Alosa sapidissima (American shad): 121697186
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Entry
121697186 CDS
T11137
Symbol
utp20
Name
(RefSeq) small subunit processome component 20 homolog isoform X1
KO
K14772
U3 small nucleolar RNA-associated protein 20
Organism
asad Alosa sapidissima (American shad)
Brite
KEGG Orthology (KO) [BR:
asad00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
asad03009
]
121697186 (utp20)
Ribosome biogenesis [BR:
asad03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
121697186 (utp20)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UTP20_N
UTP20
UTP20_C
Nop14
CEP104-like_TOG
Motif
Other DBs
NCBI-GeneID:
121697186
NCBI-ProteinID:
XP_041934503
LinkDB
All DBs
Position
22:2387544..2446841
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AA seq
2862 aa
AA seq
DB search
MKLKIKPTSHKSDNTYRFLTFSERLANVNIDVIHRIDRTRSYDEEVETYFYEALNKWRDL
NLTEHFTVFLKEVSNKSQSFNLLVFHQKAIVDSLKTHLSVKGSMAFQPLLDLVVQLARDL
QTDFYPHFPEFFVIITAILETQDTEVLEWVFTCLSYLYKYLWRLMVKDMNKIYSMYSKLL
AHKKEHIRNFAAESFSFLMRKVPDFDALFALMFADLGEQSHKAAGVGQLIFEMCKGVRSM
FHSCATVALPAALRKLGPSAEEGCVTLPWDAVKEALDHMAEAAANHVEKEHFLVLWDALE
GCVKEVVPRLQGSGSDEASQHLDRLLFLYHTLVQHRKGAKVTKPAAVFETLLLLVQISGQ
SYACSQRTLQVLACLLLGECVPALTPQLTQDAVRKVFLSGMDRDLILTFSKELFKMKQFE
QLVLPGLLQYLEVLFGSGDPVGRLQAQELLVRLILEKAPPPSDGSMAFEKYPLVFTGQTQ
GSGPAGAEGADGKVNVPQYILSLVDLPPDLPLTDLSLPWAALVLLHHIRPVEPESVVPIL
TTLLNRLLTDVKNGALGRAGLFVARQALSTLLSFRDSAEVLSLLPVELVRSIIQKYPADL
SALLLGDLYYTRLSLSGCSAHLSHDALLELYQILKSNFSSNVSKIRLLSLRILSHFEAEL
AKPAEAEEPRDRQTVFAICLQAEQVPATVQDYREKLLHLRKLRHDLVQPCLPTGPFQEVP
LRYLIAMLFVNFTPLWDAVIELLVSHAQGMDSKAFWRVFHEQLDMVAQLAEDELNEEDED
AEGAADGDEDDVADGEEEEEVADEGMEAEEEEEEEEKEGEESDAGRDVSASGDVGVLFLE
QLDEGEEGIDERTDFTNFRNLLWRAMSLFPERVEPRSRELSPLLLRFIREEFFPSDLMVA
PTQNLLKAAGGATKDAEGKDEEEEEEGPRSRRKGPRRAAAKQLIAHLKVFSKFTNPRALY
LEPKLKELYTKLLCHKDQNIQKMALECVLTYKDPAILPYKENLERLLDDKHFKDEIVHFN
ISEEGTVVQEDHRPQLIPLLMRILYGRMSTKGGSKFQGKAVTASRSSIVLRFLAGCQPHE
LGVFIDMLLDPVAHYSQGGCAEAVDRVVQESNPAAVLPVGRQHSLLNVVAVLLDKLGHLL
DTHLPKLFQILLCLTASVSRVLEHREQLKPGCIAPLKNLRRLGLLRVQDFFSSFESYNFT
ADQIDAIFNAVVWPQICRLPSESPYAPTPLLKLIHIWSKNARFFPLLAKQRPGHPECGVL
LNVFALLSVKNVSPATTAMVMDIAESLLTTEDFVAMETENEAEKEEELCVNDCVVPELGG
ASDVSEDSVSLGSKLLYPHVPAVLQYLSKMVRNSDRLRKKKFRAQVGKELNILSKISRFV
RDKQQSATLITLLLPYLTKPKTAQETELDILETTQNLLKQCSNPAEFLKPMSRLLSTLQS
KLSRQALCAVFQTLAELDGELKYITDMAVQLNAFDSRHLDEIYFDVRLTAFQEATRRVQD
MRVLDMRYLHTLMHNCFHSFEIGDMSLADTAILCLSTVIEQLAALGTPEKEFREIVQHNI
MDAIRRGLRSKMESVRNDYTTVLACLVKTFPERPEFRDLVQLTNYNDPESDFFEHMKHIQ
VHRRGRALRRIAKQLMDGTVVMSSRSMQNYIMPYAMTALFDEKMKRNDNMSSAGVEVVGA
