Alosa sapidissima (American shad): 121695837
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Entry
121695837 CDS
T11137
Symbol
si:ch211-269e2.1
Name
(RefSeq) LOW QUALITY PROTEIN: cohesin subunit SA-2
KO
K06671
cohesin complex subunit SA-1/2
Organism
asad Alosa sapidissima (American shad)
Pathway
asad04110
Cell cycle
Brite
KEGG Orthology (KO) [BR:
asad00001
]
09140 Cellular Processes
09143 Cell growth and death
04110 Cell cycle
121695837 (si:ch211-269e2.1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
asad03036
]
121695837 (si:ch211-269e2.1)
Chromosome and associated proteins [BR:
asad03036
]
Eukaryotic type
Sister chromatid cohesion proteins
Cohesin complex
121695837 (si:ch211-269e2.1)
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Motif
Pfam:
HEAT_SCC3-SA
STAG
SCD
Cnd1
PDS5
Motif
Other DBs
NCBI-GeneID:
121695837
NCBI-ProteinID:
XP_041932917
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Position
2:complement(30389080..30418063)
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AA seq
1192 aa
AA seq
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MIAEPTLINKPSVQNENEIVDLNSSGAVNRASGGRNENRQKSVRGKRKAREGVENAKRKH
PRTSNGGLGRAENGRPNKRDMESVTLFEVVTMGRGAIQAVVDDWIEAYVMDRDTALLDLI
SFFIQCSGCKGLVTAEMFQSRDIDVMSKMVEDLDEGSGLQYKRFMAFPWILTVTWPMDVD
SGEYPLVITTQYWKRFRSQFCEFVSVLVARCQNCIIFDGYLMSTLISLLTELSDSRLRAF
RHTCTLAAVKLLSALVSLSVNVDNSQKLLEVERSKTPGRNASPRLERIQRKVLELQERKL
ELENMMDAIFKGVFLKRYRDVVAEIRAVCMEELTVWMRLYGSLFLNDSYLKYVGWMLHDK
QPDVRLKCALGLQGLYLEENLSLKMDLFTIRFKERMLSMVLDKDHEVAMQAMKLLMSVSK
YCDDTFSQDDFKHMFQFVYSSNRPLAAAAGEILYCRLLVEPDVLTREGATGAERHRDLTL
ARVRALMHFSEESELHEHVVYLVDSLWECGGAVLRDWASLTSLLLQPSPPSSSSPAAQEQ
VVSPAELRFVLEVLLASVRQAAEGPPLAGRATGKKVIGAKDKKSQQDECVGLTAHLLRVL
PQLLCKYSEDVQMMTSLLKIPQYFQVITSGEEHSEAVQGLLARMEAAVSGHTDQALLEAA
ARSYLALSSEESPWHDHVIPVMDQLIQRWTAHLGTLLEDVLKEGHFTEDKEKAEEILSTL
RKLTAFHNGQHMSKWGLHDQVSKLLIAETKHGGLPAEVVVEALRCVGLSILWKLHSFGEV
AASREAVIRQRTQLRAFCEKCHRCLTHMEQQVREQAFVSLCDVLVAHNYQLQVWEPASGT
PLLLYAPDPKLQKALVTFILDHVFTGAETDGHSTRVSGLDTECGSTRLEDLHKRRNLLAA
YCKLIVTSVLEMSMAAEIFKQYMKYYSDFGDIIKETLNRTRQMDKIESARTLMLCLQQLY
LRLKQEQEGGSTGRRSDVQTYSSIKELARRFSLTFGWDQIKSRESLAMIHRDGVDFVFQG
FVQQAERHAPPNITYLTILSEFSSKLLKPDKKTVYSYLQKYAGEHTVNNREECWKPLIYY
RASLQATAEGDDTVSYISSDSNRPSLSSHSRCPSVRHTASDGEIKTSTPLPCIETKGTRP
TQRPLSSPIERKEVEQRPVVGEEPVDSISQASEEPLVSRYNNDEVDVDIVVG
NT seq
3579 nt
NT seq
+upstream
nt +downstream
nt
atgatagctgagccaacgttaatcaacaaaccatctgttcaaaacgagaacgaaattgtg
gatcttaattcttctggagctgtgaaccgtgccagtggagggagaaatgagaacagacaa
aagagcgtgaggggaaaaaggaaggcccgagaaggggtggagaatgccaaacgcaagcac
cccagaaccagcaatggaggcctgggcagagcagagaatgggcgccccaacaagagggac
atggaatcggtcaccctgtttgaagtggtcaccatggggcggggtgccatccaggccgtg
gtggatgactggatcgaggcctatgtgatggacagagacaccgctctcctggacctcatc
agcttcttcatccagtgctcagggtgcaaagggctggtcacagcagagatgtttcagagc
agagacattgatgtcatgagcaaaatggtggaagatcttgatgagggctcgggattgcag
tacaagaggttcatggccttcccctggatcctcactgtcacttggcccatggacgtggac
tctggcgagtatcctctcgtcatcaccactcagtactggaagcgcttccgctcgcagttc
tgtgaatttgtgtcggtgctggtggcacgctgtcagaactgcatcatcttcgacggctac
