KEGG   Alosa sapidissima (American shad): 121696233
Entry
121696233         CDS       T11137                                 
Name
(RefSeq) cytoplasmic dynein 1 intermediate chain 1 isoform X1
  KO
K10415  dynein cytoplasmic 1 intermediate chain
Organism
asad  Alosa sapidissima (American shad)
Pathway
asad04145  Phagosome
asad04814  Motor proteins
asad05132  Salmonella infection
Brite
KEGG Orthology (KO) [BR:asad00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04145 Phagosome
    121696233
  09142 Cell motility
   04814 Motor proteins
    121696233
 09160 Human Diseases
  09171 Infectious disease: bacterial
   05132 Salmonella infection
    121696233
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:asad03036]
    121696233
  09183 Protein families: signaling and cellular processes
   04812 Cytoskeleton proteins [BR:asad04812]
    121696233
Chromosome and associated proteins [BR:asad03036]
 Eukaryotic type
  Centromeric chromatin formation proteins
   SAC (spindle assembly checkpoint) factors
    Motor proteins
     Dynein complex
      121696233
Cytoskeleton proteins [BR:asad04812]
 Eukaryotic cytoskeleton proteins
  Microtubules
   Tubulin-binding proteins
    Dyneins
     121696233
SSDB
Motif
Pfam: Beta-prop_THOC3 WD40_CDC20-Fz Beta-prop_WDR5 WD40_Prp19 WD40 Beta-prop_EML WDR55 Dynein_IC2 Beta-prop_WDR3_1st Beta-prop_WDR36-Utp21_1st Beta-prop_EML_2 Beta-prop_RIG_2nd WD40_WDHD1_1st Beta-prop_WDR19_1st Beta-prop_TEP1_C Beta-prop_TEP1_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_HPS5 EIF3I Beta-prop_CAF1B_HIR1 Beta-prop_WDR3_2nd Beta-prop_EIPR1 WD40_MABP1-WDR62_2nd Beta-prop_SPT8 Tricorn_2nd CAF1A_acidic
Other DBs
NCBI-GeneID: 121696233
NCBI-ProteinID: XP_041933528
LinkDB
Position
21:complement(23699171..23771810)
AA seq 648 aa
MADKSDLKAELERKKQRLAQIREEKKRKEEERKKKESETQQKAEVAPVDSDLDRKRRETE
ALLQSIGISPEPPLVPTPMSPSKVSTPSDTGSQDSVDGGTAGRCRAGSSGYSRYKTETKS
EKRTLQWDTDPSVLQLQADSELGRRLHRLGASKITQVDFLPREVVSYCKETQTPLAAHQS
EAEEEEEDEEITELKAGPESETQEEEDQKETKEGHPRELTEEEKQQVLHSEEFVMFFDRS
IRVMERALAEDSSIFFDYSGQDLEDKEGDLQGGSSLSFSRLFYDEHWSKHRVVTCLDWSP
QYQELLVASYNNNEDAPHEPDGVALVWNMKFKKTTPEYVFHCQSPVVSVGFARFHPNLVV
GGTYSGQIALWDNRSHRRTPVQRTPLCAAAHTHPVYCVNVVGTQNANNLITVSTDGKMCS
WSLDMLSQPQESMELVYNKSKPVAVTAMAFPTGDVNNYVVGSEEGTVYTASRHGSKAGIC
EMFEGHQGPVTGISCHGAVGTVDFSHLFVTSSFDWTVKLWSTKHNKPLYSFEDNADYVYD
VTWSPTHPAVFAAVDGMGRLDLWNLNNDTEVPTASVTVEGAPALNRVRWASGGKEVAVGD
SEGRVWIYDVGETAAPHSEDWARFARTLVEIRANRADGEEEDPAELAS
NT seq 1947 nt   +upstreamnt  +downstreamnt
atggctgacaaaagtgacctgaaagcggagctggagcgcaagaagcagcgcttggctcaa
atcagggaagagaaaaagagaaaggaggaagagaggaaaaagaaagagtcagagacacag
cagaaggccgaggtggcccctgtggactcggatctggaccggaagcgaagagagacggaa
gcgttgctgcagagcatcggcatctcccctgagccccccttagtcccgacgcccatgtcc
ccatccaaagtgagcacgcccagtgacaccggcagtcaggactctgtggatggtggaacg
gctggcagatgtagggcgggcagcagtggctatagtaggtacaaaactgagacaaagagt
gagaaaaggaccctgcagtgggacactgacccctctgtgctgcagctgcaggccgactct
gagctcgggcgtcggctgcaccgactcggcgcctccaagatcacccaggtagacttcctg
ccccgcgaggtggtgtcctactgcaaagagacccagactccactggcagcccatcagtct
gaagcagaggaagaagaggaggatgaagagatcacagagctcaaagctggcccagagtct
gagacacaggaagaggaggaccagaaggagaccaaagaaggccatcctcgcgagctgact
gaggaggagaagcagcaggtcctgcactctgaggagtttgtcatgttcttcgaccgcagc
atcagggtgatggagcgcgcacttgcagaggactccagcatcttcttcgactacagtggc
caggacctggaggataaggagggggacttacagggtggctccagtctgtccttcagccgt
ctgttctacgacgagcattggtccaagcaccgggtcgtcacctgtctggactggtcgccc
cagtaccaagagctcctggtggcctcgtacaacaacaatgaagacgcaccccacgagccg
gacggggtggccctggtgtggaacatgaagttcaagaagaccacgccagagtacgtcttc
cactgccagtctccagtggtgtcggtaggctttgcgcggttccatcccaacctggtggtg
gggggcacctactctggtcagatcgccctgtgggacaaccggagccaccggaggacgccg
gtccagaggacgcccctgtgtgctgccgcgcacacacaccccgtctactgtgtgaacgtg
gtgggcacccagaacgccaacaacctcatcaccgtctccaccgacggcaagatgtgctcc
tggagcctggacatgctgtcccagccgcaggagagcatggagctggtgtacaacaagtcc
aaaccggtggctgtgacagcgatggcgttccccaccggagacgtgaataattatgtggtt
ggaagcgaggagggaacggtctacacagcctctagacatggcagtaaggctggcatctgt
gagatgtttgagggccaccagggtccagtaacgggcatcagttgccatggcgctgtgggc
accgttgacttctcccacctctttgtcacctcctcctttgactggactgtcaagctgtgg
agcacgaagcacaacaagccactgtactcgtttgaggacaacgcagactatgtgtacgac
gtcacctggtccccgacacaccccgccgtctttgcagcagtagatggcatgggccgcctg
gacctgtggaacttgaacaatgacacagaggtacccactgcgagtgtgaccgtggaggga
gcgcccgccctcaaccgggtccgatgggcatcgggtggcaaggaggtggcagtgggtgac
tcagaaggccgagtgtggatctacgatgttggagagacggcggcgccacatagtgaggac
tgggcgcgctttgcccgcacgctggtggagatccgtgccaacagggcggacggagaggag
gaggacccagcggagttggcgtcgtaa

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