VCKRLTWSKYLYYLKHFVHILQMGLAEQKLAVNLLLTVLEAFHFDRETLSKEIEAAKLRK
EAAATEIEDDEEEADEEDSEDSDGEDAMEPVSTEGDAVAMETEDSATKPDVQQKEAESKK
KSMPTVCTGLPQSVQDLEALIGTVHHSVTQSILPRLHKCLTAKVQRDDEHKTMQSKEVKE
EEVARVPIAFAMVRLMLSLPQDVMEANLPGVLLKVCVHLRSRFQEIRDVARSTLIKIIQT
LGSRYLLYLLKEMQGVLMKGYQVHVLTFTVYHLLCVLKPTLKGGDLDPCLDLLVQMFNNE
LFGPVAEEKEVKGIGSKLMEARHSKSADSYELLGQFCSQEKVTQIMLPLKEILESTMSLR
VSRRVHMVLRRVVTGLLQNDVMTPQAVLMLSHGLVNESLPLITQKNRQKPLPPPDPRLAP
PSCLLLPPTPKRGFQKAAVSSKTNTHILVETGLSLLHLSMKTSKVNSSVSDVREMLDPFV
ELLLDCLGSKHVKVITEALQAFIWVLKFPLPAVEEGVEPLTRQLFLLLKDYASAGAARGE
NFTLVQNCFKAITILVKSVTKHEITDTQLQVLLGYAEEDIYDHTRQATAFGLLKAILSRK
LVVPEMEEVMKKVAKLAITGASDQVRVPCRQIYLKYLMDYPLGKKLRKHLDFVVAQLSYE
YDTGRQSALEMMAYIFQSFPQNLLLEHCGLFFVPLSLAVVNDDSARCKKMTALAIKSLLS
QLDPEHQNNMFTLVNTWMTGDKMSLRRLGVQVCGLFVEVEGERFTKRMEVLLPLIEKDIH
TDNYEDIEEEQDEKAADRLLFCHLTLITKLIKDCGFLQLTKPRDTLTSIWAHVDAHLRHP
HSWVWLTAAQLFGQLFAAHRPEQLLELWGESSTSSTSSSPATPVATAHLYNNLDKKMREL
VLSFCHQLQSKFLDPTAGDQVVKNLLFVAKVIYLISPESDVTETNKAGENGVTQMEEGKR
EEEEEMKGEEEEEEGEKAEEEEKGEEEKAEEEEEGEQEEEEEEEEDVDDDRPPSLLWVMK
KLCVLAKREAAYTPKVPLKRTCVFKFLGAVAVDLGKDRLDPYLTTIIRPLHRELDSTYAD
QDPTLKNLAQELIELLKKLVGLQRFSLAFATVQKEASKRRASRKRHRAMQAVANPDIAAR
RKIKKHTKMEAKKRKMDFSRKPSKAKKLKLRGKSARDLAILQ
NT seq
8589 nt
NT seq
+upstream
nt +downstream
nt
atgaagctgaaaattaaaccgacgtcccacaaatcagacaatacgtacaggtttctcact
ttctccgagagacttgccaacgtgaatattgatgtcatccatcgcattgaccgaacacgg
agctatgacgaggaagtagagacgtacttttacgaagcattgaacaaatggagggatcta
aacttaaccgagcacttcaccgtcttcctgaaggaggtgtcgaacaagagccagtccttc
aacctgctggtgttccatcagaaggccatcgtggacagtctgaagacccacctcagtgtg
aagggcagcatggcatttcaacctctgctggacctggtagtccagctcgctcgggatctg
cagacggacttctatcctcacttcccagaattctttgtcatcatcacggccatcttggaa
acgcaggacacagaggtgctggagtgggtcttcacttgtctgtcctatctctacaagtac
ctgtggaggctcatggttaaagacatgaacaagatctacagcatgtacagcaagttgctg
gctcacaagaaagagcacatccgcaactttgcagccgagagcttctctttcctcatgagg
aaggtccctgattttgatgcgttgttcgcgctcatgtttgcggaccttggcgagcaatcc
cataaggccgctggggtgggccagctcatctttgagatgtgcaagggggtccgcagcatg
ttccactcctgtgccactgtggctctccctgcagctctgcggaagctcggcccctcagcg
gaggaagggtgcgtgacactgccctgggacgctgtgaaggaggccctggatcacatggct
gaggcggcagccaatcacgtggagaaagagcacttcctggttctctgggacgctctggag
ggctgtgtgaaggaggtggttccgcgtctacaaggttctggttctgacgaggccagtcag
cacctagaccgtctgctcttcctctaccacaccctcgtgcaacaccgtaagggggcaaag
gtcaccaagccagccgctgtgtttgagactcttctcctgctggtccagatcagcggtcag
tcgtacgcgtgcagccagaggactctgcaggtgttggcatgcctgctgctgggggagtgt
gtgccggccctcacaccacagctcacacaggacgccgtcaggaaggtgttcctcagtggc
atggaccgcgacctgatattgaccttctccaaagagctcttcaagatgaagcagtttgag
