Alosa sapidissima (American shad): 121695500
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Entry
121695500 CDS
T11137
Name
(RefSeq) collagen alpha-1(XIV) chain-like isoform X1
KO
K08133
collagen type XIV alpha
Organism
asad Alosa sapidissima (American shad)
Brite
KEGG Orthology (KO) [BR:
asad00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
asad00535
]
121695500
Proteoglycans [BR:
asad00535
]
Extracellular matrix (ECM) proteoglycans
Others
121695500
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
fn3
Collagen
VWA_2
Pur_ac_phosph_N
NDNF
Fn3_Dep-1_2nd
FN3_Tor_3rd
VWA_3
DUF4959
Motif
Other DBs
NCBI-GeneID:
121695500
NCBI-ProteinID:
XP_041932326
LinkDB
All DBs
Position
21:20645276..20705156
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AA seq
1883 aa
AA seq
DB search
MQVAGFSSLLILTSVWLVPLPVQGQVPSPRRLRFKVLGTDKLSVSWKEPKGDFEGYKLFY
NTESGKEVKEIRTPKNEVKAVIENFDPDQEYNIKVVAVRGNQESKPLVGQYKTQGTGTDA
SNAIVQPQKKKDPAANEEDNEIREVDLFTCKIPATADIVILVDGSWSIGRINFRLVRAFL
ENLVSAFSVGSDKTRIGLAQYSGDPRIEWHLNAHTTKQSVIDAVKNLPYKGGNTLTGLAL
TYILENSFKPESGARTGIPKIGILLTDGKSQDDVQPPAQSLRNAGIELFAIGVKNADENE
LKAIASSPQETHVYNVADFSDMSSIVEGLTRTICDRVEQLNKDLKGESPQPESPAPPRDL
VTSEVTARSFRVTWTHAPGAVEKYRVVYYPAKGDKPEEVVVNGNENTVVLRYLNSLTEYQ
VAVFAVYSNTASEALRGTETTLALPMVDNLELFDVTHNSMQVRWKGAAGASGYMILYAPL
TEGDPADEKEVKVADTVTEVELEGLTPDTEYTVTVYAMYGDDASDPMTGQETTLPLSPAR
NLRITDVGHSSAQLGWNEASRKVRGYRIVYLKTRGAESKEFEVGPVTTQLLQNLTSLTEY
TVAVYARYAEGQSEALRGSFTTKTVPEPLNARTKEVGQTSFRVSWQHPATDVVLYKLLWG
ESDGETDVEEVMVNAQTNTYLVTGLKPFTEYEVSLSAIYKDESESESVILIETTAAGTTT
VRTTTTTTAVARQAVRNMQISDQTTFSFQVSWELQDPNVRQYRISYVTAQGDRAEEVKMI
SSQQKNILLQSLLSDTEYRVTVTPIYADGPGPVMTRAGRTLPLTAPRNLRVSEEWYNRFR
ITWDTPPSPTMGYRIVYQPISAPGRALETFVGEDVNTILILNLLTGTEYSVKVIASYTTG
SSEALVGKAKTLYLGVTNLKTYQVRTTSMCAQWQPHRHATLYRVIIESLLNGERQEASLG
GGATRHCFSNLTPNTDYKISIYAQLQETEGPAVTTIQKTFPLPTAAPTRPPTTPPPPTVP
LAKEVCKAAKADLVFLVDGSWSIGDDNFHKIIRFLHSTTGALDQIGPDGTQVAIAQFSDD
ARTEFKLNSYNNKERLLEAIQRIAYKGGNTKTGKAIKHVKDTIFTTEGGIRRAVPKVLVV
LTDGRSQDDVHKVSKEIQIEGYIVFAIGFADADYGELVSIASKPSERHVFFVDDLDAFRK
IEEKLVTFVCESASATCPSVPMRGSTMPGFRMMEVFGLTEQQYSNLDGVSMEAGTFNVFP
CYKLHKDAFIVQPTRYIHPEGLPSDYTITMLFRLLPETPEEPFALWEILNQNNEPLVGVI
LDHGGKTLTFFNNDYRGEFQTVTFEGPQIKKLFFGNFHKLHLVVSKTTVRAMIDCKLVGE
RPVNAAGNITTDGVEVLGRMVRSRGQKDNSAPFQLQSFEIVCSTSWASRDRCCDLPSLRK
EEDCPALPRACTCTQDSKGPPGPPGPPGGPGIRGARGDRGEPGPVGLSGPVGDAGIPGLQ
GPPGPQGPSGRTIMGPPGGPGERGQKGDAGPPGSQGNPGTTGPRGNAGPPGPRGQTGKDG
SQGRQGPPGNIGGPGAPGAPGQNGPPGAVGQQGPPGPSGGKGEKGERGDVQSTSNVQAIA
RQVCEQLIQSHMARFSSVLNHVPSAPVSVRTVPGPPGEPGRAGPRGPQGEQGPPGRPGFP
GSNGENGQPGARGLAGEKGEKGSQGVGVQGPRGPSGPPGPPGEGRTGSTGPSGRPGNPGT
PGRPGIPGPVGPAGPPGYCDQNSCMGYNIGEEESEGDPSPRGISVAQVPSAYQPYDPREH
DEPEGGYNYGVAYGSEYYQPNYPAPRPVSPDDPLLEADGATELRSPGVHRSSRSLAEMSE
SAAVAARDRPLGQKGDVRTADFH
NT seq
5652 nt
NT seq
+upstream
nt +downstream
nt
atgcaagtggcagggttcagctctctgctgattctgacttcagtatggcttgttcccctg
