Alosa sapidissima (American shad): 121695320
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Entry
121695320 CDS
T11137
Symbol
ddx39b
Name
(RefSeq) DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
asad Alosa sapidissima (American shad)
Pathway
asad03013
Nucleocytoplasmic transport
asad03015
mRNA surveillance pathway
asad03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
asad00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121695320 (ddx39b)
09122 Translation
03013 Nucleocytoplasmic transport
121695320 (ddx39b)
03015 mRNA surveillance pathway
121695320 (ddx39b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
asad03019
]
121695320 (ddx39b)
03041 Spliceosome [BR:
asad03041
]
121695320 (ddx39b)
Enzymes [BR:
asad01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
121695320 (ddx39b)
Messenger RNA biogenesis [BR:
asad03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
121695320 (ddx39b)
Spliceosome [BR:
asad03041
]
Complex C
Other components
EJC/TREX
121695320 (ddx39b)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
121695320 (ddx39b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
AAA_19
PRD1_P5_C
Motif
Other DBs
NCBI-GeneID:
121695320
NCBI-ProteinID:
XP_041931972
LinkDB
All DBs
Position
21:complement(11625839..11634645)
Genome browser
AA seq
437 aa
AA seq
DB search
MAENDVENELLDYEEDEVDTAGGVGDGGLAGGTGDAMSMQKAAVKGSYVSIHSSGFRDFL
LKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVT
GQVSVLVMCHTRELAFQISKEYERFSKYMPTVKVAVFFGGLSIKKDEEVLKRESPHVVVG
TPGRILALSRNKSLNLRHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATL
SKEIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVV
IFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQDERLSRYQQFKDFQRRILVATNLFGRGM
DIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDARILNDVQDRFEVNI
SELPEEIDISTYIEQSR
NT seq
1314 nt
NT seq
+upstream
nt +downstream
nt
atggctgagaacgatgtggagaatgagctcttggactatgaggaggatgaagtggatacc
gcagggggcgtcggagatggtgggttggcaggagggacgggagacgccatgtccatgcag
aaggcggcggtaaagggttcatatgtgtccatccactcctctggcttcagggactttctg
ctgaagccagagctgctgagggccatagtggactgcggctttgagcacccatccgaagtt
cagcatgagtgtattccccaggccattttgggaatggatgtgctgtgccaggccaagtcc
ggtatggggaagacagccgtatttgtactggccacactgcagcagctggagccggttact
ggtcaggtgtcagtgctggtgatgtgtcacacacgagagttggccttccagatcagcaaa
gagtatgagcgcttctccaagtacatgcccactgtcaaggtggctgtgttctttgggggt
ctgtccatcaagaaggacgaggaggttctgaagcgagagagtccccatgtagtggtgggg
acgccagggcgcatcctagccctctcccgcaacaagagcctcaacctgcgccacatcaag
cacttcatcttggatgagtgtgacaagatgctagaacagcttgacatgcgtcgtgatgtg
caggagatcttccgcatgactccccacgagaagcaagtcatgatgttcagcgccaccctc
agcaaagagatccgccctgtctgcaggaagttcatgcaagatcccatggaggtctttgtg
gatgacgagacaaagctgacactgcacggcctgcagcagtactacgtcaagctcaaggac
aacgagaagaacaggaagctctttgacctgcttgacgtgctcgagttcaaccaggtggtg
atctttgtgaagtcggtgcagcgttgcattgctctagctcagctgctggtggagcagaat
ttcccggctattgccatccaccggggaatgccacaggatgagaggctgtcccgctaccag
cagtttaaagacttccagcggcggatcctggtggccactaatctgtttggccgagggatg
gacatcgagagggtcaacattgccttcaactatgacatgccagaggactcggacacatac
ttgcatagggtggcacgcgcaggccgatttgggacgaagggtctggccatcacatttgtg
tctgacgagaatgacgcccgcatcctgaacgatgtgcaggaccgctttgaagtcaacatc
agtgaactgcccgaagagatcgacatctccacctacattgaacagagccggtga
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