cagctggtgctgccggggctgctgcagtacctggaggtcctgtttgggtccggtgacccg
gtgggtcggctgcaggcccaggagctgctggtccggctcatcctggagaaggccccgccc
ccctccgacgggtccatggccttcgagaagtacccgctggtcttcactggacagacgcag
ggtagtggccctgcgggggcagaaggggctgatgggaaggtgaacgtgccccagtacatc
ctctccctcgtggatctacccccagacctgcccctcactgacctctctctgccctgggct
gccctggtgctcctgcaccacatacggccggtggagccggagtctgtagtcccgatcctg
accacacttctgaaccgcctcctgactgacgtgaagaacggggcactggggagagcgggt
ctgtttgtggcgcgccaggctctgagcactctgctcagtttcagggactctgctgaggtc
ctctctctcctccctgtggagttagtcaggagtatcatacaaaaataccccgccgatctc
tctgccttgttgcttggcgacctctactacaccagactgtcactcagcggctgctccgcc
catctctcccatgatgcattgctggagttgtaccagatcctgaagtccaatttctcctcc
aacgtctccaagatccgtctcctgtcactgaggatcctgagccactttgaggccgagttg
gcgaagcctgctgaggctgaagagcccagagacaggcagacagtgtttgccatatgcctt
caggcagagcaggtccctgcgactgtccaggactacagagagaagctgcttcacctcagg
aagctacgccatgacttggtgcagccctgcctacccaccggaccatttcaggaggtgcct
ctgcgctacctgatcgccatgctctttgtgaacttcacacctctgtgggacgccgtcatt
gagctgcttgtgtcgcatgcccaggggatggacagtaaggcgttctggagggtgttccat
gagcagctggacatggtggcccagctggcagaggacgaactcaatgaggaggatgaggat
gctgagggtgctgcagatggggatgaagatgacgttgctgatggagaggaggaggaggag
gtggctgatgaaggtatggaggcagaggaagaagaggaggaggaggaaaaggaaggggag
gagtcagacgctggacgagacgtgtcggccagcggcgatgtgggcgttctcttcctggag
cagctggatgagggggaggaggggatcgatgaacgcactgacttcaccaacttccggaac
cttctgtggcgcgccatgagtcttttccccgagcgcgtggaacccaggagcagagaactc
agtcccttactgctgcgcttcatcagggaggagttcttcccgtctgacctgatggtggct
ccgacgcagaacctcctgaaggcagcagggggcgccactaaggacgcagaggggaaggat
gaagaggaggaggaggagggccccaggagcaggaggaagggaccacgacgtgccgccgct
aagcagctgatagcccatctgaaggtgttctccaagttcaccaacccacgggccctttac
ttggagcccaagctcaaagaactatacacaaagctcctgtgccataaggaccagaacatc
cagaagatggccttggagtgtgtgctcacctataaagatcctgccatcctgccatacaaa
gagaacctggagaggttgctggatgataaacactttaaggatgagattgtccacttcaac
atctctgaggagggaacagtggtccaagaggaccacaggccacagctcataccactgctt
atgaggatcctgtatggtcgtatgtccactaaggggggcagtaagttccaggggaaagcg
gtcactgcctcacgctcctccatcgtgctaaggttcctcgccgggtgccaaccccacgag
ctgggagtctttatagacatgctactggatccagtggctcactacagtcaaggagggtgt
gcagaggcggtggaccgcgtggtccaggagtccaacccggcggcggttctgccggtgggt
cggcagcacagcctgctgaacgtggtggcggttctgctggacaagctgggtcacctgctg
gacactcacctgcccaagctgttccagatcctcctgtgtctgaccgcctccgtctcacgc
gtactggagcacagagaacagttgaagccaggctgcattgcccctctgaagaacctgagg
cgcttggggctgctgcgggtgcaagacttcttcagcagcttcgagtcctacaacttcact
gcagaccagatcgatgccatcttcaacgcagtcgtctggcctcagatttgtcgtctgcct
tcagagagcccctatgcccccacgcctctgctcaaactcatccacatctggagcaagaat
