Alosa sapidissima (American shad): 121697534
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Entry
121697534 CDS
T11137
Symbol
nup50
Name
(RefSeq) nuclear pore complex protein Nup50 isoform X1
KO
K14295
nuclear pore complex protein Nup50
Organism
asad Alosa sapidissima (American shad)
Pathway
asad03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
asad00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
121697534 (nup50)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
asad03019
]
121697534 (nup50)
Messenger RNA biogenesis [BR:
asad03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
121697534 (nup50)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NUP50
Ran_BP1
Motif
Other DBs
NCBI-GeneID:
121697534
NCBI-ProteinID:
XP_041935014
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Position
22:complement(21461108..21481159)
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AA seq
542 aa
AA seq
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MAKRIADKELTDRNWDQEDESEEAGTFSVASMDVMKNRPIKKAKRRNLGGESEGGTSFKG
FKGFALSASGPAATAAAAPTFSGFGNGASFKPLAGLTNGNGSSTSGGSALAAPAFGSFSS
PGATKPSTTLGSLTFNGPSSAAPPLAVGGERQWNGSASGPTGAAVSVGSSSSSSINSSSS
AEYRRQLTALNCSVRDWITKHVNDNPLCDLNPIFRDYERHLASIEKKYGGAGGGGGGGGV
GGAGATATGPPASDAKSEAAPAEGVKTGGLQLTSSGGSSTAASTSSSSGTAAPSLFSFSK
DASSSTTTTSSSSSSSPASLPSGVTFNFGQKVDSSVLSSFPPGGGAPSFSFSTSSSALSS
SSSSTPSLFGGLSSSGGSGGAAAPSAPFSFSLAKTEAPSAAAAPSTADVNGADEDSEEPP
VPVVKEIKEKDAFYSKKCKLFYKKESEFKEKGVGTLHLKTVAEGKLQLLVRADTNLGNIL
LNIMVSSNMPCSRTGKNNVMVVCVPNPAVDDKNPSTPVPMLIRVKTAEDADELHKLMLEK
RA
NT seq
1629 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagaggattgcagacaaggagctgacagaccgaaactgggatcaggaggatgaa
tctgaggaggcagggacattttccgtggccagtatggatgtgatgaaaaacagacccatc
aagaaggccaaacgtcgcaatttgggtggagagagtgagggaggcacttcgtttaaggga
ttcaagggctttgccctctccgcgtctggaccggcggcgacagcagcagcagcccccacc
ttctccggctttggtaatggtgccagcttcaagcccctggctggcctgaccaatggcaac
ggcagcagcaccagtggaggctctgccctggccgccccagccttcggcagcttctcctcc
cctggtgccaccaagccctctaccacccttggctcattgacattcaacggcccctcctcc
gcggcccccccattggctgtgggcggtgagcgacagtggaacggctccgcctccgggccg
acaggagcagcagtgagcgtgggcagcagcagcagcagcagcattaacagcagcagcagc
gcagagtacaggcggcagctcaccgcgctcaactgctccgtgcgcgactggatcaccaag
cacgtcaacgacaacccgctgtgcgacctcaaccccatcttccgcgactatgagcggcac
ctggccagcatcgagaagaagtacggcggcgcaggaggaggaggcggcggcggcggcgtg
gggggggctggcgccacggcaaccgggcccccggcatccgatgccaagagtgaggctgca
ccggcggagggggtgaagactgggggactgcagctgaccagcagcggcggtagctccaca
gctgcctccacctccagcagcagtggcaccgcagccccgtctctcttcagcttcagcaag
gacgcctccagctccaccaccaccacctcctcctcctcctcctcctcccctgcctccttg
ccctctggggtcacctttaacttcggccagaaggtggactcctccgtcctgtcctcattc
ccccccggcggaggagcgcccagcttctccttctccacctcttcatctgcattgtcctcc
tcctcctcctccaccccctccctcttcggtggtctgagctcgagcggcggcagcggagga
gcggctgccccctcggcgcccttctccttcagcctggccaagactgaggcgcccagtgcc
gctgcggcccccagcacagcagatgttaacggggcagatgaggactccgaggagccgcct
gttcccgtggtcaaagagatcaaggagaaagatgccttctactctaaaaagtgtaagctg
ttctataagaaggagagtgagtttaaggagaagggggtgggcacgctgcatctcaagacg
gtggccgagggcaaactgcagctgctggtccgtgctgacaccaacttgggaaacattcta
ctgaacatcatggtgtcatccaacatgccctgctcgcgcacaggcaagaacaatgtgatg
gtggtgtgcgtgccgaacccggcggtggacgacaagaaccccagcacgcccgtgcccatg
ctgatccgtgtcaagactgcggaggacgccgacgagctgcacaagctcatgctggagaag
cgggcctga
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