Alosa sapidissima (American shad): 121694944
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Entry
121694944 CDS
T11137
Symbol
polr1a
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
asad Alosa sapidissima (American shad)
Pathway
asad03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
asad00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
121694944 (polr1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
asad03021
]
121694944 (polr1a)
Enzymes [BR:
asad01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
121694944 (polr1a)
Transcription machinery [BR:
asad03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
121694944 (polr1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_1
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
121694944
NCBI-ProteinID:
XP_041931278
LinkDB
All DBs
Position
20:21428660..21448852
Genome browser
AA seq
1693 aa
AA seq
DB search
MLFAKELPWRRLEGMSFGLYSSDEIRKLSVKTITNPQILDNVGNPACNGLYDLSLGPSDN
KEVCSTCMQDYNNCPGHFGHVELPLPVFNPLFFDKLYLLIRGSCLVCHTLSCTRATIHLL
LCQLKLLDVGALKEVYELENVLNQFLETNRQATGTEIQEVLEEHCAPILQAERGQTAHHT
PIKHVCEKKGSLITNFWRAHMTPRRCPNCKAARAIVRREHNSKLIITSAPSKKTDAEEEA
QISKRGYLTPSLAKEHILNLWEKEGFFLKHLFSGLDSEGIQNVFKPDLFFLDILLVPPSR
YRPINRLGDQMFTNGQTVNMQAVMKDNVLIQKLLALMATEKAKAIEDTEMEMEKETMEAR
QIDQTFLSGMPGQTPTDKLYNIWVRLQSHVNIVFDSDMDKLMSEKFPGVRQLLEKKDGLF
RKHMMGKRVDFAARSVICPDMYISTSEIGIPMVFATKLTYPQPVTPWNVKELRQAVLNGP
NVHPGAAMVINEDGSRTILSSTSLTQREAIAKQLLTPSTGTQRIPMKIVNRHIKNGDVLL
LNRQPTLHRPSIQAHTARILPGEKVLRLHYANCKAYNADFDGDEMNAHFPQSELSRAEAY
TLVSTDQQYLVPKDGKPLAGLIQDHMVSGTSMTIRGCFFTREQYTALVYRGLTDKVGRVK
LLHPAILKPCPLWTGKQVVSTLLLNVIPENHIALNLNGGAKIPSKAWIKVAPRAVPGYQP
DSMCDSRVVIRQGELLLGVLDKAHYGSSAYGLVHCCYELYGGQTSGKLLTCLARLFTAYL
QLYRGFTMGVEDILVQPAANTERTKIIEESITCGAKALKAAFNLPASAAEAEARDHWQNA
HLNPDQRDFNMVDLKFKEEVNQVNNNINKVCMPMGLHRSFPENNLQLMVQSGAKGSTVNT
MQISCLLGQIELEGRRPPLMPSGKSLPCFQPYDSAPRSGGFVSGRFLTGIKPPEFFFHCM
AGREGLVDTAVKTSRSGYLQRCVIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDGLDIPKT
QFLLPRQFPFIKDNYEVIRKSKCLDEVLSKMDSSVSANHQKAIRKWRAKREHVSPREGAF
LLFSQKKLAKMKAQAANAAMTNGREMATLQLVERWAGLDEPNRMKYLKKTSRCPDPCLAV
HRPDISFGSVSETFESIVESYLSKLENSPNRNDTKDLDADRLRDLLQMKWQRALCDPGEA
VGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMIASSKIKTPMMSIPVLN
TKKALKRVKVLKKKLNRVCLAEVLHKVDVVETLRFDGKKAQQKNRVFNVAFHFLPPERYQ
QDKMLTPQQILRYMENRFFRILLEAIKKLSIKLASLTAVDSRKATRRDEDQHGETAAPAA
PAEDDGEANVEQEMRIVDDEAEEGDADASDAKRREKQEEEVDYDSEEGGEEEEAEAEPAE
EEGSPDEESRESPAPDHAELPSGPEGTESQDQMRVNAVLAIGSTIESYKYDSVNGLWCEA
TIILPVTNVHFDLTSLIVTQAQNAVIVETKGITRCLLNEVTKKDGSKETVLNTEGINMQE
IFKHGDILDLNRLYSNEVHAMANTYGIEVALRVIEKEIKDVFAVYGIEVDPRHLSLVADY
MCFEGVYKPLNRFGIRSNSSPLQQMTFETSYKFLKDATMLGSHDQLRSPSACIVVGKVVK
