KEGG   Alosa sapidissima (American shad): 121695225
Entry
121695225         CDS       T11137                                 
Symbol
col1a2
Name
(RefSeq) collagen alpha-2(I) chain
  KO
K06236  collagen type I alpha
Organism
asad  Alosa sapidissima (American shad)
Pathway
asad04510  Focal adhesion
asad04512  ECM-receptor interaction
asad04518  Integrin signaling
asad04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:asad00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    121695225 (col1a2)
   04518 Integrin signaling
    121695225 (col1a2)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    121695225 (col1a2)
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    121695225 (col1a2)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   00536 Glycosaminoglycan binding proteins [BR:asad00536]
    121695225 (col1a2)
Glycosaminoglycan binding proteins [BR:asad00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   121695225 (col1a2)
SSDB
Motif
Pfam: Collagen COLFI
Other DBs
NCBI-GeneID: 121695225
NCBI-ProteinID: XP_041931796
LinkDB
Position
21:complement(14351326..14374382)
AA seq 1349 aa
MLSFVDTRILLLLAVTSYLASCQSGAKGPRGDRGPKGPDGKPGKPGLPGPAGPPGPPGLG
GNFAAQYDGAKGPEPGPGPMGLMGVRGPPGPPGSPGPQGFQGHAGEPGEPGQAGAIGARG
PPGPPGKSGEDGNNGRPGKPGDRGTAGAQGARGFPGTPGLPGMKGHRGYNGLDGRKGEPG
AAGAKGENGAHGTPGTPGARGARGLNGERGRAGPAGPAGARGADGNTGPAGPAGPLGAAG
PPGFPGAPGPKGEVGAAGATGPSGPQGARGEPGPNGAVGPAGPTGNPGANGLAGSKGSAG
TPGIAGTPGFPGPRGGPGPQGPAGPSGPRGLAGDPGPVGVKGESGPKGEPGSMGPQGTAG
PAGEEGKRGSTGEQGATGPAGIAGPRGTPGTRGLPGSPGRAGPMGMTGARGASGPSGARG
PPGDSGRAGEPGLTGARGLPGSPGSAGPPGKEGPAGPAGQDGRSGPPGPTGPRGQPGTIG
FPGPKGPAGDNGKPGEKGPTGPTGLRGAPGPDGNNGPAGPVGLSGGSGEKGEQGPSGSPG
FQGLPGPAGPGGEPGKAGDRGIPGDQGASGPAGVKGERGNPGPAGASGPQGAIGARGPAG
TPGTDGGKGEPGAVGPAGQPGHQGAAGMPGERGAAGTPGPKGEKGEGGFRGAEGNVGRDG
ARGAPGPSGPPGPAGANGEKGETGSYGPAGPAGPRGPPGERGEGGPAGPAGFAGPPGADG
QAGARGEKGPAGVKGDAGPPGPAGPAGNSGPLGPSGPAGPPGARGDGGPPGLTGFPGAVG
RAGPTGPAGIVGPPGPTGAAGKDGPRGARGDAGPAGPPGENGMIGPAGLAGDKGSPGEPG
PAGAPGTPGPQGQLGSQGFSGLPGARGERGLPGMAGGLGEPGRLGPAGAPGPRGPPGNLG
MPGMTGPQGEAGREGNPGNDGPPGRPGAAGFKGDRGEPGSNGPAGLPGNPGPAGPAGAAG
RPGNRGEGGPVGAAGAVGPAGARGQSGPAGARGEKGGAGDKGDRGMKGLRGHPGLQGMPG
PNGPPGDSGPAGATGHSGPRGPAGPAGPSGKDGRAGAHGPVGPVGHRGPQGHLGPAGPPG
SPGLPGPPGPAGGSYDVSGGFDEYAADQAALRAKDYEVDATLKSLNTQIDSLLSPEGSKK
NPARTCRDIKLSHPDWSSGFYWIDPNQGCTMDAIKAFCDFSTGQTCIYAHPESIARKNWY
RSSQEKKHTWFGETINGGTEFTYNDETMSTQTMATQLAFMRLLANQAVQNITYHCKNSVA
YMDAENGNLRKAVLLQGSNDVELRAEGNSRFTFNVLEDGCTRHTGQWSKTVIEYRTNKPS
RLPILDIAPLDIGGADQEFGLDIGPVCFK
NT seq 4050 nt   +upstreamnt  +downstreamnt
atgctcagctttgtggatacccggattctgttgctgcttgcagtaacttcatacctagca
tcatgccaatcgggggccaaaggacccagaggtgaccgggggcctaaaggccccgatggt
aaacccggcaaacctggacttcccggccccgctggcccccctgggccccctggacttggt
ggaaactttgctgctcagtatgatggagctaaaggacctgaacctggccctggacccatg
ggtctgatgggagttagaggcccacctggacctcctggttcccctggaccccaaggattc
caaggacatgctggagagcccggagagcctggacaggctggtgctattggcgctcgtggc
ccccctggacctcctggcaagtctggcgaggacggtaacaatggaagacctggcaagcct
ggagatagaggaactgctggtgctcagggtgcccgtggtttccctggaactcccggactc
cccggaatgaagggacacagaggttacaacggacttgatggacgcaagggagagcctgga
gctgctggagctaagggtgagaatggtgcccatggtacccctggaacccccggagcaaga
ggtgctcgtggtctgaatggcgagagaggtcgcgctggccctgctggcccagctggtgct
cgtggtgctgatggcaacactggacctgccggccctgctggtcccttgggagcagctgga
cctcctggtttccctggtgctcctggtcctaagggagaggttggagctgctggtgctact