ctgatgagcactctgatctcgctgctgaccgagctctccgactcgcggctgcgtgccttc
aggcacacctgcacgctggcagcggtgaagctgctcagtgccctggtgagcctgagcgtg
aacgtggacaacagccagaagctgctggaggtggagaggtccaagacccccggccgaaat
gcctcgccccgcctggagcgcatccagaggaaggtgctggagctgcaggagaggaagctg
gagctggagaacatgatggacgccatctttaagggtgtcttcctcaagcgctacagggac
gtggtggcggagatcagggccgtctgtatggaggagctgacggtgtggatgcgcctgtac
ggcagcctgttcctgaatgacagctaccttaagtacgtcggctggatgctgcatgacaag
caaccagacgtgcggctgaagtgtgcgttgggactgcagggactgtacctggaagaaaac
ctcagcctcaaaatggacctcttcaccatccgcttcaaggagaggatgctctctatggtg
ctggataaagaccacgaggtggccatgcaggctatgaagctactgatgtccgtctctaag
tactgtgacgacacgttctctcaggatgacttcaagcacatgttccagtttgtctactct
tccaaccgccctctggcggccgccgcgggagaaatcctctactgcagactgcttgttgag
cctgacgtgctgaccagggagggggccacaggtgccgagcggcacagggacctaacgctg
gccagagtgcgggccctgatgcacttctcagaggagagcgagctgcacgagcatgtggtg
tacctggtggacagcctgtgggagtgtggcggggccgtgctcagggactgggcctcactc
acctcgctgctcctacagccctctccaccctcctcctcctcacctgcagcccaggagcaa
gttgtgagccctgctgagctgcgctttgtgctggaggtcctgttggcatcggtcagacag
gctgcagagggacctccactggccggcagagccacaggcaaaaaggttatcggtgctaaa
gacaagaagagccagcaggatgagtgtgtcggcctcacggctcacctgctgagggtgctg
cctcagctgctatgtaaatactcagaggatgtgcagatgatgacatcactactcaaaata
cctcagtacttccaggtgatcacgtcgggagaggagcacagcgaggctgtgcagggcctg
ctggctcggatggaggctgctgtgagcgggcacaccgaccaggctctgctggaggccgct
gcccgctcctacctggcgctcagctccgaagagtccccctggcacgaccacgtgatcccc
gtcatggaccagctcatccagcgctggaccgctcacctgggaacacttttagaagacgtg
ctaaaggagggacacttcactgaggataaagaaaaagctgaagaaattctgtccacactg
agaaaacttactgctttccataatggtcaacacatgtctaagtggggactgcatgaccag
gtgtctaaactgctcatagcagagaccaagcatggaggacttcctgcggaggtggtggtg
gaagctctgcgatgtgtgggtctgtctatcctctggaagctccacagctttggcgaggtg
gctgcctcaagggaggcagtcatccgccagaggacccagctccgagccttctgtgagaaa
tgtcatcgctgcctcacccacatggagcagcaggtccgggaacaggcatttgtgtccctg
tgtgacgtgctcgtggcccataactaccagctgcaggtgtgggagccggcgtcgggcacc
cctctgctcctctacgcccctgaccccaagctgcagaaggccctggtcaccttcatcctg
gaccatgtcttcactggcgccgagacggacggtcacagcacccgggtcagtggtttggac
actgagtgtggcagcactcggcttgaggacctgcacaagcgccggaacctgctggctgcc
tactgtaagctgatcgtgaccagcgtgctggagatgagcatggctgcagagatcttcaaa
cagtacatgaagtactactctgactttggggacatcatcaaagagacgctgaaccggaca
cggcagatggacaagattgagagtgcgcggacactgatgctgtgtctgcagcagctctac
ctgcgtctgaagcaggagcaggagggtgggagcactgggcggcgctcggacgtgcagacc
tacagcagcattaaggagctggcccgacgcttctccctcaccttcggctgggaccagatc
aagtcccgcgagtcactggccatgatccacagggatggcgtcgattttgtgttccagggc
tttgttcagcaggcagagaggcatgctcctcccaacatcacatacctcaccatcctcagc
gagttctccagcaagctcctcaagccagacaaaaagactgtgtacagctacctgcagaag
tacgcgggcgagcacacggtcaacaaccgggaggagtgctggaagccgctcatctactac
cgcgcatccctgcaggccacggccgagggagacgacaccgtctcctatatcagctccgac
agcaaccggccatcactgtccagccactctcgctgcccctccgtcaggcacacagcctca
gacggtgagataaagacctcaaccccactcccctgcatagagaccaaaggcaccaggccc
acccagaggcccctcagcagtccaatcgagagaaaggaagtggaacagcgccctgtggtc
ggcgaagagccagtggacagcatctcacaggcatctgaagagccgctagtgtccagatac
aacaacgatgaggtggatgtggacatagttgtaggatga
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