Alosa sapidissima (American shad): 121695186
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Entry
121695186 CDS
T11137
Symbol
cica
Name
(RefSeq) protein capicua homolog isoform X1
KO
K20225
capicua transcriptional repressor
Organism
asad Alosa sapidissima (American shad)
Brite
KEGG Orthology (KO) [BR:
asad00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
asad03000
]
121695186 (cica)
Transcription factors [BR:
asad03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
121695186 (cica)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HTH_Cic_C
DUF4819
HMG_box
HMG_box_2
Motif
Other DBs
NCBI-GeneID:
121695186
NCBI-ProteinID:
XP_041931701
LinkDB
All DBs
Position
21:complement(19759550..19783417)
Genome browser
AA seq
2592 aa
AA seq
DB search
MKPLKKGGRPSPPSTRAKASRRRGQPDSSPEQDQSKASPPSPKRHTTPPSSHSESSHEEA
PRITVTPDRDESLSREGDSTKAVVTVAEERPSSCRSSDSNSSAASSNSSPNPSASRKTAT
FKARVPKKKYTSEHCSSSAGITTAATGNHGNASTPPLSSNGDSSSGSGAHNGTVATAVAT
AAQPQVSTANGQQTPSSTQTPPSQPSAGNDPHNHSQSGAAPVSAGQYGDRDTGERPPVAS
PPRCSSTDTASEHSADLEVTAAARMPAPSEPQPSTDDRPHQQQQQQHPPAPPPAHCNSNP
MQDSLAGGLAEALAKGLKNQRVLARQGSGVFRAGVVRHVSGEQGSVEVQLNGEKGISYYP
FQPSGGAVDLVLDSPPPGAAQVAIGTHVCVPFGGGHEASEGAQQLYREGLVTQVDPHPAV
SFPYRVLLRDEPGAAATAATAAGHDRSPQEEGGGASPSPVQAVWVSRQSLRLLVPPWDLD
PGSRAWEDREDMEVERELSHLITAPLYTRALPPHPASAPPSSVSYSSSASSTIAAAGGLM
MTSVLNMAGGWEREREQEMERERERQRERERERERERERERERDREQERLQQQHHQQQQT
PEEDMEVTIFNSTPMREATIGAVPGGKPLGVPQHRHILSKPPYLSVVRNIGPPLGPHLAL
NPHGPQSSVLLGLDAGTPVISSAPQLPPLPPSSRGVLDKPPSANSHGSSGGSGSGGGSGS
GSGPRSRTPLTAAQQKYKKGDVVCTPTGIRKKFNGKQWRRLCSREGCSKESQRRGYCSRH
LSMRTKEMEAGGGGGPGLGRDRSGASSTGTLTPSDLRLGSGRTSSEFDWDETSRDSSEAS
SRGGDSRPRLVLPSLLPHDLSRDLTRDLSRFDFDECEAANMLVSLGSSRSGTPSFSPVSN
QSPFSPAPSPSPSPLFGFRPANFSPITPPSLTPRRPRHLSGTKLGTPGSDRERHLSGVVP
TFQTNLTFTVPMSPSKRKPDIQPPTLPLAPSAPHDYGKPEVQQAPLVVGDPTLGLQGFRV
LSPQSQPPTPSFSRPRSAASRPPSSAASTPPPMLVSPTPPSPLPQEPSPRRGMPLRDSPV
IVRNPDVPLAKFSEGPLSGRRGSGGTVGGGGAGMGGAGGGGGGAGGGGGGSRPRDNGGQP
PHLTGTLQAPVPINGASATNGAVLLRNPTSTLVLVTSTQSLTTASSTRSVHVGSVAVSGA
GAGPAVASGGMGEGRERERNPGGHGDTHGGVLPQPVACHPTPTALLPLIVPAESPQPAPR
KDIIMGRPGTVWTNVEPRSVPVFPWHSLVPFLEPSQSNSSGAQPADGQPLVNQSKEPRCG
VALVSDGRSGQSSTERGSPSRPPPSAEDPPPEREAGDSETESDADDLFLPGVSQDPAPST
VPAKRRTQSLSALPRDGDKKREKDHIRRPMNAFMIFSKRHRALVHQRHPNQDNRTVSKIL
GEWWYALGPKEKQKYHDLAFQVKEAHFRAHPDWKWCNKDRRKSLSEGRGTPGAKDPRERS
