Alosa sapidissima (American shad): 121696965
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Entry
121696965 CDS
T11137
Symbol
smfn
Name
(RefSeq) small fragment nuclease isoform X1
KO
K13288
oligoribonuclease [EC:3.1.-.-]
Organism
asad Alosa sapidissima (American shad)
Pathway
asad03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
asad00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
121696965 (smfn)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
asad03019
]
121696965 (smfn)
03009 Ribosome biogenesis [BR:
asad03009
]
121696965 (smfn)
Messenger RNA biogenesis [BR:
asad03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
121696965 (smfn)
Ribosome biogenesis [BR:
asad03009
]
Eukaryotic type
Pre-60S particles
RNases
121696965 (smfn)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
Rv2179c-like
DUF1091
Motif
Other DBs
NCBI-GeneID:
121696965
NCBI-ProteinID:
XP_041934107
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All DBs
Position
22:5788343..5792419
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AA seq
259 aa
AA seq
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MILRQMFRGISACSTGLAVFSRVAKPRSSICIASVNFHTDQYRLASSAFSRRLLSKHSLN
TTGNMDSCNFSNSASGDSTQRIVWVDLEMTGLDIDKDEIIEMACIITDSELNILAEGPNL
IINQPDELLDGMSEWCKTHHGNSGLTQAVRNSKISLQDAENEFLSFIKKYTPPRQCPLAG
NSVHADKRFLDKYMPQFMSQLHYRIIDVSTVKELCRRWYPEEYKKAPSKKGSHRALDDIR
ESIEELKFYRGAIFKTPQQ
NT seq
780 nt
NT seq
+upstream
nt +downstream
nt
atgattctgaggcagatgttccgtggaatatccgcatgttcgactggactagcagttttt
agccgggtggcaaaaccacggagtagtatatgcattgcttctgtaaactttcacacggac
caatatcgattagctagctctgcatttagccgcagacttttgtcaaaacattcgttgaac
actacaggaaacatggattcatgcaacttttccaactctgcctcgggagattcgacacag
aggatagtttgggtcgatttagagatgacaggactggacatagacaaagacgagattatt
gagatggcctgcatcatcacagactcagaactgaacatcctggctgagggaccaaatctg
atcataaaccagccagatgaactcttggatgggatgtcggaatggtgcaaaacacatcat
ggcaactcaggcctgacgcaagcagttcggaacagcaagatttctcttcaagatgcagag
aatgagttcctgtcctttatcaaaaagtacacccctcctcgtcagtgtccgctagcaggg
aattccgtccatgctgacaaaaggtttctggataaatacatgccccagtttatgagccag
ctccattaccgcatcatcgatgtcagcacagtcaaagagttgtgcagacggtggtaccca
gaggagtataagaaagcaccttcaaaaaagggatctcacagggcgcttgatgacatccgg
gagagcatagaggaactgaagttttacagaggcgccattttcaaaacaccacagcagtga
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