Alosa sapidissima (American shad): 121697147
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Entry
121697147 CDS
T11137
Symbol
msh2
Name
(RefSeq) LOW QUALITY PROTEIN: DNA mismatch repair protein Msh2
KO
K08735
DNA mismatch repair protein MSH2
Organism
asad Alosa sapidissima (American shad)
Pathway
asad03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
asad00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
121697147 (msh2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
asad03400
]
121697147 (msh2)
DNA repair and recombination proteins [BR:
asad03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
121697147 (msh2)
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NCBI-GeneID:
121697147
NCBI-ProteinID:
XP_041934415
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Position
22:27081228..27089979
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AA seq
942 aa
AA seq
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MAVQPKQNLSMDSASESGFLNFFFSMPEKPDTTFRVFDRNDYYTVHGKDAIYAAKEVFKT
NQVVKNLGSGSKKLESVVLSKMNFESFVRDLLLVRQYRVEVYKNKAGGKSTKEHDWQVEY
KASPGNLSQFEEILFGGGGAPGEGVAGVVGVRVGSGPDGHRVVGVGYVDSTLRKVGVCEF
PDNDQFSNLEALLVQMGPKECVLPIGDAGGDTGKLRQVVQRGGILLSDRKKSEFTTKDIV
QDLDRLLRARKGETVSSAALPEMEKQIAMSSLAAVIKFLELLSDEANFNSFQITTFDLNQ
YMRLDNAAVNALNLFPGSDTTVGSHSLSGLLNRCRTPQGQRLVNQWIKQPLIDKNKIEER
LNLVESFVEDSELRQSCQEDLLRRFPDLNRLAKKFQRHSATLQDCYRAYQAVGQLPALVL
ALQRYSGKHEVLLNAVFITPLNDLISDFSKFQEMIETTLDMNQIEHHEFLVKPSFDPTLS
ELRENMDRLEKGMQSALTSAARELGLDGGKTMKLESNAQIGYFFRVTCKEEKSLRNNKKF
TTLDVQKNGVRFTNSKLSSLNEEYTKSREEYEEAQNAIVKEILSIASGYMDPLHTLNEVT
AQLDAVVSFALVSNAAPVPYVRPRILDKGSGRLFLKGSRHPCVEAQDDVAFIPNDVSFTR
AQETFHIITGPNMGGKSTYIRQVGVIVLMAQIGCFVPCEEAEVSVVDSVLARVGAGDSQI
KGVSTFMAEMLETAAILRSATEDSLIIIDELGRGTSTYDGFGLAWAISEFIATELRSFCL
FATHFHELTALAQQLPTVHNLHVTALTSHDTLTMLYRVKKGVCDQSFGIHVAELANFPPH
VIASAREKALELEEFQDLAPRETEGEGDTEGPEAKRRCLQKQEGERLIEGFLAQVKALPL
KGLTEEAVKQRLSELKAELTAHNNSFVNEIVNRASGSKLVTT
NT seq
2829 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgcaaccaaagcagaacctgtctatggacagtgcgtccgaatcgggtttctta
aacttttttttctctatgccggaaaaaccagacactacatttagggtttttgatcgcaac
gattactacactgtgcatggaaaagatgccatctatgcagcaaaagaggttttcaagact
aatcaagtcgtcaaaaatctcggatcagggagcaagaaacttgagagcgtggtcctcagt
aaaatgaacttcgagtcttttgtgagagatctgctcctcgttcgccagtaccgcgtcgaa
gtgtacaagaacaaggctggcggcaagagtaccaaagagcatgattggcaagtggaatac
aaggcatcacctggaaatctgtcccagtttgaagagatcctgtttggtggtggtggggct
ccaggggaaggtgtggcaggagtggtcggggtgcgtgtgggctctgggcctgatgggcat
cgtgtggtcggcgtgggttatgtcgactccaccctcaggaaagttggtgtttgtgagttc
cccgacaacgaccagttctccaacttggaggccttgctggtgcagatgggaccaaaggag
tgtgtgttgccaatcggggacgcagggggagacacaggcaagctccgacaggttgtccag
cgaggaggaatcctattgtcggatagaaagaagtccgagtttaccacaaaggacattgtc
caggatttggacagactgttgagagctcgcaagggtgagactgtctccagtgctgccctg
cctgagatggagaaacagattgccatgtcctccctggcagcagtcatcaagttcctagag
cttctgtctgacgaagcaaacttcaactccttccagatcacgacttttgacctaaaccag
tacatgcgtctggacaacgctgctgtgaacgcgctcaaccttttccctgggtcggacacg
actgtgggctcccactccctgtcaggccttctgaacaggtgcaggaccccacagggccaa
cgccttgttaaccaatggatcaagcagcctctgattgacaagaataagatcgaggagagg
ctgaatcttgtggaaagctttgtggaggactctgaactgaggcagagctgtcaggaggac
ttgctccggcgcttccctgacctcaaccgcctggccaagaagttccagaggcacagtgcc
accctgcaggactgctaccgcgcctaccaggccgtgggtcagctccctgcgctggtcctg
gccctgcaacgctacagtgggaaacacgaggtgctgttgaatgctgtttttatcactcca
ctcaatgacctcatctccgatttctccaagttccaggagatgattgaaaccacgctggac
atgaatcagattgagcaccatgagttcctggtgaagccctcatttgacccgacactgagc
gagctcagggagaacatggacaggctggagaagggtatgcagtcagcgctgaccagtgct
gccagggaactgggcctggatggaggaaagactatgaagttggagtccaatgcccagatt
ggctactttttcagagtgacctgtaaggaagaaaagagtctgaggaacaacaagaagttc
accacactggatgtacagaagaatggcgtgcgcttcactaacagcaaactgagctcacta
aatgaagagtacacgaagagcagagaggagtatgaagaggcccagaatgccatcgtgaag
gagatcctcagcattgcctcaggctacatggacccgctgcacacactgaacgaggtgact
gcccagctggacgcagtggtgagttttgcgctggtgtccaacgctgccccggtgccatac
gtgcggccacgcatactggacaagggctcaggccgcctgttcctcaagggctcccgccat
ccctgtgtggaggcacaggatgatgtggctttcatccccaatgatgtgtcctttactcgc
gcccaggagaccttccacatcatcacaggtcctaacatggggggcaagtctacctacatc
cgccaggtgggagtgattgtgctgatggcgcagatcggctgctttgtgccgtgcgaggag
gcggaggtgagcgtagtggacagcgtgttggcacgtgtgggtgctggagacagtcagatc
aagggtgtgtccaccttcatggctgaaatgctggaaacggcagccatactccgctcagcc
acagaagactccctcatcatcattgatgagctgggccggggcacttccacctatgatggc
tttggcctggcctgggccatctctgagttcatcgccaccgagctgcgctccttctgcctg
tttgctacgcacttccacgagctgaccgcactggcccaacagctgcctaccgtccacaac
ctgcatgtcactgccctgacctcccacgacacactcaccatgctctacagggtcaagaag
ggcgtgtgcgatcagagctttgggatccatgtggcggaactggccaacttccctccacat
gtgatcgccagcgcgcgggagaaagccctggagctggaggagttccaggacctcgcccct
cgggagactgaaggggaaggcgacactgagggacctgaggccaagagacgctgccttcag
aagcaggagggggagcgtctgatcgagggtttcctggcgcaggtaaaggccttgcccctg
aagggcttgactgaggaggctgtcaagcaacgactctctgaactcaaggctgagctcaca
gctcacaataacagctttgtcaacgagatcgtgaatcgggcttctggcagcaagctggtc
accacctaa
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