ASESTEAQAQGGDQKGPVSSWPPGSERRLGPLGGQHPRPRAFSQSAVHSLERREQERDLE
KMCQEGGSGFRPRPSASSGLQRGASEDVTSDEERMVICEEGDDDVIDDSFPEGSIDLKCK
ERVTDSDEENASADEADGKRAFQPVVRSSRSYSPGSDPSKGAGSRGRGNGHSQERMINMA
GGLDVSGRPKEVKEEEGGEGLGGGGGVSQPSAHSLSSSGPTHHPGNGVTQVLGPVRMAST
VVTSVVRPVASTPVPIASKPCNDGGLPADKKTKLLIAAGGGGGGGGGGAGGGGGGVTIAT
GGGYFPSSSPIPQGGGGGVVTSLLLGGAFPSQPTVQLLTQPQTLPCPPVGSPPTHANGGT
LPLFLPASSITPPGGRVGKPVTQVQYILPTLPTNPKSPSPQQHGSVLTLPTAPPTHMSLA
NGVHSGAGPGIRYASVPAMGGLSPGGGGVQAQSPVLQSKMLVPMATVRTGSTPPQPISLV
APQLPVQNGAQPGSKIIQIAPMPVVQTNVHHSAAVHPGNSFPVSMGTATVMATGSAPPQT
VLLTPPPTRITYVQSTTGVVAPMPLVSTATVSTPQQLPPPSGPAFLPSSLATLGFTAIAP
AGQALVQPIAAGQPPLLAPAPPPNCPSQPAVANGAPRQVLTAIYPAPSVTLATGMVSVAT
VPPNMTLAPSSSSPDSPSSGLQTGIAAPAPVSQLSDPMKVQPHTDGQVGSSPVAMEIERQ
SVLEKHADGEAQVETPGHTTTTAQTGSTALHPTTTGRHGSMAQDAANQSETERERKMEEG
GVSWRDQVAEGQGSERAPKGHSNDESGREDHGKEVRRKESNSPAPPPSGLEPPPPPPQND
RDNSTVKKAKSRPPPLKRTFEPVDKVMSGSYFEERLAELPEFRPEEVLPSPTLQSLATSP
RAILGSYRKKRRNSTDLDSADDPSSPRRKSRRLSSCSSEPNTPKSAAKCEGDIFTFDRAG
ESEDMLVEPGERAPYSSLRRTLDQRRALVMTLFHDYGFFPSAQATAAFQASHSDIFPTKV
CLQLKIREVRQKIMQTATPGASEGPGPTGADSASTPGPSSAPLREESGAESDERGSGHEE
TNNTGESQDSTR
NT seq
7779 nt
NT seq
+upstream
nt +downstream
nt
atgaagccactgaagaaagggggcagaccctcgcccccgtccacccgcgccaaggcgagt
aggagacggggtcagcccgacagcagtcccgagcaggaccagtccaaagcctcccccccc
tccccgaaaagacacacgacgcccccctcgtcccactcggagtcgtcccatgaggaggcc
ccccggatcacggtgaccccggaccgggatgagagcctctcccgtgagggcgattctacg
aaggcggtagtgacagtggcggaggagcgcccgagcagctgccggtcatcggacagcaac
agcagcgcggccagctccaacagcagccccaacccgtcagccagccgcaagacggccacc
ttcaaggcacgtgtgcccaagaaaaagtatacatcggagcactgctcctcgtccgccggc
atcaccacggccgccaccggaaaccatggcaacgccagtacgcctccgctcagtagcaac
ggtgacagcagcagcggcagtggtgcacacaatggtaccgttgccacggccgtcgccacg
gcagctcagcctcaggtcagcactgccaacggccagcagacaccatccagcacacagacg
ccccccagccagccgtcagctggcaacgacccccacaaccacagccagagcggggcagcc
cctgtcagcgccggccagtacggggacagagacacgggggagaggcctccagtggccagc
cccccacgctgctcctccacagacactgccagcgagcactcggccgacctggaagtgacc
gccgctgcgcgcatgccggcaccctcagagccccagcccagcacagacgatcgcccccac
cagcagcagcaacagcagcaccccccagcgccacccccagcacactgtaactccaatccc
atgcaggacagcctggccggaggtctggccgaggccctggccaaggggctgaagaaccag
cgcgtgctggcgcggcagggctccggggtgttccgggcgggcgtggtgcggcacgtgagc
ggggagcagggcagcgtggaagtccagcttaacggggagaagggcatcagctactacccc
