Alosa sapidissima (American shad): 121695391
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Entry
121695391 CDS
T11137
Symbol
nfatc1
Name
(RefSeq) nuclear factor of activated T-cells, cytoplasmic 1 isoform X1
KO
K04446
nuclear factor of activated T-cells, cytoplasmic 1
Organism
asad Alosa sapidissima (American shad)
Pathway
asad04010
MAPK signaling pathway
asad04020
Calcium signaling pathway
asad04148
Efferocytosis
asad04218
Cellular senescence
asad04310
Wnt signaling pathway
asad04625
C-type lectin receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
asad00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
121695391 (nfatc1)
04310 Wnt signaling pathway
121695391 (nfatc1)
04020 Calcium signaling pathway
121695391 (nfatc1)
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
121695391 (nfatc1)
09143 Cell growth and death
04218 Cellular senescence
121695391 (nfatc1)
09150 Organismal Systems
09151 Immune system
04625 C-type lectin receptor signaling pathway
121695391 (nfatc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
asad03000
]
121695391 (nfatc1)
Transcription factors [BR:
asad03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
RHR (Rel homology region) NF-AT
121695391 (nfatc1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RHD_dimer
RHD_DNA_bind
Motif
Other DBs
NCBI-GeneID:
121695391
NCBI-ProteinID:
XP_041932111
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All DBs
Position
21:complement(18857889..18890152)
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AA seq
906 aa
AA seq
DB search
MKSAEEDAYGYPASGSLSLPVSNPYLSPQYHSPQGGPVLSVAITPPSSYGHQEDKVSLGF
YTSAGMRPNSTPALESPRIEITPYSQFSEEEEEGGSGGGTPAGNRIISVATLTLPNADGY
RDPSCLSPASSVSSRSCHSEASSYESGLSCTYDMSPQNSPWQSPCVSPKGGGSSSMHSCT
LAASPQPSPSGSPRTSSLGDDAWGTSRPASSPQPSSPCGSKRKYSFGGGGGGGGGGGGGV
VGGGGGGGGAYKYPYSPNQSPNPSPHTSPRLSVAEETWLSNTNQYTNSAIVAAINALSTD
GASDLGESLPLKTRRTGLDPCPSLSMKVEPRGDELVSGEYSTSDYGSPSHMPFKKEGYSG
GFLDVPQHTYSWSKPKTYISPSLPALDWQLPSSSGPYSLQIDVQPKSHHRAHYETEGSRG
AVKALAGGHPVVQLHGYMESEPLTLQLFIGTADDRMLRPHAFYQVHRITGKTVSTPSHEV
LQNSTKLLEIPLLPESNMKAIIDCAGILKLRNSDIELRKGETDIGRKNTRVRMVFRVHIS
QPNGRTISLQAASNPIECSQRSAQELPLVDKQSLDSCVVPGGEKMLLTGHNFQPDSKVVF
VENAQDGNHIWEMEAKVDKEASKSTSLLVEVPTYRNQNIASPVSVSFYVCNGKRRRSQCQ
RFTYLPPKVPTIKTEPHDDYELPQLCTQHAPGFPLHSKPYYSPQVLTAAMPVDPRPGTAG
PFGVAGPQRLGGKPSSLSSPVSSSSLSGSPKLHDLSPTHFPKGLLLGSPQPPAGPTPPPA
TASAAQVSAIQATAAACYQQSALFHPRVVSAPHLSPAVIASTPERPFSSLSPSHAPAHEV
PASVSPQPPKGSPRRSPSTFLPQQGSPSTLAVSIKQEPQELDQMYLDDVNEIIRNDLSSI
TVHSHA
NT seq
2721 nt
NT seq
+upstream
nt +downstream
nt
atgaaatctgccgaagaagacgcatacggctaccctgccagtggcagcctatcgctcccg
gtcagcaacccgtacctgtccccacagtaccacagtcctcaaggtggtccagttctgtct