ccggtgcagggtcaagttccatctccacgaagattacgttttaaagttttgggcacagac
aaactcagcgtgtcttggaaagagcccaaaggagattttgagggctataagctgttctat
aacacagagtcaggtaaagaggtgaaggaaatacggacgcctaagaatgaggtgaaggct
gtgatagagaactttgaccctgaccaggagtacaacattaaagttgtagctgttcgtggg
aaccaggagagcaagccactggtgggacagtacaagacacaaggcacaggcacagatgca
agtaatgccattgtgcagccacagaagaagaaagatcccgctgctaatgaggaggacaat
gagatcagagaagtggacctgtttacatgtaaaatcccagccactgcggacattgtgatc
ctggtcgatggctcctggagtattggccgcatcaacttccgcctggtccgagcgtttctg
gagaacttggtcagtgctttctcagtgggctcagacaagaccagaattggtttggctcag
tacagtggtgacccacggattgagtggcatctgaatgcccacacgaccaaacagtctgtg
attgacgctgtgaagaacctgccatacaaaggaggcaacacactcactggccttgcactg
acgtacatcttggagaacagttttaagccagagtcaggggccaggacgggcattcccaaa
attggcatcctgctaacagatgggaaatcacaggatgatgtgcagcctcctgctcagagt
ctccggaatgcaggaattgagctatttgccattggtgtgaagaacgctgacgagaatgag
ctgaaggccatcgcctcttctcctcaggagacccatgtgtataatgtggcagacttcagc
gacatgagcagcatcgtggaaggcctcacccgcaccatctgtgatcgcgtcgagcagctc
aacaaggatctcaaaggtgaatctccgcagccagagagccctgctcccccgcgtgatctg
gtgacctctgaggtgacggcgcggagcttccgagtgacctggacacatgcgcccggtgcg
gttgagaagtatcgcgtggtgtactaccctgccaaaggagacaagccagaggaggtggtg
gtgaacggcaacgagaacacggtggtactgcgctacctgaactccctgaccgagtaccag
gtggccgtattcgccgtctacagcaacaccgccagcgaagctctccgcggcactgagacg
acgttggccttgcccatggtggacaacctggagctcttcgacgtcactcacaacagcatg
caggtccgctggaagggcgcggcgggcgcctcggggtacatgatcctctacgccccactc
acagagggggacccagccgacgagaaggaggtgaaagtggcggacactgtgacagaggtc
gagctggagggtctgaccccagacaccgaatacacagtgaccgtctacgccatgtatgga
gacgacgccagtgaccctatgactggtcaagaaaccacattgccgctctccccggcacgt
aaccttcgcatcacggacgtcggccacagctctgcccagctggggtggaacgaagcgtcc
aggaaggtcagaggttaccgcattgtgtatctgaagaccaggggcgcagagtccaaggag
tttgaggtgggccccgtcactactcagctgctgcagaatctgacctcactgacggagtac
actgtggccgtctatgccagatacgctgagggccaatcggaagctctcagggggagcttc
accaccaagacggttcctgagcctctgaatgcgcgaaccaaagaggtcggccagaccagc
ttccgggtcagctggcagcaccctgctacagacgtcgttctctacaaactcctgtgggga
gagagtgacggagagacagacgttgaagaggtcatggtgaatgcccaaaccaacacctac
cttgtgactggcctgaagcccttcaccgaatacgaagtgtccctctccgccatctacaag
gacgagtcggagagcgaatcagtcatcctgatagaaactactgcagcaggaaccacaacc
gtcaggacgaccaccaccacaaccgcagtggcgcgtcaggccgtaaggaacatgcagatc
agtgaccagaccaccttcagcttccaggtgtcttgggagctacaggaccccaatgtccgc
cagtatcgcatctcctacgtgacggcacaaggggaccgcgcagaggaggtgaaaatgatc
tcaagccaacagaagaatattctgctccagtctctgctctctgacacagagtacagagtg
accgtcacccctatctacgccgacggaccaggccctgtcatgacccgcgcgggccgcacc
ttgcctctgactgcacctaggaatctaagagtgtcagaggagtggtacaaccgtttccgg
atcacctgggatacacctccctcccccaccatgggctacagaattgtctaccagcccatc
tcagccccaggccgtgccctggagacgtttgtgggtgaagacgtgaacaccatcctgatc
ctcaacctgctcacgggtactgagtacagcgtcaaagtcatcgcctcgtacaccacaggc
tccagtgaggcgctcgttgggaaggccaagaccttgtacctgggcgtgaccaacctgaag
acctaccaggtgcgaaccaccagcatgtgtgcccagtggcagccacatcgccatgccacc
ctataccgcgtcatcattgagtctcttctcaatggagagagacaggaggcgtcactggga