ttccagcccagcggaggcgccgtggacctcgtgctggactccccgcctccgggagccgcg
caggtggccatcgggacccacgtgtgcgtgcctttcggtggcggccacgaggccagcgaa
ggggcccagcagctgtaccgcgagggcctggtgacgcaggtggacccccacccagccgtg
tccttcccctaccgcgtgcttctgagggacgagcctggagccgccgccaccgccgccact
gccgccggtcacgacagaagtccacaggaggagggcggaggagcctccccgagccccgtg
caggccgtgtgggtgtcccgccagagcctgcgcctgctggtgcccccctgggacctggac
ccgggcagccgcgcctgggaggaccgcgaggacatggaagtggagcgcgagctctcgcat
cttatcacggcgccgctctacaccagggcgctgccgccccacccggcgtccgctccgccg
tcctcggtctcgtactcctcgtccgcttcctcgaccatcgcggcggccgggggcttgatg
atgacgtcggtgctcaacatggcaggcggctgggagcgcgagcgggagcaagagatggag
agagagagggagcggcagagggaacgagagagggagagggaaagagagagggagcgagag
agggagagggacagagagcaggagagactccagcagcagcaccaccagcagcaacagacc
cccgaggaggacatggaggtgaccatcttcaactcgaccccgatgagagaggccactatt
ggggccgtgcctggaggaaagcccctcggggtcccccagcaccggcacatcctctccaag
cctccctacctatccgtggtgcgtaacattggaccccccctgggccctcacctggccctg
aacccgcacggaccccaatcgtctgtcctgctgggcctggacgcaggcaccccggtcatc
tcctctgcacctcagctgcccccgcttccgccttcctcgcggggagtcctggacaagcct
ccctccgccaactcccacggatcctcggggggctctggttcgggtggcggctcggggtca
ggatcaggcccgcggtcccggactcctctgacggcggcgcagcagaagtacaagaagggc
gacgtggtgtgcaccccgaccggcatacgcaagaagttcaacggcaagcagtggcgcagg
ttgtgctcgcgcgagggctgctcaaaagagtcacagcgcaggggctactgctcccgccac
ctgtccatgcgcaccaaggagatggaggctggaggcggcggggggccgggcctgggccgc
gaccggagcggagccagcagcacgggcacgctcacgccctccgacctgaggctgggcagt
gggcgcaccagcagcgagttcgactgggacgagacgtccagagacagcagcgaggccagt
agccgtgggggcgactctcgtccgcgcctcgtgctcccctcgctccttccccacgacctc
tcgcgcgacctcacccgcgacctgtcgcgcttcgacttcgacgagtgcgaggcggccaac
atgctggtgtcgctcgggagctcgcgctcagggacgccctcgttctcgcccgtttccaac
cagtcgcccttctcgccggccccatccccctcgccctcacccctcttcggcttccggccc
gccaactttagccccatcacgcccccctccctcacgccgcgccggccgcgccacctgagc
ggcaccaagctgggcacgccgggctcggaccgtgagcgccacctgtccggcgtggtgccc
accttccagaccaacctcaccttcactgtgcccatgagccccagcaagcgcaagcccgac
atccagcccccgacgctccccctggccccctctgccccgcacgactacggcaagccggag
gtccagcaggcccctctggtggtgggcgacccaacgctcgggcttcagggcttcagggtc
ctgtccccccagagccagcccccgaccccgtccttctcacggccccgcagtgccgccagc
cgccccccgtcctccgccgcctccacccctccgcccatgctggtgtcccccacgccgccc
tcccccttaccccaggagcccagccctcgccggggcatgccgctccgcgactcccccgtc
atcgtgcgcaacccggacgtcccgctggccaagttcagcgagggccctctgagtggccgg
agaggcagcggagggaccgtgggaggaggcggagccggcatgggtggtgctggcggtggt