gtggccatcacacctccgtccagctacgggcatcaggaggacaaagtgtccctggggttc
tacacatccgccggtatgcgtcccaatagcaccccggcactggagagcccgcggatcgag
ataacgccttatagccagttctctgaggaagaggaggaaggcggaagtggcggtggcacg
ccggcgggcaaccggatcatctccgtggcaacgctgacgctccccaacgccgacggctac
cgcgacccaagctgcctgagcccggcaagcagcgtgtcgtcgcggagctgccactcggag
gcgtcgtcatacgagtcgggcctgtcgtgcacctacgacatgtcgccgcagaactcgccc
tggcagtcgccctgcgtctccccgaaggggggcggctcgtcgtcgatgcactcctgtacg
ctggctgcgtcgccccagccctcgccctccggctcgccccgcacctccagcctcggcgac
gacgcctggggcacctcccgtccggcctcctccccacagcctagctccccctgtggcagc
aagcggaagtacagctttggcggcggtggtggtggtggtggaggaggaggaggtggggtt
gttggtggtgggggtggcggtgggggggcctacaagtacccatactcccccaaccagtcg
cccaacccttccccccacacctccccgcgcctcagcgtggccgaagagacgtggctgagc
aacaccaaccagtacaccaactcggccatcgtggcggccatcaacgccctctccacggac
ggggcaagcgacctcggggagagcctcccgctgaagacccgcaggactggcctggacccc
tgtccgtccctcagcatgaaggtggaaccgaggggagatgagctggtgtcaggagagtac
agcacgagcgactacggctccccctctcacatgcccttcaagaaggagggctacagcgga
ggcttcctggacgtaccccagcacacctactcatggtcaaagccaaagacatatattagc
ccgtctttgcccgctcttgactggcagctgccatccagctccggcccctacagccttcag
attgacgtgcagcccaagtctcaccaccgcgcccactacgagaccgagggcagcagaggg
gcagtgaaggcactcgcaggaggccatccagttgtgcagctgcatggctacatggaaagc
gagccgctgaccctccagctgttcattgggactgcggacgaccggatgctgcggccgcat
gctttctatcaggtccaccgcatcacgggcaagactgtgtcaacaccgagccatgaggtg
ctgcagaacagcaccaagctgctggagatacctctgcttccagagagcaacatgaaggct
ataatcgactgtgctggcattctcaagctgcgcaactcggacatcgagcttcggaagggc
gagacggacatcgggcgaaagaacacccgcgtgaggatggtgttccgagtgcacattagc
cagcctaatggaaggaccatctccctgcaggccgcctccaaccccatcgagtgctcccag
cggtcagcgcaggagcttcccttggtggacaagcagagcttggacagctgtgtggtccca
gggggggagaagatgctcctgaccggacacaacttccagcccgactccaaggttgtgttt
gtggagaacgcccaagatggcaatcatatatgggagatggaagccaaagttgacaaggaa
gcctccaaatcgacaagcttgttggtagaagtacctacttataggaaccagaatattgcc
agcccggtgtctgtgagcttctatgtgtgcaacggcaaacgcaggaggagtcagtgccag
cgcttcacctatctgccacccaaagttccaactataaaaacagagccgcatgatgactat
gagctccctcagctgtgtacccagcatgcacctggcttccctttgcattcgaagccttac
tactccccgcaggtgctgaccgccgcgatgcctgttgacccgaggcccggcacggcaggg
ccatttggcgttgccggcccccagcgtctcggaggaaagccgtcctcgttgtcctccccc
gtctccagctcgtccctcagtggcagccccaagctccacgacctgtcgcccacgcacttc
cccaaagggctgctgctcggctccccccagccgcccgcaggacccacacctccgccggcc
acggcctccgccgcacaagtgtcggccatccaggcgacggccgccgcctgctaccagcag
tccgctctcttccacccgcgggtggtctccgcgccacacctctcccccgctgtcattgcc
tcgacgccagagcgccccttcagcagcctgtccccgtcccacgcccccgcacacgaggtg
cctgcctctgtctccccacagccacccaaggggtcgcccaggagaagcccgtccaccttc
ctgccccaacaggggagcccctccacactggccgtcagcatcaagcaggagcctcaggag
ctcgaccagatgtacctggatgatgtcaatgaaatcattcggaatgatctatcgagtatc
actgtccacagccatgcatag
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