gccaggttcttccccctgttggccaagcagagacctggacacccggagtgtggcgtcctc
cttaacgtcttcgctctgctctctgtcaaaaacgtttccccggcaaccaccgccatggta
atggacatcgcagagagcctgctcaccaccgaggactttgtcgctatggagacggagaat
gaggctgagaaggaggaggagctgtgtgtgaatgactgcgtggttccggagctgggagga
gcttctgatgtctcagaagactctgtgagtttgggttctaagctcctctaccctcatgtt
ccggcggttcttcagtacctgagtaagatggtacgaaactctgaccgcctccgcaagaag
aagttccgtgctcaagttggcaaggaactcaacatcctctccaagatcagccgatttgtg
agggataaacagcagagtgccacactcatcaccttgttgctgccttacctgaccaaacca
aagactgcccaggagactgaattggacatcctggagacgacacagaaccttctgaagcag
tgttctaaccccgcagagttcctcaagcccatgagtcgcctactgtccacactccaaagc
aaactctcacgccaggcactgtgtgctgtgtttcagacactggcagagctggatggggag
ctcaaatacatcacagacatggctgtgcagttgaatgcgtttgacagtcgtcacctggat
gaaatctactttgatgtgcgtctgacagcgttccaggaggccaccaggcgtgtgcaggac
atgcgtgtgctggacatgagatacctgcacacactcatgcacaactgcttccactcgttt
gagataggggacatgtctctggcggacaccgccatcttgtgtctgtcgacggtcattgag
cagctggctgcgttgggcactccagagaaggagttccgggagatcgtccaacacaacatc
atggacgctatacgcagagggcttaggagtaagatggagagcgtgaggaacgactacacc
acggttctggcatgtctggtaaagacattccctgagcggccagagtttcgggacttggtc
cagctcacaaactacaatgacccggagtcagacttctttgagcacatgaagcatattcag
gttcacaggagagggcgtgccctcaggaggatcgccaaacaactgatggacggcaccgtg
gtgatgtcatcacgctccatgcagaactacatcatgccctacgccatgaccgcactgttt
gatgagaagatgaaaaggaatgacaacatgagctccgcaggtgtggaggtggtgggggcg
gtgtgtaagcgtctcacctggtctaagtacctgtactacctcaaacacttcgtccacata
ctgcagatgggtttggccgaacagaagctggcagtcaatctgctgttgactgttctagag
gcattccactttgaccgtgagacccttagcaaagagatcgaagccgccaagctcaggaag
gaggcagctgccacggagatagaggatgacgaagaggaggctgatgaagaagactcggag
gacagtgatggtgaggacgccatggaacccgtctccacagagggggatgctgtagccatg
gagacagaagactcggccaccaagcctgacgtccagcagaaggaggcggagtcaaagaag
aagtccatgcccactgtgtgcacaggcctaccgcagagcgtccaggacctggaggctctg
attggcactgtccatcactccgtcacccagagcatcttgccccgcctacacaagtgcctc
actgccaaggtccagagagatgacgagcacaagacgatgcagtctaaagaggtgaaggag
gaggaggtggctcgtgtgcccatagccttcgccatggtccgcctcatgctgtcccttcca
caggacgtcatggaggccaacctgcccggggtgctgctgaaggtgtgtgtccacctgagg
agtcgtttccaggagatccgagacgtggcgaggagcacgctcattaagatcatccagaca
ctcggctcacgctacctcctctacctgctcaaggagatgcagggcgtcctcatgaagggc
taccaggtgcatgtgttgaccttcacggtgtaccacctgctgtgtgtgctgaaacccaca
ctgaagggcggagacctggacccctgtttggacctgctggtgcagatgttcaataacgag
ctgtttgggccagtggccgaggagaaggaggtgaagggcatcggctccaagctcatggag
gcgcgccacagcaagagtgccgactcctatgagctcctcgggcagttctgcagccaggag
aaggtcacgcagatcatgctaccactcaaagagatcttagagagcacgatgagtctgagg
gtgtcccggagggtccacatggtgctgaggagagtggttactgggttactgcagaatgat