ggcggtggggctggcggaggaggaggaggaagtcgcccgcgagacaacggtggccagccc
ccgcacctcaccggcacgctgcaggcccccgtgcccatcaacggcgccagcgccaccaac
ggagccgtgctcctgcgcaaccccacctccaccctcgtgctggtcacctccacccagtcg
ctgaccaccgcctccagcacccgctcggtccacgtgggctcggtcgctgtctccggcgct
ggagccggtccagcagtggccagcggcggcatgggagagggcagggagagagagaggaac
cccggggggcatggagacacccatggaggggtgctgccccagccggtggcctgccaccca
actcccactgccctgctgcccctcatcgtgcccgcagagtccccacaacctgccccacgc
aaggacatcatcatgggacgtcccggtacagtttggaccaatgtggaaccacgctcagtc
ccagtctttccttggcattcattggttccctttctggagcccagccaatcaaattcgtct
ggagcccagcccgctgatggccagccactggtgaatcagagcaaagagccccgatgtgga
gtagctcttgtgagtgatggccgcagtggccagtcaagcacagagagaggctcaccgtcg
cgccctcccccttctgctgaggaccctcccccggagcgcgaggcaggagacagcgagaca
gagagcgatgcagatgacctgtttctaccaggtgtgtcccaggacccagccccttccaca
gtcccagccaagaggcgcacacagtccctcagtgccctccccagggatggagataagaag
agggaaaaagaccacatccgacggcccatgaatgccttcatgatcttcagcaagcgccac
cgggcactggtgcaccagaggcaccccaaccaggacaaccgcacagtcagcaagatcctg
ggagagtggtggtatgcgctggggcccaaggagaagcagaagtaccacgacctcgctttc
caggtgaaggaagcccacttcagagcacacccagactggaagtggtgtaataaagaccgg
cggaagtctctttctgagggccgtgggacccctggggccaaagaccctcgggagcgcagc
gcctctgagagcacagaggcccaggctcaaggaggggatcagaagggaccagtgtccagc
tggccccctggatcggagcggcgcttggggcctctgggaggacagcaccctcggccccgc
gctttctcccagagtgccgtgcacagcctggagaggagggagcaagagagagacctagag
aagatgtgtcaggaaggaggaagcgggtttcgcccgcggccgtccgcctcgtctggactg
cagcggggggccagtgaggacgtgaccagcgacgaggagcgcatggtcatctgtgaggag
ggtgacgatgacgtcatagatgactccttccccgagggctctatagacctgaagtgcaag
gagagggtgacagacagtgatgaggagaacgcgtctgcagatgaggccgatggcaagcga
gctttccagcctgttgtccgttcgtcgcgttcctactcccctggcagtgacccatccaag
ggtgcgggcagccgaggccgaggcaacggccatagccaagagaggatgatcaacatggcg
ggaggactggacgtcagcggtcgacccaaggaggtgaaagaagaggagggtggagaagga
ctaggtggaggaggaggggtgtcccagccttctgctcactccctctcgtcctccggcccg
actcaccaccccgggaacggcgtgacccaggtgctggggccggtgcggatggcgtccacc
gtggtgaccagcgtggtgcgtcctgtggccagcaccccggtgcccatcgccagcaagccg
tgcaacgacggcggcctgccagccgacaagaagaccaagttgctgatcgccgccggagga
ggaggaggaggaggaggaggaggagcaggaggcggcggaggaggtgtcaccattgccact
gggggtgggtacttcccctcgtcctctcccataccgcagggtggcggtggcggtgtggtc
accagcttgttgctgggaggggccttccccagccagcccactgtccagctcctcacccaa
ccccagaccctcccctgcccgcccgtcggtagcccccctacccacgccaacggcggcacc