ggaccttctggacctcagggagccagaggtgagcctggtcccaatggagctgttggcccc
gctggtcctaccggaaatcctggagctaatggtctggctggatccaagggatctgctggc
acccctggaattgctggtacccccggattccccggcccaagaggaggacccggacctcag
ggaccagctggtccctctggccccagaggcctggctggagaccctggtcccgttggtgtc
aagggagagagtggacccaagggtgagcctggttccatgggaccccagggtactgctgga
cccgcaggagaggagggcaagagaggctcaactggtgagcaaggagccactggacccgct
ggtatcgctggaccaagaggtacccctggaacccgtggtcttcctggtagtcccggccgt
gctggcccaatgggcatgactggtgctcgtggtgcatctggacccagtggtgcccgtgga
ccccctggagactctggccgtgctggtgagcccggtctgactggagccagaggtctgcct
ggaagccctggcagtgctggacccccaggaaaggagggccctgctggtcctgctggacaa
gatggccgctctggaccccctggcccaactggacccagaggacagcctggtactattgga
ttccccggccctaagggacctgctggtgataatggtaagcccggagagaagggacccact
ggaccaactggtctgagaggagcccctggccctgatggcaacaatggccctgctggaccc
gttggactttctggtggttctggtgagaaaggagagcagggaccttctggatctcctggt
ttccagggacttcctggacctgctggaccaggtggtgagcctggcaaagctggtgataga
ggtattcccggagaccagggtgcatctggacctgctggcgtgaagggagagcgtggtaac
ccaggacctgctggagcttctggccctcagggagccattggtgcccgtggacctgctggt
acacctggaactgatggtggcaagggagagcctggtgctgttggacctgccggtcaacct
ggacaccaaggcgctgctggcatgcccggagagcgtggcgctgccggaactcctggaccc
aagggtgagaagggtgagggtggattcagaggcgctgagggtaatgttggaagagatggt
gcccgtggtgcccctggaccttctggaccccccggaccagccggtgccaatggagagaag
ggagagaccggatcttacggacctgccggtcctgctggcccccgtggaccccctggagag
cgtggagagggaggccctgccggacctgctggattcgccggaccccctggtgctgatggc
caagctggagcaagaggagagaagggacctgccggtgtgaagggtgatgctggacctccc
ggccctgctggacctgctggcaactctggaccccttggaccttctggacctgctggcccc
cctggagctcgtggtgatggcggtccccctggtctgaccggtttccctggtgctgttggc
agagctggccctaccggtcctgctggtattgttggacctcctggacccactggagctgct
ggaaaggatggccctcgcggtgcccgtggtgatgctggacctgctgggccccctggagag
aatggcatgatcggacctgctggtcttgctggagacaagggatcccctggagagcctggt
cccgctggtgcccccggtacccctggacctcagggtcagcttggatctcagggattcagt
ggtcttcccggagcaagaggcgagcgtggtcttcctggtatggctggtggtcttggtgag
cctggaagacttggacctgctggtgctcctggacctcgtggtcctcctggtaacttgggc
atgcctggtatgaccggtccccaaggagaggctggacgtgagggtaaccctggtaacgat
ggacctcctggccgtcctggtgctgctggattcaagggtgaccgtggtgagcccggctct
aatggacctgctggccttcctggtaaccctggacctgctggacctgccggcgctgctggc
agacccggaaaccgtggtgagggtggacccgttggagctgctggagctgtcggacctgct
ggtgccagaggccaatctggccctgctggagctcgtggtgagaagggaggtgctggagac
aagggagacagaggcatgaagggactgcgtggacaccctggtctccagggaatgcctgga
cccaatggtcctcctggtgactctggtcccgctggtgccactggacattctggtcccaga
ggccccgctggtcctgctggaccttctggcaaggatggaagagctggagcccacggccct
gttggacccgtcggtcaccgtggtccccaaggacatcttggacctgctggtcctcccgga
tctcccggtctgcctggaccccctggtcccgctggtggctcttatgacgtctctggtggc
tttgacgagtacgctgctgaccaggccgccctcagggccaaggactacgaggtggatgcc
accctgaagtccctgaacacccagatcgatagcctgctctctcccgagggctccaagaag
aacccagcccgcacctgccgtgacatcaagctcagtcacccagactggagcagtggcttc
tactggatcgaccccaaccagggctgcaccatggatgccatcaaggccttctgtgacttc
tccactggacagacctgcatctacgctcaccccgagagcattgcccgcaagaactggtac
agaagctcccaggagaagaagcacacctggttcggagagaccatcaatggtggtactgag
ttcacatacaatgatgagaccatgagcacacagaccatggccactcagctggccttcatg
cgcctcctggccaaccaggctgttcagaacatcacctaccactgcaagaacagcgtcgcc
tacatggacgccgagaacggcaacctgaggaaggccgtcctgctgcagggctccaacgac
gtggagctgagggcagagggcaacagccgcttcactttcaacgtgttggaggatggatgc
accagacacactggccaatggagcaagacagtcattgaatacagaacgaataaaccatct
cgtcttcccatcctcgacattgcacctttggacattggtggcgctgaccaagaatttggt
ttggacattggcccagtctgtttcaaatga

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