Alosa sapidissima (American shad): 121697014
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Entry
121697014 CDS
T11137
Name
(RefSeq) sodium- and chloride-dependent GABA transporter 2-like
KO
K05046
solute carrier family 6 (neurotransmitter transporter, GABA) member 13
Organism
asad Alosa sapidissima (American shad)
Pathway
asad04082
Neuroactive ligand signaling
Brite
KEGG Orthology (KO) [BR:
asad00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04082 Neuroactive ligand signaling
121697014
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
asad02000
]
121697014
Transporters [BR:
asad02000
]
Solute carrier family (SLC)
SLC6: Sodium- and chloride-dependent neurotransmitter transporter
121697014
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Gene cluster
GFIT
Motif
Pfam:
SNF
Motif
Other DBs
NCBI-GeneID:
121697014
NCBI-ProteinID:
XP_041934181
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Position
22:12624148..12660853
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AA seq
608 aa
AA seq
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MAVDQGVVLKKDGVPEKPLDERKSLDKTSLLERGQWASKAEFLLAVAGQIIGLGNVWRFP
YLCYKNGGGVFFVPYLLFLVLCGVPLFLLETSLGQFTCLGGVSAWRSICPLFGGLGYASQ
IMILHGCVYYIVILAWAFFYLCSSFQSVLPWSHCNNTWNTAACVEFDRQNITGNGSLVEN
ATSPVMEFWEEEVLKLSPGPDQLGSVNWRLALCLLIVWVVCYFCVWKGVKSTGKVVYLTA
TFPYVMLFILLARGVTLPGASTGIIYYLKPNHTRLADPQVWMDAGTQIFFSYGICLGSLT
ALGSYNRYNNDCYKDCFLLCLLNSATSFLAGFAIFSVLGFMAEEQGVRMDQVAQSGPGLA
FIAFPRAVAMMPVPQLWAVCFFLMIIMLGLDTQFVSLEALMTSVSDLYPTVVRRGHRREL
LLLVICVICFLVGLMMVTPGGLYVFQIYDHFSCSGASLLLLSIFQSVAVGWVYGPDRFSE
NIKSMIGYSPSPAFRLCWKYLTPTVCIGTFMFSLVRWAPLDLGKGVVAPTWASGLGWLLT
LSSVSMLPLWALYALINTPGSLKQRLCLLCQPAADSPLAHKQLGNGCDLTLDPSTYPTSE
KLLMGGVI
NT seq
1827 nt
NT seq
+upstream
nt +downstream
nt
atggcagtggatcaaggtgttgtactcaagaaagacggcgtgccggaaaagcctttggat
gagcgaaagagcttggacaagacatccctgctggagcgcgggcagtgggccagtaaggcc
gagttcctgttggccgtagcagggcagatcattggcctgggcaacgtctggcgcttccct
tatctctgctacaagaatggagggggagtgtttttcgtgccgtacctgctgttcctggta
ctgtgtggggttccattgttcctactggagacatcactgggtcagttcacctgtctgggc
ggagtcagtgcatggaggagtatatgccctctctttggaggtctcggttatgccagccag
atcatgattctgcacggttgcgtatactacatcgtcatcttggcctgggctttcttctac
ctgtgctccagctttcagagcgtgctgccttggtcccactgcaacaacacctggaacaca
gcggcatgtgtggaatttgatagacagaacatcacaggcaatgggagtttggtggaaaac
gccacatctccagtcatggagttttgggaggaagaggtgctgaagctctcccccggccct
gatcagctgggttcagttaactggcgtctggctctctgtctgctgatagtctgggttgtc
tgctacttctgtgtgtggaaaggtgtcaaatccacaggcaaggtggtgtatctgactgct
acgttcccgtatgtgatgctgtttatcctgctggcccgtggggtcactctccctggggcc
tcgaccggaatcatctactacctcaaacccaatcacacgcggcttgctgacccccaggtc
tggatggatgctggaactcagatattcttttcctatggcatctgcctgggcagcctcact
gcgctgggtagttacaacagatacaacaatgactgctacaaagattgcttcctgttgtgt
ctgctgaacagtgccaccagcttcctggctggcttcgccatcttctccgtgctggggttc
atggcagaggagcagggcgtccgcatggatcaggtggcccagtcaggaccgggactggca
tttatagcatttccgcgggccgttgctatgatgccagtacctcagctgtgggctgtctgc
ttcttcctgatgatcatcatgctgggactagacacacagtttgtgagtctggaggcgctg
atgacgtcggtgtcagacctgtaccccacggtggtgcgtcggggccaccgccgtgagctg
ttgctgctcgtcatctgcgtgatctgcttcctggtcggcctgatgatggtcacgccggga
gggctgtatgttttccagatctacgatcacttctcctgcagtggagccagcctgctgtta
ctgtccatcttccagtctgtggccgtgggatgggtctacggcccagatcgcttctctgag
aacatcaagagcatgatcggttactcgccctcccccgccttccggctgtgctggaagtac
ctcacccccaccgtctgcattggaacatttatgttctctctggtgcgctgggccccgctg
gatctgggcaaaggcgtggtggcccctacgtgggcctcgggactgggctggctcctaacg
ctgtcctcagtgtccatgctgccactctgggcactctatgctcttatcaacacaccaggc
agcttaaaacagcgcctgtgccttctgtgtcagccggctgccgactcccccctggcccac
aagcagctcggcaacggctgcgacctgactctggaccccagtacatacccgacgtccgag
aagcttctcatgggcggcgtcatctag
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