Alosa sapidissima (American shad): 121696865
Help
Entry
121696865 CDS
T11137
Name
(RefSeq) sodium- and chloride-dependent betaine transporter-like isoform X1
KO
K05046
solute carrier family 6 (neurotransmitter transporter, GABA) member 13
Organism
asad Alosa sapidissima (American shad)
Pathway
asad04082
Neuroactive ligand signaling
Brite
KEGG Orthology (KO) [BR:
asad00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04082 Neuroactive ligand signaling
121696865
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
asad02000
]
121696865
Transporters [BR:
asad02000
]
Solute carrier family (SLC)
SLC6: Sodium- and chloride-dependent neurotransmitter transporter
121696865
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF
Motif
Other DBs
NCBI-GeneID:
121696865
NCBI-ProteinID:
XP_041933877
LinkDB
All DBs
Position
22:complement(1960170..1986914)
Genome browser
AA seq
603 aa
AA seq
DB search
MINGEGIQQEEREEPMNTLHTGPSFGGMINSDISKSVRCSTQQPRGKWANKSEFLFAMAG
EIIGLGNVWRFPYLCYKNGGGVFFIPYFVFLLFCGIPIFFLETALGQYTSEGGITAWRKI
CPMFEGIGIASQVIVSYLNIYYIVVLAWAVIYLFNSFKSSLPWDNCDNLWNTENCTTLNV
SRTTLLHYDSNVTDFDGYSNDRMFGAVSPEEEFWRFRLLRQKDTDLGYINSDLALCLLLV
WIICYFCIWKGIKSTGKVVYFTATFPYLMLFILLIRGVTLPGAMNGIKYYLYPDLAKLRH
IQVWVDAGTQVFFSYAVCQGVLTALGSYNKYNNNCYRDCIGLCILNSCTSIFAGFAVFSV
LGFMAHQLGVDMAHVVMSGPGLAFIAYPKALALLPAAQFWSVLFFFMVLLLGLDSQFVCV
ESLATAISDLFPDELRKQGRREILVLIIAIVCFLFGLPFVTEGGINLFTLVDLYAVSGNS
LLFIACFETIVIAWIYGADRFYDNIKDMIGYPPFPLLKYCWLFITPLICGATLFYNMVST
SVTLPWGHSLAYILMLTPMLCIPAFIFVALLKTSGDPLTPSSDLRQMRPHKARLTLFGYV
IKP
NT seq
1812 nt
NT seq
+upstream
nt +downstream
nt
atgatcaatggagaagggattcaacaggaagagagggaggagcccatgaatacactgcac
acaggaccctcttttggggggatgataaactctgacatctcgaagagtgtccgttgcagc
acacagcagcccaggggcaaatgggctaacaagtctgagtttctgtttgccatggctggg
gagataattgggttgggcaatgtatggcgcttcccatacctctgttataaaaatggcgga
ggagttttctttatcccatactttgtattcctcttgttctgtggaattcccatattcttc
ctggagacagccttagggcagtataccagtgagggtggaatcactgcctggcgcaaaatt
tgccccatgtttgaagggataggaattgcatctcaggtgattgtatcatacctcaatatt
tattatattgtggtactagcttgggctgtcatctacctattcaactccttcaagagttct
ctaccctgggataactgtgacaacctctggaatacagaaaattgtaccactttgaatgtt
tccagaactactcttctgcattatgactcaaatgtcacagactttgatggctatagcaat
gaccgtatgtttggtgcagtcagtcccgaagaagaattctggcgatttcgattgttacgg
cagaaagacacagatctgggttatataaacagtgacctggctctttgtctcttgcttgtt
tggatcatctgctatttctgcatctggaaggggatcaaatccacgggcaaggttgtgtac
ttcacagctactttcccttatctgatgttgttcatcctcctaattcgtggcgtgactttg
ccaggtgctatgaatggaattaaatattacctctacccagacctggcaaaacttagacac
attcaggtatgggttgatgcggggacacaggtatttttctcttatgctgtttgccagggt
gtcctcactgctcttgggagctacaataaatacaacaacaactgctacagagactgcatt
ggcctttgcatactcaacagctgcacaagtattttcgctggatttgccgtcttctctgtg
ctgggtttcatggctcaccagctgggtgttgacatggcccatgttgttatgagtggtcct
ggacttgcctttattgcttatcccaaggcattagctcttctcccagctgctcagttctgg
tctgtgctcttcttcttcatggtccttcttcttggtctggacagccagtttgtgtgtgtt
gaaagcctggctacagccatatctgatctgtttcctgatgagctgaggaagcagggaaga
cgggagatcttggtgttgattattgccattgtgtgtttcctcttcggcctaccattcgtc
acagaggggggtatcaatctttttactttagttgacctttatgctgtcagtgggaacagc
cttctcttcattgcctgctttgaaaccattgtcatcgcatggatttatggtgcagatcgt
ttctatgacaatattaaagacatgattgggtatccaccatttcctttactgaagtactgt
tggctgtttatcacaccattgatatgtggggccacccttttctataatatggtatctacg
tcagtgactttgccatggggtcatagtttggcttacatcctcatgcttactcccatgctt
tgtattccagccttcatctttgtggctcttttaaagacttctggggacccactcacgcca
tccagtgacttgcggcagatgagaccacacaaagctcgacttacacttttcggttatgtc
atcaaaccttaa
DBGET
integrated database retrieval system
