttttcgaggccttttacaagaaagacctggccaagaggctactggta
ggaaagagtgcctctgtggatgcagagaagtccatgctgtcaaaattaaaacatgaatgt
ggtgctgcattcaccagcaaactagaaggcatgttcaaggacatggaattatcaaaggat
attatggtgcagttcaaacagtatatgcagtgtcagaacatccctggaaacattgagctg
acagtgaacatcctcaccatgggctactggcctacctacgtacccatggaagtccatctg
cccccagagatggtgaagctgcaggagatcttcaaaacgttctacctgggcaagcacagt
ggcaggaagctacagtggcagtccacattagggcactgtgtgctgaaggctgagttcaag
gagggcaagaaggagctgcaagtgtcgctgtttcagacactggtgctacttatgttcaac
gaaggagaggagttttccttggaggacattaaacttgcaacaggaattgaggacagtgaa
ctcaggcggactctgcagtccctggcttgtgggaaagcccgtgtactcaccaaaatcccc
aagagcaaagatgtggaagatggtgacaagttctcctgcaatgatgactttaaacacaag
ctcttcagaatcaagatcaaccagatccaaatgaaagagacggtggaggaacaagccagc
actactgagagggtcttccaagaccggcagtaccagattgacgcagccatcgtccgcatc
atgaaaatgaggaagactctcagccacaaccttttggtgtcagaggtctataatcaactc
aagttcccagtgaagcctgctgatttaaagaagagaatagaatcgctcatcgacagggac
tacatggaacgagacaaggagaatcctaaccagtacaactacgttgcttag

DBGET integrated database retrieval system