GGTGIFDLKQPLQ
NT seq
5082 nt
NT seq
+upstream
nt +downstream
nt
atgctttttgcaaaggaactaccatggaggcggctcgagggcatgtcgtttggcttgtac
tcttcagatgaaataagaaaattgagtgtaaaaaccatcacgaatccccagattctggac
aacgttggcaaccctgcgtgtaatggcctgtatgatctatcacttgggccctctgataac
aaagaagtgtgctcaacctgtatgcaggactataataactgccctggccactttggacac
gttgaattgcctttgcctgtcttcaaccctttattttttgataaactttacctgctcatc
cgaggatcctgtttagtttgccacaccctcagctgcactagggctaccattcatctcttg
ctttgccagttgaagctgctggatgttggtgcactgaaagaagtctatgagctagagaat
gttctcaatcagtttttggaaaccaatcgtcaagctactggtaccgagattcaagaggtc
ttagaggaacactgcgcaccgattctacaagcagaaagaggtcaaacggcgcatcacact
ccaatcaagcatgtgtgtgaaaagaaaggcagcctcatcacaaatttctggagagctcac
atgactccaaggcgatgcccgaactgcaaggcagccagagcaatagtgcggagagagcac
aacagcaaactcatcatcacaagtgccccgtccaagaagaccgatgcagaagaggaagct
cagatttccaagcggggatacctgacgcccagtttggctaaggagcatatcctaaatctt
tgggaaaaggaagggttcttcctgaagcacctgttctctggactggattctgaaggcata
caaaacgtcttcaaaccagatctgttcttccttgacattctcctggttccaccgagcagg
taccggcctatcaaccgcctgggagaccagatgttcaccaacggtcagacagtaaacatg
caggctgtgatgaaggacaacgtcctgattcaaaagctactggctctcatggccacagag
aaggcaaaggcgatcgaagacactgagatggagatggagaaggagacaatggaggccaga
cagatagaccagacgtttctgtctggcatgcctggtcagacccccacagacaagctgtac
aacatctgggtccggctgcagagccacgtcaacatcgtgtttgacagcgacatggacaag
ctgatgtctgagaagtttcctggcgttcggcagcttctggagaagaaggacggtctgttc
aggaagcacatgatggggaagcgcgtggactttgctgctcgttctgtcatctgtccagac
atgtacatcagcaccagtgagattggcatcccaatggtgtttgccaccaagctgacgtac
ccgcagccggtgacgccatggaacgtaaaggagcttcggcaggcggtgctcaacgggccc
aacgtgcacccgggcgccgccatggtgatcaacgaggacggctcccgcaccatcctgagc
agcaccagcctaacccagcgcgaggccatcgccaagcagctgctcacgcccagcaccgga
acacagcggatccccatgaagatcgtgaaccggcacataaagaacggcgatgtcctgctc
ttgaaccggcagcccactctccacaggccgtccatccaggcccacacggcccgcatcctg
cccggcgagaaggtcctgcggcttcactacgccaactgtaaggcctacaatgcagacttt
gacggcgatgagatgaacgcccacttccctcagagcgagctgagcagggcagaggcctac
acgcttgttagcactgaccagcagtacctcgtccccaaggacggaaagcctctggctggc
cttatccaggaccacatggtgtccggcaccagcatgaccatccgaggctgcttcttcacc
agggagcagtacacagcgctggtctacaggggcctcacagacaaagtgggccgagtgaaa
ctgctccaccccgccatcctcaagccctgtcccctgtggactggcaagcaggttgtgtcc
acccttctcttgaacgtcatccccgaaaaccacattgccctgaatttgaatggcggggcc
aagatccccagcaaggcctggatcaaagtggccccccgtgctgtgcctggataccagcct
gatagcatgtgtgactctcgggtggtcattcgccagggggagctgttgcttggggttctg
gacaaggctcactacggcagctcggcctacggcctggtgcactgctgctacgagctgtat
ggcggacagaccagtgggaaactgctgacctgtctggcgcgcctcttcaccgcctactta
cagctgtaccgcggcttcaccatgggagtggaggatattctagtacagcctgccgccaac
acagagaggacaaagatcatcgaagagtctattacatgtggagccaaggctctgaaagcg
gccttcaacctccctgccagtgctgcggaggcggaggcccgggaccactggcagaatgcc