ctcccccttttcctccccgcctcctcgatcaccccccccggcggcagggtgggcaagccg
gtcactcaggtgcagtacatcctgcccaccctgcccaccaaccccaagagcccctccccg
cagcagcacggcagcgtcctcacgttgcccacagccccgcccacccacatgtccttggcc
aatggtgtgcattcgggggcaggaccagggataagatatgcctcagttcctgcaatgggc
gggctcagcccaggaggaggaggagttcaagcacagtccccagtattgcaaagcaagatg
ctggttcccatggcgacagtgagaacgggctccacgcctccgcagcccatctctctggtc
gccccacaacttcctgttcaaaatggtgctcaaccaggaagtaagatcattcagattgct
cccatgcctgtggtccagaccaacgttcaccactcagcagcagtgcaccctgggaattcc
ttccctgtctccatgggaacagcgactgttatggctacgggctccgctcccccacagact
gttctgcttactcctcctcccacaaggatcacttatgtgcagtccaccacaggcgtggtt
gccccaatgccactggtctctacagcgacggtctccactccgcagcagctcccgcctccc
tcaggtccagcgttcctgccatcgtccctggcaaccctggggttcactgccatagccccc
gctggccaagccctggtccagccaatcgcagcaggacaaccacccctcttggccccggct
cctccccccaactgtccgtcacagcccgccgtggccaatggagcgccacgtcaagtgctc
acggccatctaccccgcacccagcgtcaccctagcgacagggatggtttctgtggcaaca
gtacccccgaacatgaccctcgccccttcctcctccagtccagactccccctcctccgga
ttgcagacggggatagccgcacctgcaccggtgtcccagctgtcggaccccatgaaggtg
cagcctcacaccgacggacaggtgggctcatcgcccgttgccatggagatagagaggcag
agcgtcctggagaagcacgcagacggagaagcacaggtggaaaccccaggacacaccacc
acaacagcacaaacaggcagcacagccctgcatcccaccaccacaggtcgccatggcagc
atggctcaggatgcagccaatcagagcgagacagaaagagagcggaagatggaggaaggc
ggagtctcatggcgagaccaagtggctgaaggacaggggtccgagagggcccccaagggc
cacagcaatgatgagagtgggagggaggaccatggcaaagaggtgagacgtaaggagtcc
aactcccctgcgcctcctccatcaggactggagcccccacctccacctcctcagaatgac
agggacaactccactgtcaagaaggccaagtcccgccctccgccactcaagaggaccttt
gagcctgtcgacaaggtgatgtcggggtcgtacttcgaggagcgtctggccgagctgccg
gagtttcggcccgaggaggtgctgccttcccccacgctgcagagtctggctacctcacct
cgagccatcctggggagctaccgcaagaagaggaggaactccaccgatctggactctgct
gatgaccccagctctcccaggaggaagagtcgccggctgtccagctgcagctccgagccc
aacacgcccaagagcgccgccaagtgtgagggggacatcttcaccttcgatagagcagga
gaatcggaggacatgttggtggagccgggggagcgcgctccatactcctccctgcgccgc
actctagaccagcggcgggctctcgtcatgacactcttccacgactacggctttttcccc
tcagcccaggccacggctgcctttcaggccagccattcggacatcttccccaccaaggtg
tgcctgcagctgaagatccgcgaggtgcgacagaagatcatgcagacggccacgcctggg
gcctccgagggcccggggccgaccggagccgactccgcctccaccccaggcccgtccagt
gcaccactgcgagaggaaagtggggcggagtctgacgaaagggggagtggtcacgaggaa
accaacaacacaggcgaatcacaggattccaccagatga
DBGET
integrated database retrieval system