gggggcgcaaccagacactgcttcagcaacctgacgcccaacacagactacaagatcagc
atctacgcccagctgcaggagaccgagggacccgctgtcaccaccatccagaaaacattc
cccctgcctaccgcagctccaacgagaccccccaccaccccacctcctcccactgtgccc
ctagccaaagaagtttgtaaagcagccaaggctgatctcgtcttcttggtggacggctcc
tggagtattggcgatgacaacttccacaagatcatccgcttcctgcacagcacgactggg
gcgctcgaccagatcggcccagatggcacacaggtggcaattgctcagttcagcgacgat
gccaggacggagtttaaactcaactcgtacaacaacaaggagcggctgctggaggcgatt
cagcgcatcgcttacaagggaggcaacaccaaaacagggaaagccataaagcacgtaaag
gacaccatcttcaccacagaagggggtatcaggagggccgtccccaaagtgcttgtggtc
ctcaccgacggacgctcccaggacgacgtccacaaggtctccaaggagattcaaattgaa
ggttacatcgtttttgccatcgggtttgcggatgccgactatggggagttggtgagcatc
gccagcaagcccagtgagaggcacgtcttcttcgtggatgacttggatgctttccggaag
attgaggaaaagctagtcacatttgtatgcgaatctgcatctgcaacttgcccatctgtg
ccaatgagaggcagcactatgccaggctttaggatgatggaagtgtttggactgacagag
caacaatacagcaaccttgacggggtgtccatggaggccggcacattcaacgtattcccc
tgctacaagcttcacaaggatgccttcattgtgcagcccaccaggtatatccacccagag
ggcttgccttccgactacaccatcaccatgctgttccgcctgctccccgaaacccctgag
gaaccgttcgctttatgggagatcctcaaccaaaacaatgagccccttgttggtgtcatt
ctagaccatggcgggaagactctcactttcttcaacaacgactacagaggagagttccag
accgtcacctttgaggggccccagatcaagaagctattcttcggcaatttccacaagctc
cacctagttgtcagcaagaccaccgtcagggccatgattgactgtaagctggtgggggag
aggccggtcaacgcggcggggaacatcaccaccgacggagtggaggtgctgggaaggatg
gtgcgctccaggggtcaaaaggacaattcagcaccattccagctccagtccttcgaaatc
gtctgcagtacatcctgggccagccgggacaggtgctgtgatctcccatccctgaggaag
gaggaagattgcccagctctcccacgtgcgtgcacctgcacacaggacagcaaaggccca
cctggaccccctggacctcctggtggccctggaattagaggagcaagaggagacagagga
gagccgggccctgtgggtctatctgggccagtgggagatgcaggaattccagggcttcag
ggaccccctggcccacagggaccaagtgggagaaccatcatgggacccccaggtggccct
ggtgaacgtggtcagaaaggggatgcaggcccacctggatctcagggcaacccaggtaca
actggcccacgtggaaatgcaggaccacctggaccaaggggccagactgggaaagatgga
tctcaaggacgacagggtcccccaggaaatattggtgggccaggagccccaggggcgcca
ggacagaatggaccacctggcgcggtcggacaacaaggcccgcctggtccctctggaggt
aaaggagagaagggtgaacgaggtgatgtccagtccacgtctaatgttcaggctattgca
cgacaagtttgtgaacagcttatacagagtcatatggcgcgcttcagctctgtcctaaac
catgtcccgagtgcacccgtgtctgtccgcacagtccctggacccccgggtgagccaggc
agggcaggaccgcgtggcccgcagggagagcagggacccccaggacggcctgggttcccg
ggcagcaacggagagaatggccaaccaggagccagaggtctagcgggtgagaagggggag
aagggaagccaaggcgttggtgtacaaggtcccagagggccttcaggtccaccaggaccg
cctggagaaggcaggactggtagcacaggcccatctggtcgtccgggcaaccctggcacc
cctggccgacctggcatcccgggccctgttggaccagctggtcccccaggctactgtgac
cagaactcttgtatgggctacaacataggagaggaagagtctgaaggtgacccatctccc
cggggtatttctgtagcccaagtgcccagtgcctaccagccgtacgaccccagagaacac
gatgaaccggagggtggctataactacggtgtggcctacggctcagagtactaccagccc
aactaccctgccccccggcccgtctcccccgacgacccgctgctggaggcggacggagcc
accgagctccggtcccctggcgtccaccgctcctcgcgcagcctggccgagatgtcggag
agcgccgccgtggcagctcgggaccgtccgctcggccagaagggagacgtgcgaactgct
gacttccactga
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