catctcaacccagaccagagagacttcaacatggtggacctcaagttcaaggaagaggtc
aaccaggtcaacaacaacattaataaggtgtgtatgcctatgggcctccataggtccttc
cctgagaacaacctgcagctgatggtgcagtctggagctaagggctccactgtcaacacc
atgcagatctcctgcctgctgggtcagattgagttggagggcagacgtccaccactgatg
ccctctgggaaatccctgccctgtttccagccttatgacagcgctcctcgctcaggtggc
tttgtttctggaaggttcttgaccgggattaagccaccggagttcttcttccattgcatg
gctggccgcgaaggtcttgtcgacacagctgtaaagaccagtcgatcaggctacctgcaa
agatgtgtgatcaagcacctggagggtctggtggttcagtatgacctgaccgtgagggac
agtgacggtagcgtggtgcagttcctttatggggaggatggcctggacattcccaagacc
cagttcctcctgccgcgccagttccccttcatcaaggacaactacgaggtcatcaggaag
tccaagtgcctggatgaagtgctgtccaagatggactccagcgtctcagccaatcatcag
aaggccatcaggaagtggagggccaagcgagagcacgtatccccccgagagggagccttc
ctgctcttctcgcagaagaagctggccaagatgaaggcccaggctgcaaatgctgcgatg
accaacggccgagagatggccactctgcagctggttgagcggtgggccggtttggatgag
cccaaccggatgaagtatctgaagaagacgtcccgttgccccgacccctgcctagctgtg
caccgacccgacatctccttcggctccgtgtccgagacattcgaatctatcgtggagtcc
tacctcagcaagttagagaatagtccaaaccgcaacgataccaaggaccttgatgccgac
aggctgagggatctgctgcagatgaagtggcagagggcactgtgtgaccccggggaggct
gtagggctgctggctgcccagagcattggggagccgtccacccagatgaccctgaacacc
ttccacttcgccggcagaggagagatgaacgtcaccctcggtatccccaggttgcgtgag
atcctgatgatcgccagctccaaaatcaagactcccatgatgagtatccctgttctgaac
accaagaaagccctgaagagggtgaaggtcctcaagaaaaaactcaacagagtgtgcttg
gctgaggtccttcacaaggtggatgtggtggagacactgcggtttgatggcaaaaaggcc
cagcagaagaacagagtgttcaacgtggctttccacttcctgccaccagagcgctaccag
caggacaagatgctcaccccgcagcagatcctgcgctacatggagaacaggttcttcaga
atactgctggaagctatcaagaagctgagtatcaagctggcctccctcaccgctgttgac
tcacgcaaagccacgcggagggatgaggaccagcacggggagacggctgctcctgctgct
cctgctgaggacgatggagaggcaaacgtagagcaagagatgaggatcgtcgacgacgaa
gcagaagaaggagatgctgacgcctccgatgccaagaggagagagaaacaggaggaggag
gtggattacgacagtgaagagggcggtgaggaggaggaagcagaggcagagcctgcggag
gaggaggggtcgccagacgaggagtcccgagagtctccggccccagaccatgcagagctc
cctagcgggccggaggggacagagagtcaggaccagatgagggtgaacgctgtcctggcc
attggcagcaccatagagagctacaaatacgacagcgtgaatggactctggtgtgaggca
accatcattctcccagtcactaatgtgcactttgacctgacatcactcatcgtgactcag
gctcagaatgccgtcattgtggagacgaaagggatcacgcgctgccttctgaatgaggtc
accaaaaaggacggttccaaagagaccgtcctcaacacagagggcataaatatgcaagag
atctttaaacatggtgatattcttgatttgaataggctgtactctaacgaagtccatgcc
atggccaatacatatggcattgaggtggccctgcgcgttatcgaaaaggaaatcaaagac
gtgtttgctgtgtatggtattgaggtggaccctagacacttgtctctggtggctgactac
atgtgctttgaaggtgtttacaaacctctgaaccgatttggcatcagatcaaactcctct
cccctacaacagatgacctttgaaacgagctacaagttcctcaaggacgccactatgttg
ggctcgcatgaccagctgcgatctccctccgcttgcatcgtagttggaaaagttgtcaaa
ggaggaacagggatttttgatttgaagcaaccactgcagtag
DBGET
integrated database retrieval system