gtcatgacccctcaggctgtcctcatgctgagtcacggactggtcaacgagagtctcccc
ctcataacgcagaagaacagacagaagcccctcccacccccagacccccgtctggctccg
cccagctgcctgctgttgcccccgacgcccaagagaggtttccagaaggccgcggtcagc
agcaagaccaacacacacatcctggtggagacagggctcagtctgctgcacctgagcatg
aaaacctcaaaggtgaactcgtctgtgtcggacgtcagggagatgctggacccctttgtg
gaactgctgctggactgcctcggctccaaacacgtcaaggtgatcacggaggcgctgcag
gcgtttatctgggtgctgaagttcccgctgccggcagtggaggagggggtggagcctctg
acccgtcagctcttcctgctgctcaaggactacgccagcgctggggccgcccggggagag
aacttcaccctggtgcagaactgcttcaaggccatcaccatcctggtgaaaagtgtcact
aagcatgagataaccgacacgcagctgcaagtgctgctgggatacgcagaggaggacatc
tacgaccacacacgccaggccacggcgttcggcctgctgaaggccatcttgtccaggaag
ttggtggtgccagagatggaggaagtgatgaagaaggtggccaagctggccatcacagga
gccagcgaccaggtccgagtcccctgcagacagatttacctgaagtacctcatggactat
cctttggggaagaaactcaggaagcacctagactttgtcgtcgctcagctcagctatgag
tacgacacgggcaggcagtctgcactggagatgatggcttacatattccagagcttccca
cagaacctgctgctggagcactgtggtctgttcttcgtcccgttgtccctggcggtggtg
aacgatgactctgcgcgctgcaagaagatgactgctctggccatcaagtccctcctcagc
cagctggaccctgagcaccagaacaacatgttcaccctggtcaacacctggatgaccgga
gacaagatgtcactgaggcgtttgggcgtgcaggtgtgcggtctgtttgttgaggttgag
ggagagcgtttcaccaaaaggatggaagtcctactgccccttattgagaaagacatccac
acagacaactatgaagacattgaagaggagcaggatgaaaaggctgctgacaggctgctg
ttctgccacctcaccctaatcaccaaactcatcaaagactgcggattcctacagctcacc
aagcccagggatacactaaccagcatctgggctcacgtggacgcccacctgcggcatccg
cactcgtgggtgtggctgacggcggcgcagctgtttggtcagctgtttgcagcccacagg
cccgagcagctgctggagctctggggggagagtagcaccagcagcaccagcagcagcccg
gctacacctgtggccactgcacatctctacaacaacctggacaagaagatgagagagctg
gtcctgtccttctgccatcagctgcagtcgaagttcctggacccaaccgcaggcgaccag
gtggtgaagaacctgctctttgttgccaaggtgatttacctgatctcacccgagtctgat
gtcacggaaaccaacaaggctggcgagaatggagtgacacagatggaagaaggaaaaaga
gaggaggaagaggagatgaaaggagaggaggaagaggaggaaggggagaaggcagaggag
gaagagaaaggagaggaggagaaggcagaggaggaagaggagggagaacaagaggaggag
gaggaggaggaggaggatgttgatgatgatcgccctccttccttactgtgggtgatgaag
aagctgtgtgtgttggccaagagagaggcagcatacacacccaaggttcctctcaagagg
acgtgtgtgtttaagtttctgggcgccgtggcagtggacctggggaaagatcgccttgac
ccgtacctgaccaccatcatcagaccactgcacagagaactggacagcacctatgcagac
caggacccgacgctgaagaacctggcccaggagctgatcgagctgctgaagaagctggtg
ggcctgcagcgcttctctctggccttcgccaccgtccagaaagaggccagcaagaggaga
gcgtcacgcaagaggcacagggccatgcaggccgtggcgaacccagacatcgctgcccgg
aggaagatcaagaaacacaccaagatggaggctaagaagaggaagatggacttctccaga
aagccctccaaggccaagaagctcaagctgagggggaagtctgcgagggacctggccatt
ttacagtga
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integrated database retrieval system
